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Eeckhoudt J, Alonso M, Geerlings P, De Proft F. Bond Lengths and Dipole Moments of Diatomic Molecules under Isotropic Pressure with the XP-PCM and GOSTSHYP Models. J Chem Theory Comput 2024; 20:7430-7442. [PMID: 39189061 DOI: 10.1021/acs.jctc.4c00665] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/28/2024]
Abstract
While high-pressure chemistry has a well-established history, methods to simulate pressure at the single-molecule level have been somewhat lacking. The current work aims at comparing two static models (XP-PCM and GOSTSHYP) to apply isotropic pressure to single molecules, focusing on the equilibrium bond length and electric dipole moment of diatomic molecules. Numerical challenges arising in the potential energy surface using the XP-PCM method were examined, and a pragmatic approach was followed to mitigate these. The definition of the cavity was scrutinized, and two approaches to retrieve the isotropic character that could potentially be lost when using the standard methodology were suggested. Subsequently, equilibrium bond lengths under pressure were evaluated, showing reasonable agreement between GOSTSHYP and XP-PCM, but some discrepancies persist. A Taylor series analysis introduced elsewhere was then applied to rationalize the observed trends in terms of the bond surface. Finally, the dipole moment was shown to be highly sensitive to the cavity definition, and qualitative agreement necessitates the use of our adapted procedure.
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Affiliation(s)
- Jochen Eeckhoudt
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, B-1050 Brussels, Belgium
| | - Mercedes Alonso
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, B-1050 Brussels, Belgium
| | - Paul Geerlings
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, B-1050 Brussels, Belgium
| | - Frank De Proft
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, B-1050 Brussels, Belgium
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Muriel WA, Novoa T, Cárdenas C, Contreras-García J. Introducing electron correlation in solid-state calculations for superconducting states. Faraday Discuss 2024. [PMID: 39212071 DOI: 10.1039/d4fd00073k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/04/2024]
Abstract
Analyzing the electronic localization of superconductors has been recently shown to be relevant for understanding their critical temperature [Nature Communications, 12, 5381, (2021)]. However, these relationships have only been shown at the Kohn-Sham density functional theory (DFT) level, where the onset of strong correlation linked to the superconducting state is missing. In this contribution, we approximate the superconducting gap in order to reconstruct the superconducting the one-reduced density matrix (1RDM) from a DFT calculation. This allows us to analyse the electron density and localization in the strong correlation regime. The method is applied to two well-known superconductors. Electron localization features along the electron-phonon coupling directions and hydrogen cluster formations are observed for different solids. However, in both cases we see that the overall localization channels are not affected by the onset of superconductivity, explaining the ability of DFT localization channels to characterize the superconducting ones.
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Affiliation(s)
- Wilver A Muriel
- Departamento de Física, Facultad de Ciencias, Universidad de Chile, Chile
- Centro para el Desarrollo de la Nanociencia y la Nanotecnología (CEDENNA), RM 9170124, Santiago, Chile
| | - Trinidad Novoa
- Laboratoire de Chimie Théorique, Sorbonne Université, CNRS, 4 Pl. Jussieu, 75005, Paris, France.
| | - Carlos Cárdenas
- Departamento de Física, Facultad de Ciencias, Universidad de Chile, Chile
| | - Julia Contreras-García
- Laboratoire de Chimie Théorique, Sorbonne Université, CNRS, 4 Pl. Jussieu, 75005, Paris, France.
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Echeverri A, Gallegos M, Gómez T, Pendás ÁM, Cárdenas C. Calculation of the ELF in the excited state with single-determinant methods. J Chem Phys 2023; 158:2887544. [PMID: 37125705 DOI: 10.1063/5.0142918] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2023] [Accepted: 04/17/2023] [Indexed: 05/02/2023] Open
Abstract
Since its first definition, back in 1990, the electron localization function (ELF) has settled as one of the most commonly employed techniques to characterize the nature of the chemical bond in real space. Although most of the work using the ELF has focused on the study of ground-state chemical reactivity, a growing interest has blossomed to apply these techniques to the nearly unexplored realm of excited states and photochemistry. Since accurate excited electronic states usually require to account appropriately for electron correlation, the standard single-determinant ELF formulation cannot be blindly applied to them, and it is necessary to turn to correlated ELF descriptions based on the two-particle density matrix (2-PDM). The latter requires costly wavefunction approaches, unaffordable for most of the systems of current photochemical interest. Here, we compare the exact, 2-PDM-based ELF results with those of approximate 2-PDM reconstructions taken from reduced density matrix functional theory. Our approach is put to the test in a wide variety of representative scenarios, such as those provided by the lowest-lying excited electronic states of simple diatomic and polyatomic molecules. Altogether, our results suggest that even approximate 2-PDMs are able to accurately reproduce, on a general basis, the topological and statistical features of the ELF scalar field, paving the way toward the application of cost-effective methodologies, such as time-dependent-Hartree-Fock or time-dependent density functional theory, in the accurate description of the chemical bonding in excited states of photochemical relevance.
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Affiliation(s)
- Andrea Echeverri
- Departamento de Física, Facultad de Ciencias, Universidad de Chile, Casilla 653, Santiago, Chile
| | - Miguel Gallegos
- Depto. Química Física y Analítica, Universidad de Oviedo, 33006 Oviedo, Spain
| | - Tatiana Gómez
- Theoretical and Computational Chemistry Center, Institute of Applied Chemical Sciences, Faculty of Engineering, Universidad Autonoma de Chile, El Llano Subercaceaux, 2801 Santiago, Chile
| | - Ángel Martín Pendás
- Depto. Química Física y Analítica, Universidad de Oviedo, 33006 Oviedo, Spain
| | - Carlos Cárdenas
- Departamento de Física, Facultad de Ciencias, Universidad de Chile, Casilla 653, Santiago, Chile
- Centro para el Desarrollo de la Nanociencia y la Nanotecnología (CEDENNA), Avda. Ecuador 3493, Santiago 9170124, Chile
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Quantum states of a confined hydrogen atom calculated in a basis of explicitly correlated Gaussians. Chem Phys Lett 2022. [DOI: 10.1016/j.cplett.2022.139358] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Robles-Navarro A, Cárdenas C, Fuentealba P. Electronegativity under Confinement. Molecules 2021; 26:molecules26226924. [PMID: 34834015 PMCID: PMC8620044 DOI: 10.3390/molecules26226924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Revised: 09/29/2021] [Accepted: 11/10/2021] [Indexed: 11/16/2022] Open
Abstract
The electronegativity concept was first formulated by Pauling in the first half of the 20th century to explain quantitatively the properties of chemical bonds between different types of atoms. Today, it is widely known that, in high-pressure regimes, the reactivity properties of atoms can change, and, thus, the bond patterns in molecules and solids are affected. In this work, we studied the effects of high pressure modeled by a confining potential on different definitions of electronegativity and, additionally, tested the accuracy of first-order perturbation theory in the context of density functional theory for confined atoms of the second row at the Hartree–Fock level. As expected, the electronegativity of atoms at high confinement is very different than that of their free counterparts since it depends on the electronic configuration of the atom, and, thus, its periodicity is modified at higher pressures.
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Affiliation(s)
- Andrés Robles-Navarro
- Departamento de Física, Facultad de Ciencias, Universidad de Chile, Las Palmeras 3425, Ñuñoa, Santiago 7800003, Chile;
| | - Carlos Cárdenas
- Departamento de Física, Facultad de Ciencias, Universidad de Chile, Las Palmeras 3425, Ñuñoa, Santiago 7800003, Chile;
- Centro para el Desarrollo de la Nanociencia y la Nanotecnología (CEDENNA), Avda. Ecuador 3493, Estación Central, Santiago 9170124, Chile
- Correspondence: (C.C.); (P.F.)
| | - Patricio Fuentealba
- Departamento de Física, Facultad de Ciencias, Universidad de Chile, Las Palmeras 3425, Ñuñoa, Santiago 7800003, Chile;
- Centro para el Desarrollo de la Nanociencia y la Nanotecnología (CEDENNA), Avda. Ecuador 3493, Estación Central, Santiago 9170124, Chile
- Correspondence: (C.C.); (P.F.)
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Scheurer M, Dreuw A, Epifanovsky E, Head-Gordon M, Stauch T. Modeling Molecules under Pressure with Gaussian Potentials. J Chem Theory Comput 2021; 17:583-597. [PMID: 33350311 DOI: 10.1021/acs.jctc.0c01212] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
The computational modeling of molecules under high pressure is a growing research area that augments experimental high-pressure chemistry. Here, a new electronic structure method for modeling atoms and molecules under pressure, Gaussians On Surface Tesserae Simulate HYdrostatic Pressure (GOSTSHYP) approach, is introduced. In this method, a set of Gaussian potentials is distributed evenly on the van der Waals surface of the investigated chemical system, leading to a compression of the electron density and the atomic scaffold. Since no parameters other than pressure need to be specified, GOSTSHYP allows straightforward geometry optimizations and ab initio molecular dynamics simulations of chemical systems under pressure for nonexpert users. Calculated energies, bond lengths, and dipole moments under pressure fall within the range of established computational methods for high-pressure chemistry. A Diels-Alder reaction and the cyclotrimerization of acetylene showcase the ability of GOSTSHYP to model pressure-induced chemical reactions. The connection to mechanochemistry is pointed out.
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Affiliation(s)
- Maximilian Scheurer
- Interdisciplinary Center for Scientific Computing, Heidelberg University, D-69120 Heidelberg, Germany
| | - Andreas Dreuw
- Interdisciplinary Center for Scientific Computing, Heidelberg University, D-69120 Heidelberg, Germany
| | - Evgeny Epifanovsky
- Q-Chem Inc., 6601 Owens Dr, Suite 105, Pleasanton, California 94588, United States
| | - Martin Head-Gordon
- Pitzer Center for Theoretical Chemistry, University of California, Berkeley, South Dr, Berkeley, California 94720, United States.,Chemical Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd, Berkeley, California 94720, United States
| | - Tim Stauch
- Institute for Physical and Theoretical Chemistry, University of Bremen, Leobener Str. NW2, D-28359 Bremen, Germany.,Bremen Center for Computational Materials Science, University of Bremen, Am Fallturm 1, D-28359 Bremen, Germany.,MAPEX Center for Materials and Processes, University of Bremen, Bibliothekstr. 1, D-28359 Bremen, Germany
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Pašteka LF, Helgaker T, Saue T, Sundholm D, Werner HJ, Hasanbulli M, Major J, Schwerdtfeger P. Atoms and molecules in soft confinement potentials. Mol Phys 2020. [DOI: 10.1080/00268976.2020.1730989] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
- L. F. Pašteka
- Centre for Advanced Study (CAS) at the Norwegian Academy of Science and Letters, Oslo, Norway
- Department of Physical and Theoretical Chemistry & Laboratory for Advanced Materials, Faculty of Natural Sciences, Comenius University, Bratislava, Slovakia
| | - T. Helgaker
- Centre for Advanced Study (CAS) at the Norwegian Academy of Science and Letters, Oslo, Norway
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, Oslo, Norway
| | - T. Saue
- Centre for Advanced Study (CAS) at the Norwegian Academy of Science and Letters, Oslo, Norway
- Laboratoire de Chimie et Physique Quantiques, UMR 5626 CNRS – Universitè Toulouse III (Paul Sabatier), Toulouse Cedex 09, France
| | - D. Sundholm
- Centre for Advanced Study (CAS) at the Norwegian Academy of Science and Letters, Oslo, Norway
- Department of Chemistry, University of Helsinki, Helsinki, Finland
| | - H.-J. Werner
- Centre for Advanced Study (CAS) at the Norwegian Academy of Science and Letters, Oslo, Norway
- Institute for Theoretical Chemistry, University of Stuttgart, Stuttgart, Germany
| | - M. Hasanbulli
- Centre for Theoretical Chemistry and Physics, The New Zealand Institute for Advanced Study, Massey University Auckland, Auckland, New Zealand
| | - J. Major
- Centre for Theoretical Chemistry and Physics, The New Zealand Institute for Advanced Study, Massey University Auckland, Auckland, New Zealand
| | - P. Schwerdtfeger
- Centre for Advanced Study (CAS) at the Norwegian Academy of Science and Letters, Oslo, Norway
- Centre for Theoretical Chemistry and Physics, The New Zealand Institute for Advanced Study, Massey University Auckland, Auckland, New Zealand
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