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Vila FD, Rehr JJ, Pathak H, Peng B, Panyala A, Mutlu E, Bauman NP, Kowalski K. Real-time equation-of-motion CC cumulant and CC Green's function simulations of photoemission spectra of water and water dimer. J Chem Phys 2022; 157:044101. [DOI: 10.1063/5.0099192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Newly developed coupled-cluster (CC) methods enable simulations of ionization potentials and spectral functions of molecular systems in a wide range of energy scales ranging from core-binding to valence. This paper discusses results obtained with the real-time equation-of-motion CC cumulant approach (RT-EOM-CC), and CC Green's function (CCGF) approaches in applications to the water and water dimer molecules. We compare the ionization potentials obtained with these methods for the valence region with the results obtained with the CCSD(T) formulation as a difference of energies for N and N-1 electron systems. All methods show good agreement with each other. They also agree well with experiment, with errors usually below 0.1 eV for the ionization potentials.We also analyze unique features of the spectral functions, associated with the position of satellite peaks, obtained with the RT-EOM-CC and CCGF methods employing single and double excitations, as a function of the monomer OH bond length and the proton transfer coordinate in the dimer. Finally, we analyze the impact of the basis set effects on the quality of calculated ionization potentials and find that the basis set effects are less pronounced for the augmented-type sets.
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Affiliation(s)
| | - John J. Rehr
- Department of Physics, University of Washington College of Arts and Sciences, United States of America
| | - Himadri Pathak
- Pacific Northwest National Laboratory, Pacific Northwest National Laboratory, United States of America
| | - Bo Peng
- Pacific Northwest National Laboratory, United States of America
| | - Ajay Panyala
- Pacific Northwest National Laboratory, United States of America
| | - Erdal Mutlu
- Pacific Northwest National Laboratory, United States of America
| | | | - Karol Kowalski
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, United States of America
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Liu C, Zheng Y, Sanche L. Damage Induced to DNA and Its Constituents by 0-3 eV UV Photoelectrons †. Photochem Photobiol 2021; 98:546-563. [PMID: 34767635 DOI: 10.1111/php.13559] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2021] [Accepted: 11/07/2021] [Indexed: 11/28/2022]
Abstract
The complex physical and chemical interactions between DNA and 0-3 eV electrons released by UV photoionization can lead to the formation of various lesions such as base modifications and cleavage, crosslinks and single strand breaks. Furthermore, in the presence of platinum chemotherapeutic agents, these electrons can cause clustered lesions, including double strand breaks. We explain the mechanisms responsible for these damages via the production 0-3 eV electrons by UVC radiation, and by UV photons of any wavelengths, when they are produced by photoemission from nanoparticles lying within about 10 nm from DNA. We review experimental evidence showing that a single 0-3 eV electron can produce these damages. The foreseen benefits UV-irradiation of nanoparticles targeted to the cell nucleus are mentioned in the context of cancer therapy, as well as the potential hazards to human health when they are present in cells.
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Affiliation(s)
- Chaochao Liu
- State Key Laboratory of Photocatalysis on Energy and Environment, Fuzhou University, Fuzhou, China
| | - Yi Zheng
- State Key Laboratory of Photocatalysis on Energy and Environment, Fuzhou University, Fuzhou, China
| | - Léon Sanche
- Département de Médecine Nucléaire et Radiobiologie et Centre de Recherche Clinique, Faculté de Médecine, Université de Sherbrooke, Sherbrooke, QC, Canada
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Vila FD, Rehr JJ, Kas JJ, Kowalski K, Peng B. Real-Time Coupled-Cluster Approach for the Cumulant Green's Function. J Chem Theory Comput 2020; 16:6983-6992. [PMID: 33108872 DOI: 10.1021/acs.jctc.0c00639] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Green's function methods within many-body perturbation theory provide a general framework for treating electronic correlations in excited states and spectra. Here, we develop the cumulant form of the one-electron Green's function using a real-time coupled-cluster equation-of-motion approach, in an extension of our previous study (Rehr J.; et al. J. Chem. Phys. 2020, 152, 174113). The approach yields a nonperturbative expression for the cumulant in terms of the solution to a set of coupled first-order, nonlinear differential equations. The method thereby adds nonlinear corrections to traditional cumulant methods, which are linear in the self-energy. The approach is applied to the core-hole Green's function and is illustrated for a number of small molecular systems. For these systems, we find that the nonlinear contributions yield significant improvements, both for quasiparticle properties such as core-level binding energies and for inelastic losses that correspond to satellites observed in photoemission spectra.
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Affiliation(s)
- F D Vila
- Department of Physics, University of Washington, Seattle, Washington 98195, United States
| | - J J Rehr
- Department of Physics, University of Washington, Seattle, Washington 98195, United States
| | - J J Kas
- Department of Physics, University of Washington, Seattle, Washington 98195, United States
| | - K Kowalski
- William R. Wiley Environmental Molecular Sciences Laboratory, Battelle, Pacific Northwest National Laboratory, K8-91, P.O. Box 999, Richland, Washington 99352, United States
| | - B Peng
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
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Wasielewski MR, Forbes MDE, Frank NL, Kowalski K, Scholes GD, Yuen-Zhou J, Baldo MA, Freedman DE, Goldsmith RH, Goodson T, Kirk ML, McCusker JK, Ogilvie JP, Shultz DA, Stoll S, Whaley KB. Exploiting chemistry and molecular systems for quantum information science. Nat Rev Chem 2020; 4:490-504. [PMID: 37127960 DOI: 10.1038/s41570-020-0200-5] [Citation(s) in RCA: 205] [Impact Index Per Article: 51.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/27/2020] [Indexed: 12/21/2022]
Abstract
The power of chemistry to prepare new molecules and materials has driven the quest for new approaches to solve problems having global societal impact, such as in renewable energy, healthcare and information science. In the latter case, the intrinsic quantum nature of the electronic, nuclear and spin degrees of freedom in molecules offers intriguing new possibilities to advance the emerging field of quantum information science. In this Perspective, which resulted from discussions by the co-authors at a US Department of Energy workshop held in November 2018, we discuss how chemical systems and reactions can impact quantum computing, communication and sensing. Hierarchical molecular design and synthesis, from small molecules to supramolecular assemblies, combined with new spectroscopic probes of quantum coherence and theoretical modelling of complex systems, offer a broad range of possibilities to realize practical quantum information science applications.
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Affiliation(s)
| | - Malcolm D E Forbes
- Department of Chemistry, Bowling Green State University, Bowling Green, OH, USA
| | - Natia L Frank
- Department of Chemistry, University of Nevada-Reno, Reno, Nevada, USA
| | - Karol Kowalski
- Pacific Northwest National Laboratory, Richland, WA, USA
| | | | - Joel Yuen-Zhou
- Department of Chemistry & Biochemistry, University of California, San Diego, La Jolla, CA, USA
| | - Marc A Baldo
- Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Danna E Freedman
- Department of Chemistry, Northwestern University, Evanston, IL, USA
| | | | - Theodore Goodson
- Department of Chemistry, University of Michigan, Ann Arbor, MI, USA
| | - Martin L Kirk
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, NM, USA
| | - James K McCusker
- Department of Chemistry, Michigan State University, East Lansing, MI, USA
| | | | - David A Shultz
- Department of Chemistry, North Carolina State University, Raleigh, NC, USA
| | - Stefan Stoll
- Department of Chemistry, University of Washington, Seattle, WA, USA
| | - K Birgitta Whaley
- Department of Chemistry, University of California, Berkeley, CA, USA
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