Sequential Oxidative α-Cyanation/Anti-Markovnikov Hydroalkoxylation of Allylamines

Iron-catalyzed oxidative α-cyanations at tertiary allylamines in the allylic position are followed by anti-Markovnikov additions of alcohols across the vinylic CC double bonds of the initially generated α-amino nitriles. These consecutive reactions generate 2-amino-4-alkoxybutanenitriles from three reactants (allylamines, trimethylsilyl cyanide, and alcohols) in one reaction vessel at ambient temperature.

Progressive Docking: A Hybrid QSAR/Docking Approach for Accelerating In Silico High Throughput Screening

A combination of protein-ligand docking and ligand-based QSAR approaches has been elaborated, aiming to speed-up the process of virtual screening. In particular, this approach utilizes docking scores generated for already processed compounds to build predictive QSAR models that, in turn, assess hypothetical target binding affinities for yet undocked entries. The "progressive docking" has been tested on drug-like substances from the NCI database that have been docked into several unrelated targets, including human sex hormone binding globulin (SHBG), carbonic anhydrase, corticosteroid-binding globulin, SARS 3C-like protease, and HIV1 reverse transcriptase. We demonstrate that progressive docking can reduce the amount of computations 1.2- to 2.6-fold (when compared to traditional docking), while maintaining 80-99% hit recovery rates. This progressive-docking procedure, therefore, substantially accelerates high throughput screening, especially when using high accuracy (slower) docking approaches and large-sized datasets, and has allowed us to identify several novel potent nonsteroidal SHBG ligands.

Remote substituent effects on homolytic bond dissociation energies

In the study we tried to answer two questions. First, does X-Z homolytic bond dissociation energy (BDE) of Y-C6H4-X-Z obey the Hammett relationship? Second, if it does what factors determine the magnitude and sign of the slope (rho+) of Hammett regression against substituent sigma(p)(+) constants? We collected a large number of X-Z BDEs for over one-thousand Y-C6H4-X-Z systems using the RMP2/6-311++G**//UB3LYP/6-31G* method. We found that remote substituent effects on X-Z BDEs are determined by both the ground effect (i.e. stabilization/destabilization of X-Z by the substituents) and the radical effect (i.e. stabilization/destabilization of X. by the substituents). The ground or radical effect is determined by the electron demand of X-Z or X. in the same way as the deprotonation enthalpy of HOOC-C6H4-X-Z or HOOC-C6H4-X. is affected by X-Z or X. . As a result, rho+ (BDE) for X-Z bond homolysis can be quantitatively predicted by using the change in deprotonation enthalpy from HOOC-C6H4-X-Z to HOOC-C6H4-X. .

Effects of alpha-ammonium, alpha-phosphonium, and alpha-sulfonium groups on C-H bond dissociation energies

C-H bond dissociation energies of alpha-ammonium-, alpha-phosphonium-, or alpha-sulfonium-substituted methanes and toluenes were calculated to a precision of 1-2 kcal/mol. It was found that alpha-ammonium, alpha-phosphonium, and alpha-sulfonium groups all destabilize a methyl radical. alpha-Ammonium also destabilizes a benzyl radical, whereas alpha-phosphonium and alpha-sulfonium either slightly stabilize or destabilize a benzyl radical depending on their alkylation state.