A semi-GCMC simulation study of electrolytic capacitors with adsorbed titrating peptides

The differential capacitance as a probe for the electric double layer structure and the electrolyte bulk composition

In this work, we theoretically study the differential capacitance of an aqueous electrolyte in contact with a planar electrode, using classical density functional theory, and show how this measurable quantity can be used as a probe to better understand the structure and composition of the electric double layer at play. Specifically, we show how small trace amounts of divalent ions can influence the differential capacitance greatly and also how small ions dominate its behavior for high electrode potentials. In this study, we consider primitive model electrolytes and not only use the standard definition of the differential capacitance but also derive a new expression from mechanical equilibrium in a planar geometry. This expression reveals explicitly that the first layer of ions near the charged surface is key to its understanding. Our insights might be used as a guide in experiments to better understand the electrolyte-electrode interface as well as the (composition of the) bulk electrolyte.

Molecular Transfer Model for pH Effects on Intrinsically Disordered Proteins: Theory and Applications

We present a theoretical method to study how changes in pH shape the heterogeneous conformational ensemble explored by intrinsically disordered proteins (IDPs). The theory is developed in the context of coarse-grained models, which enable a fast, accurate, and extensive exploration of conformational space at a given protonation state. In order to account for pH effects, we generalize the molecular transfer model (MTM), in which conformations are re-weighted using the transfer free energy, which is the free energy necessary for bringing to equilibrium in a new environment a "frozen" conformation of the system. Using the semi-grand ensemble, we derive an exact expression of the transfer free energy, which amounts to the appropriate summation over all the protonation states. Because the exact result is computationally too demanding to be useful for large polyelectrolytes or IDPs, we introduce a mean-field (MF) approximation of the transfer free energy. Using a lattice model, we compare the exact and MF results for the transfer free energy and a variety of observables associated with the model IDP. We find that the precise location of the charged groups (the sequence), and not merely the net charge, determines the structural properties. We demonstrate that some of the limitations previously noted for MF theory in the context of globular proteins are mitigated when disordered polymers are studied. The excellent agreement between the exact and MF results poises us to use the method presented here as a computational tool to study the properties of IDPs and other biological systems as a function of pH.