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Bi RH, Dou W. Electronic friction near metal surface: Incorporating nuclear quantum effect with ring polymer molecular dynamics. J Chem Phys 2024; 160:074110. [PMID: 38380747 DOI: 10.1063/5.0187646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Accepted: 01/25/2024] [Indexed: 02/22/2024] Open
Abstract
The molecular dynamics with electronic friction (MDEF) approach can accurately describe nonadiabatic effects at metal surfaces in the weakly nonadiabatic limit. That being said, the MDEF approach treats nuclear motion classically such that the nuclear quantum effects are completely missing in the approach. To address this limitation, we combine Electronic Friction with Ring Polymer Molecular Dynamics (EF-RPMD). In particular, we apply the averaged electronic friction from the metal surface to the centroid mode of the ring polymer. We benchmark our approach against quantum dynamics to show that EF-RPMD can accurately capture zero-point energy as well as transition dynamics. In addition, we show that EF-RPMD can correctly predict the electronic transfer rate near metal surfaces in the tunneling limit as well as the barrier crossing limit. We expect that our approach will be very useful to study nonadiabatic dynamics near metal surfaces when nuclear quantum effects become essential.
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Affiliation(s)
- Rui-Hao Bi
- Department of Chemistry, School of Science, Westlake University, Hangzhou, Zhejiang 310024, China
- Institute of Natural Sciences, Westlake Institute for Advanced Study, Hangzhou, Zhejiang 310024, China
| | - Wenjie Dou
- Department of Chemistry, School of Science, Westlake University, Hangzhou, Zhejiang 310024, China
- Institute of Natural Sciences, Westlake Institute for Advanced Study, Hangzhou, Zhejiang 310024, China
- Department of Physics, School of Science, Westlake University, Hangzhou, Zhejiang 310024, China
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2
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Erpenbeck A, Ke Y, Peskin U, Thoss M. How an electrical current can stabilize a molecular nanojunction. NANOSCALE 2023; 15:16333-16343. [PMID: 37766513 DOI: 10.1039/d3nr02176a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/29/2023]
Abstract
The stability of molecular junctions under transport is of the utmost importance for the field of molecular electronics. This question is often addressed within the paradigm of current-induced heating of nuclear degrees of freedom or current-induced forces acting upon the nuclei. At the same time, an essential characteristic of the failure of a molecular electronic device is its changing conductance - typically from a finite value for the intact device to zero for a device that lost its functionality. In this publication, we focus on the current-induced changes in the molecular conductance, which are inherent to molecular junctions at the limit of mechanical stability. We employ a numerically exact framework based on the hierarchical equations of motion approach, which treats both electronic and nuclear degrees of freedom on an equal footing and does not impose additional assumptions. Studying generic model systems for molecular junctions with dissociative potentials for a wide range of parameters spanning the adiabatic and the nonadiabatic regime, we find that molecular junctions that exhibit a decrease in conductance upon dissociation are more stable than junctions that are more conducting in their dissociated state. This represents a new mechanism that stabilizes molecular junctions under current. Moreover, we identify characteristic signatures in the current of breaking junctions related to the interplay between changes in the conductance and the nuclear configuration and show how these are related to properties of the leads rather than characteristics of the molecule itself.
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Affiliation(s)
- André Erpenbeck
- Department of Physics, University of Michigan, Ann Arbor, Michigan 48109, USA.
| | - Yaling Ke
- Institute of Physics, University of Freiburg, Hermann-Herder-Strasse 3, 79104 Freiburg, Germany
| | - Uri Peskin
- Schulich Faculty of Chemistry, Technion-Israel Institute of Technology, Haifa 32000, Israel
| | - Michael Thoss
- Institute of Physics, University of Freiburg, Hermann-Herder-Strasse 3, 79104 Freiburg, Germany
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Dan X, Shi Q. Theoretical study of nonadiabatic hydrogen atom scattering dynamics on metal surfaces using the hierarchical equations of motion method. J Chem Phys 2023; 159:044101. [PMID: 37486050 DOI: 10.1063/5.0155172] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Accepted: 06/30/2023] [Indexed: 07/25/2023] Open
Abstract
Hydrogen atom scattering on metal surfaces is investigated based on a simplified Newns-Anderson model. Both the nuclear and electronic degrees of freedom are treated quantum mechanically. By partitioning all the surface electronic states as the bath, the hierarchical equations of motion method for the fermionic bath is employed to simulate the scattering dynamics. It is found that, with a reasonable set of parameters, the main features of the recent experimental studies of hydrogen atom scattering on metal surfaces can be reproduced. Vibrational states on the chemisorption state whose energies are close to the incident energy are found to play an important role, and the scattering process is dominated by a single-pass electronic transition forth and back between the diabatic physisorption and chemisorption states. Further study on the effects of the atom-surface coupling strength reveals that, upon increasing the atom-surface coupling strength, the scattering mechanism changes from typical nonadiabatic transitions to dynamics in the electronic friction regime.
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Affiliation(s)
- Xiaohan Dan
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory for Structural Chemistry of Unstable and Stable Species, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun, Beijing 100190, China and University of Chinese Academy of Sciences, Beijing 100049, China
| | - Qiang Shi
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory for Structural Chemistry of Unstable and Stable Species, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun, Beijing 100190, China and University of Chinese Academy of Sciences, Beijing 100049, China
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Cleavage of non-polar C(sp 2)‒C(sp 2) bonds in cycloparaphenylenes via electric field-catalyzed electrophilic aromatic substitution. Nat Commun 2023; 14:293. [PMID: 36653339 PMCID: PMC9849230 DOI: 10.1038/s41467-022-35686-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 12/20/2022] [Indexed: 01/19/2023] Open
Abstract
Electrophilic aromatic substitution (EAS) is one of the most fundamental reactions in organic chemistry. Using an oriented external electric field (OEEF) instead of traditional reagents to tune the EAS reactivity can offer an environmentally friendly method to synthesize aromatic compounds and hold the promise of broadening its scope. Despite these advantages, OEEF catalysis of EAS is difficult to realize, due to the challenge of microscopically orienting OEEF along the direction of electron reorganizations. In this work, we demonstrate OEEF-catalyzed EAS reactions in a series of cycloparaphenylenes (CPPs) using the scanning tunneling microscope break junction (STM-BJ) technique. Crucially, the unique radial π-conjugation of CPPs enables a desired alignment for the OEEF to catalyze the EAS with Au STM tip (or substrate) acting as an electrophile. Under mild conditions, the OEEF-catalyzed EAS reactions can cleave the inherently inert C(sp2)-C(sp2) bond, leading to high-yield (~97%) formation of linear oligophenylenes terminated with covalent Au-C bonds. These results not only demonstrate the feasibility of OEEF catalysis of EAS, but also offer a way of exploring new mechanistic principles of classic organic reactions aided by OEEF.
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Bian X, Chen Z, Sowa JK, Evangeli C, Limburg B, Swett JL, Baugh J, Briggs GAD, Anderson HL, Mol JA, Thomas JO. Charge-State Dependent Vibrational Relaxation in a Single-Molecule Junction. PHYSICAL REVIEW LETTERS 2022; 129:207702. [PMID: 36462006 DOI: 10.1103/physrevlett.129.207702] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Accepted: 10/20/2022] [Indexed: 06/17/2023]
Abstract
The outcome of an electron-transfer process is determined by the quantum-mechanical interplay between electronic and vibrational degrees of freedom. Nonequilibrium vibrational dynamics are known to direct electron-transfer mechanisms in molecular systems; however, the structural features of a molecule that lead to certain modes being pushed out of equilibrium are not well understood. Herein, we report on electron transport through a porphyrin dimer molecule, weakly coupled to graphene electrodes, that displays sequential tunneling within the Coulomb-blockade regime. The sequential transport is initiated by current-induced phonon absorption and proceeds by rapid sequential transport via a nonequilibrium vibrational distribution of low-energy modes, likely related to torsional molecular motions. We demonstrate that this is an experimental signature of slow vibrational dissipation, and obtain a lower bound for the vibrational relaxation time of 8 ns, a value dependent on the molecular charge state.
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Affiliation(s)
- Xinya Bian
- Department of Materials, University of Oxford, Oxford OX1 3PH, United Kingdom
| | - Zhixin Chen
- Department of Materials, University of Oxford, Oxford OX1 3PH, United Kingdom
| | - Jakub K Sowa
- Department of Chemistry, Rice University, Houston, Texas 77005, USA
| | | | - Bart Limburg
- Department of Chemistry, University of Oxford, Oxford OX1 3TA, United Kingdom
| | - Jacob L Swett
- Department of Materials, University of Oxford, Oxford OX1 3PH, United Kingdom
| | - Jonathan Baugh
- Institute for Quantum Computing, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
| | - G Andrew D Briggs
- Department of Materials, University of Oxford, Oxford OX1 3PH, United Kingdom
| | - Harry L Anderson
- Department of Chemistry, University of Oxford, Oxford OX1 3TA, United Kingdom
| | - Jan A Mol
- School of Physical and Chemical Sciences, Queen Mary University, London E1 4NS, United Kingdom
| | - James O Thomas
- Department of Materials, University of Oxford, Oxford OX1 3PH, United Kingdom
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Ke Y, Kaspar C, Erpenbeck A, Peskin U, Thoss M. Nonequilibrium reaction rate theory: Formulation and implementation within the hierarchical equations of motion approach. J Chem Phys 2022; 157:034103. [DOI: 10.1063/5.0098545] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The study of chemical reactions in environments under nonequilibrium conditions has been of interest recently in a variety of contexts, including current-induced reactions in molecular junctions and scanning tunneling microscopy experiments. In this work, we outline a fully quantum mechanical, numerically exact approach to describe chemical reaction rates in such nonequilibrium situations. The approach is based on an extension of the flux correlation function formalism to nonequilibrium conditions and uses a mixed real and imaginary time hierarchical equations of motion approach for the calculation of rate constants. As a specific example, we investigate current-induced intramolecular proton transfer reactions in a molecular junction for different applied bias voltages and molecule-lead coupling strengths.
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Affiliation(s)
- Yaling Ke
- Institute of Physics, Albert-Ludwigs-Universität Freiburg, Germany
| | | | | | - Uri Peskin
- Chemistry, Technion Israel Institute of Technology, Israel
| | - Michael Thoss
- University of Freiburg Institute of Physics, Germany
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Ke Y, Borrelli R, Thoss M. Hierarchical equations of motion approach to hybrid fermionic and bosonic environments: Matrix product state formulation in twin space. J Chem Phys 2022; 156:194102. [DOI: 10.1063/5.0088947] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We extend the twin-space formulation of the hierarchical equations of motion approach in combination with the matrix product state representation (introduced in J. Chem. Phys. 150, 234102, [2019]) to nonequilibrium scenarios where the open quantum system is coupled to a hybrid fermionic and bosonic environment. The key ideas used in the extension are a reformulation of the hierarchical equations of motion for the auxiliary density matrices into a time-dependent Schrödinger-like equation for an augmented multi-dimensional wave function as well as a tensor decomposition into a product of low-rank matrices. The new approach facilitates accurate simulations of non-equilibrium quantum dynamics in larger and more complex open quantum systems. The performance of the method is demonstrated for a model of a molecular junction exhibiting current-induced mode-selective vibrational excitation.
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Affiliation(s)
- Yaling Ke
- Institute of Physics, Albert-Ludwigs-Universität Freiburg, Germany
| | - Raffaele Borrelli
- Department of Agricoltural Science, Università degli Studi di Torino, Italy
| | - Michael Thoss
- University of Freiburg Institute of Physics, Germany
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