Monitoring membranes: The exploration of biological bilayers with second harmonic generation

Role of AcrAB-TolC and Its Components in Influx-Efflux Dynamics of QAC Drugs in Escherichia coli Revealed Using SHG Spectroscopy

Multidrug efflux pumps, especially those belonging to the class of resistance-nodulation-division (RND), are the key contributors to the rapidly growing multidrug resistance in Gram-negative bacteria. Understanding the role of efflux pumps in real-time drug transport dynamics across the complex dual-cell membrane envelope of Gram-negative bacteria is thus crucial for developing efficient antibiotics against them. Here, we employ second harmonic generation-based nonlinear spectroscopy to study the role of the tripartite efflux pump and its individual components. We systematically investigate the effect of periplasmic adaptor protein AcrA, inner membrane transporter protein AcrB, and outer membrane channel TolC on the overall drug transport in live Acr-type Escherichia coli and its mutant strain cells. Our results reveal that when one of its components is missing, the tripartite AcrAB-TolC efflux pump machinery in Escherichia coli can effectively function as a bipartite system, a fact that has never been demonstrated in live Gram-negative bacteria.

Membrane Permeability Dominates over Electrostatic Interactions in Dictating Drug Transport in Osmotically Shocked Escherichia coli

To combat surging multidrug-resistant Gram-negative bacterial infections, better strategies to improve the efficacy of existing drugs are critical. Because the dual membrane cell envelope is the first line of defense for these bacteria, it is crucial to understand the permeation properties of the drugs through it. Our recent study shows that isosmotic conditions prevent drug permeation inside Gram-negative bacteria, Escherichia coli, while hypoosmotic stress enhances the process. Here, we unravel the reason behind such differential drug penetration. Specifically, we dissect the roles of electrostatic screening and low membrane permeability in the penetration failure of drugs under osmotically balanced conditions. We compare the transport of a quaternary ammonium compound malachite green in the presence of an electrolyte (NaCl) and a wide variety of commonly used organic osmolytes, e.g., sucrose, proline, glycerol, sorbitol, and urea. These osmolytes of different membrane permeability (i.e., nonpermeable sucrose and NaCl, freely permeable urea and glycerol, and partially permeable proline and sorbitol) clarify the role of osmotic stress in cell envelope permeability. The results showcase that under balanced osmotic conditions, drug molecules fail to penetrate inside E. coli cells because of low membrane permeabilities and not because of electrostatic screening imposed by the osmolytes. Contribution of the electrostatic interactions, however, cannot be completely overruled as at osmotically imbalanced conditions, drug transport across the bacterial subcellular compartments is found to be dependent on the osmolytes used.

Differences in Lipid Order and Dynamics in Plasma Membranes Assessed by Nonlinear Optical Microscopy

When amphiphilic polar dyes were added to the cells, they intercalated predominantly in the outer leaf of the plasma membrane, making them active for second harmonic generation (SHG). The fluorescence of the dye enabled simultaneous 3D imaging of SHG and two-photon excited fluorescence (TPF). Because SHG intensity is sensitive to the alignment of the dyes, which reflects lipid ordering in the plasma membrane, we assessed the difference in lipid ordering by comparing the SHG intensity normalized to the TPF intensity. Together with an enzyme release assay that detects pore formation in the plasma membrane, our SHG assay revealed how polycations affect lipid ordering at low concentrations, where membrane damage has not yet been examined. By scaling the results of the assays with the charge concentration of the two polycations, polyethylenimine (PEI) and poly-l-lysine (PLL), we found that PEI reduced the lipid order more than PLL, and PLL formed more pores than PEI. A comparison of the SHG and TPF images of the wounded cells revealed that one of the lipid dynamics (flip-flop) was significantly enhanced in the bleb membrane. Moreover, the SHG assay indicated that the biocompatible polymer, poly(N-(2-hydroxypropyl)methacrylamide), did not affect the lipid order. Thus, our technique allows the assessment of the plasma membrane structure at the molecular level.

Multimillion Atom Simulations of Di-8-ANEPPS Chromophores Embedded in a Model Plasma Membrane: Toward the Investigation of Realistic Dyed Cell Membranes

A multistep computational approach has been employed to study a multimillion all-atom dyed plasma membrane, with no less than 42 different lipid species spanning the major head groups and a variety of fatty acids, as well as cholesterol, with the objective of investigating its structure and dynamics, as well as its impact on the embedded di-8-ANEPPS dyes. The latter are commonly used as bioimaging probes and serve as local microscopes. So, they provide information on membrane morphology via their second harmonic nonlinear optical (NLO) responses, which have the advantage of being specific to interface regions and sensitive to the chromophore environment. In previous studies, this chromophore has only been studied in simpler membrane models, far from the complexity of real lipid bilayers, while, owing to the ever-increasing computational resources, multimillion lipid bilayers have been studied, giving access to the effects of its heterogeneity. First, using molecular dynamics (MD) simulations, it is found that the combination of lipids produces a more ordered and denser membrane compared to its homogeneous model counterparts, while the local environment of the embedded dyes becomes enriched in phosphatidylcholine. Subsequently, the second harmonic first hyperpolarizability of the probes was calculated at the TDDFT level on selected frames of MD, highlighting the influence of the lipid environment. Due to the complexity of the system, machine learning (ML) tools have been employed to establish relationships between the membrane structural parameters, the orientation of the probes, and their NLO responses. These ML approaches have revealed influential features, including the presence of diacylglycerol lipids close to the dye. On the whole, this work provides a first step toward understanding the cooperation, synergy, and interactions that occur in such complex guest-host environments, which have emerged as new targets for drug design and membrane lipid therapy.

Effects of nonlinearity and a new nonlinear resonance in two-path phonon transmittance in lattices with two-dimensional arrays of atomic defects

The paper is devoted to analytical and numerical studies of the effects of nonlinearity on the two-path phonon interference in the transmission through two-dimensional arrays of atomic defects embedded in a lattice. The emergence of transmission antiresonance (transmission node) in the two-path system is demonstrated for the few-particle nanostructures, which allow us to model both linear and nonlinear phonon transmission antiresonances. The universality of destructive-interference origin of transmission antiresonances of waves of different nature, such as phonons, photons, and electrons, in two-path nanostructures and metamaterials is emphasized. Generation of the higher harmonics as a result of the interaction of lattice waves with nonlinear two-path atomic defects is considered, and the full system of nonlinear algebraic equations is obtained to describe the transmission through nonlinear two-path atomic defects with an account for the generation of second and third harmonics. Expressions for the coefficients of lattice energy transmission through and reflection from the embedded nonlinear atomic systems are derived. It is shown that the quartic interatomic nonlinearity shifts the antiresonance frequency in the direction determined by the sign of the nonlinear coefficient and enhances in general the transmission of high-frequency phonons due to third harmonic generation and propagation. The effects of the quartic nonlinearity on phonon transmission are described for the two-path atomic defects with a different topology. Transmission through the nonlinear two-path atomic defects is also modeled with the simulation of the phonon wave packet, for which the proper amplitude normalization is proposed and implemented. It is shown that the cubic interatomic nonlinearity red shifts in general the antiresonance frequency for longitudinal phonons independently of the sign of the nonlinear coefficient, and the equilibrium interatomic distances (bond lengths) in the atomic defects are changed by the incident phonon due to cubic interatomic nonlinearity. For longitudinal phonons incident on a system with the cubic nonlinearity, the new narrow transmission resonance on the background of a broad antiresonance is predicted to emerge, which we relate to the opening of the additional transmission channel for the phonon second harmonic through the nonlinear defect atoms. Conditions of the existence of the new nonlinear transmission resonance are determined and demonstrated for different two-path nonlinear atomic defects. A two-dimensional array of embedded three-path defects with an additional weak transmission channel, in which a linear analog of the nonlinear narrow transmission resonance on the background of a broad antiresonance is realized, is proposed and modeled. The presented results provide better understanding and detailed description of the interplay between the interference and nonlinearity in phonon propagation through and scattering in two-dimensional arrays of two-path anharmonic atomic defects with a different topology.