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For: He X, Liu J. A new perspective for nonadiabatic dynamics with phase space mapping models. J Chem Phys 2019;151:024105. [DOI: 10.1063/1.5108736] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
Number Cited by Other Article(s)
1
Huang H, Peng J, Zhang Y, Gu FL, Lan Z, Xu C. The development of the QM/MM interface and its application for the on-the-fly QM/MM nonadiabatic dynamics in JADE package: Theory, implementation, and applications. J Chem Phys 2024;160:234101. [PMID: 38884395 DOI: 10.1063/5.0215036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Accepted: 05/15/2024] [Indexed: 06/18/2024]  Open
2
He X, Cheng X, Wu B, Liu J. Nonadiabatic Field with Triangle Window Functions on Quantum Phase Space. J Phys Chem Lett 2024;15:5452-5466. [PMID: 38747729 PMCID: PMC11129318 DOI: 10.1021/acs.jpclett.4c00793] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2024] [Revised: 04/29/2024] [Accepted: 05/01/2024] [Indexed: 05/24/2024]
3
Xu J, Shi Z, Wang L. Consistent Construction of the Density Matrix from Surface Hopping Trajectories. J Chem Theory Comput 2024;20:2349-2361. [PMID: 38490993 DOI: 10.1021/acs.jctc.4c00137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/18/2024]
4
Wu B, He X, Liu J. Nonadiabatic Field on Quantum Phase Space: A Century after Ehrenfest. J Phys Chem Lett 2024;15:644-658. [PMID: 38205956 DOI: 10.1021/acs.jpclett.3c03385] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2024]
5
Mannouch JR, Richardson JO. A mapping approach to surface hopping. J Chem Phys 2023;158:104111. [PMID: 36922129 DOI: 10.1063/5.0139734] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2023]  Open
6
Amati G, Runeson JE, Richardson JO. On detailed balance in nonadiabatic dynamics: From spin spheres to equilibrium ellipsoids. J Chem Phys 2023;158:064113. [PMID: 36792511 DOI: 10.1063/5.0137828] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]  Open
7
Gelin MF, Chen L, Domcke W. Equation-of-Motion Methods for the Calculation of Femtosecond Time-Resolved 4-Wave-Mixing and N-Wave-Mixing Signals. Chem Rev 2022;122:17339-17396. [PMID: 36278801 DOI: 10.1021/acs.chemrev.2c00329] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
8
Lin K, Peng J, Xu C, Gu FL, Lan Z. Trajectory Propagation of Symmetrical Quasi-classical Dynamics with Meyer-Miller Mapping Hamiltonian Using Machine Learning. J Phys Chem Lett 2022;13:11678-11688. [PMID: 36511563 DOI: 10.1021/acs.jpclett.2c02159] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
9
Hu Z, Liu Z, Sun X. Effects of Heterogeneous Protein Environment on Excitation Energy Transfer Dynamics in the Fenna-Matthews-Olson Complex. J Phys Chem B 2022;126:9271-9287. [PMID: 36327977 DOI: 10.1021/acs.jpcb.2c06605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
10
Hu Z, Sun X. All-Atom Nonadiabatic Semiclassical Mapping Dynamics for Photoinduced Charge Transfer of Organic Photovoltaic Molecules in Explicit Solvents. J Chem Theory Comput 2022;18:5819-5836. [PMID: 36073792 DOI: 10.1021/acs.jctc.2c00631] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
11
Pollak E, Upadhyayula S, Liu J. Coherent state representation of thermal correlation functions with applications to rate theory. J Chem Phys 2022;156:244101. [DOI: 10.1063/5.0088163] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
12
He X, Wu B, Shang Y, Li B, Cheng X, Liu J. New phase space formulations and quantum dynamics approaches. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2022. [DOI: 10.1002/wcms.1619] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
13
Gardner J, Douglas-Gallardo OA, Stark WG, Westermayr J, Janke SM, Habershon S, Maurer RJ. NQCDynamics.jl: A Julia package for nonadiabatic quantum classical molecular dynamics in the condensed phase. J Chem Phys 2022;156:174801. [PMID: 35525649 DOI: 10.1063/5.0089436] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]  Open
14
Saller MAC, Lai Y, Geva E. An Accurate Linearized Semiclassical Approach for Calculating Cavity-Modified Charge Transfer Rate Constants. J Phys Chem Lett 2022;13:2330-2337. [PMID: 35245071 DOI: 10.1021/acs.jpclett.2c00122] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
15
Mannouch JR, Richardson JO. A partially linearized spin-mapping approach for simulating nonlinear optical spectra. J Chem Phys 2022;156:024108. [PMID: 35032975 DOI: 10.1063/5.0077744] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
16
Runeson JE, Richardson JO. Quantum Entanglement from Classical Trajectories. PHYSICAL REVIEW LETTERS 2021;127:250403. [PMID: 35029436 DOI: 10.1103/physrevlett.127.250403] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Revised: 08/20/2021] [Accepted: 11/05/2021] [Indexed: 06/14/2023]
17
Wu D, Hu Z, Li J, Sun X. Forecasting nonadiabatic dynamics using hybrid convolutional neural network/long short-term memory network. J Chem Phys 2021;155:224104. [PMID: 34911307 DOI: 10.1063/5.0073689] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
18
Liu J, He X, Wu B. Unified Formulation of Phase Space Mapping Approaches for Nonadiabatic Quantum Dynamics. Acc Chem Res 2021;54:4215-4228. [PMID: 34756027 DOI: 10.1021/acs.accounts.1c00511] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
19
Hu Z, Brian D, Sun X. Multi-state harmonic models with globally shared bath for nonadiabatic dynamics in the condensed phase. J Chem Phys 2021;155:124105. [PMID: 34598571 DOI: 10.1063/5.0064763] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]  Open
20
He X, Wu B, Gong Z, Liu J. Commutator Matrix in Phase Space Mapping Models for Nonadiabatic Quantum Dynamics. J Phys Chem A 2021;125:6845-6863. [PMID: 34339600 DOI: 10.1021/acs.jpca.1c04429] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
21
Lang H, Vendrell O, Hauke P. Generalized discrete truncated Wigner approximation for nonadiabatic quantum-classical dynamics. J Chem Phys 2021;155:024111. [PMID: 34266254 DOI: 10.1063/5.0054696] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
22
Hu D, Xie Y, Peng J, Lan Z. On-the-Fly Symmetrical Quasi-Classical Dynamics with Meyer-Miller Mapping Hamiltonian for the Treatment of Nonadiabatic Dynamics at Conical Intersections. J Chem Theory Comput 2021;17:3267-3279. [PMID: 34028268 DOI: 10.1021/acs.jctc.0c01249] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
23
Saller MAC, Kelly A, Geva E. Benchmarking Quasiclassical Mapping Hamiltonian Methods for Simulating Cavity-Modified Molecular Dynamics. J Phys Chem Lett 2021;12:3163-3170. [PMID: 33755487 DOI: 10.1021/acs.jpclett.1c00158] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
24
He X, Gong Z, Wu B, Liu J. Negative Zero-Point-Energy Parameter in the Meyer-Miller Mapping Model for Nonadiabatic Dynamics. J Phys Chem Lett 2021;12:2496-2501. [PMID: 33667108 DOI: 10.1021/acs.jpclett.1c00232] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
25
Peng J, Xie Y, Hu D, Lan Z. Analysis of bath motion in MM-SQC dynamics via dimensionality reduction approach: Principal component analysis. J Chem Phys 2021;154:094122. [PMID: 33685149 DOI: 10.1063/5.0039743] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
26
Gao X, Geva E. Improving the Accuracy of Quasiclassical Mapping Hamiltonian Methods by Treating the Window Function Width as an Adjustable Parameter. J Phys Chem A 2020;124:11006-11016. [DOI: 10.1021/acs.jpca.0c09750] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
27
Kim HW, Rhee YM. Two-oscillator mapping modification of the Poisson bracket mapping equation formulation of the quantum-classical Liouville equation. J Chem Phys 2020;153:214103. [PMID: 33291890 DOI: 10.1063/5.0027799] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
28
Mannouch JR, Richardson JO. A partially linearized spin-mapping approach for nonadiabatic dynamics. I. Derivation of the theory. J Chem Phys 2020;153:194109. [DOI: 10.1063/5.0031168] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
29
Mannouch JR, Richardson JO. A partially linearized spin-mapping approach for nonadiabatic dynamics. II. Analysis and comparison with related approaches. J Chem Phys 2020;153:194110. [DOI: 10.1063/5.0031173] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
30
Gao X, Lai Y, Geva E. Simulating Absorption Spectra of Multiexcitonic Systems via Quasiclassical Mapping Hamiltonian Methods. J Chem Theory Comput 2020;16:6465-6480. [DOI: 10.1021/acs.jctc.0c00709] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
31
Gao X, Geva E. A Nonperturbative Methodology for Simulating Multidimensional Spectra of Multiexcitonic Molecular Systems via Quasiclassical Mapping Hamiltonian Methods. J Chem Theory Comput 2020;16:6491-6502. [DOI: 10.1021/acs.jctc.0c00843] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
32
Liu Y, Gao X, Lai Y, Mulvihill E, Geva E. Electronic Dynamics through Conical Intersections via Quasiclassical Mapping Hamiltonian Methods. J Chem Theory Comput 2020;16:4479-4488. [DOI: 10.1021/acs.jctc.0c00177] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
33
Gao X, Saller MAC, Liu Y, Kelly A, Richardson JO, Geva E. Benchmarking Quasiclassical Mapping Hamiltonian Methods for Simulating Electronically Nonadiabatic Molecular Dynamics. J Chem Theory Comput 2020;16:2883-2895. [DOI: 10.1021/acs.jctc.9b01267] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
34
Runeson JE, Richardson JO. Generalized spin mapping for quantum-classical dynamics. J Chem Phys 2020;152:084110. [DOI: 10.1063/1.5143412] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]  Open
35
Berkelbach TC, Thoss M. Special topic on dynamics of open quantum systems. J Chem Phys 2020;152:020401. [DOI: 10.1063/1.5142731] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
36
Zheng J, Xie Y, Jiang S, Long Y, Ning X, Lan Z. Initial sampling in symmetrical quasiclassical dynamics based on Li-Miller mapping Hamiltonian. Phys Chem Chem Phys 2019;21:26502-26514. [PMID: 31777888 DOI: 10.1039/c9cp03975a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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