Delimiting cryptic species within the brown-banded bamboo shark, Chiloscyllium punctatum in the Indo-Australian region with mitochondrial DNA and genome-wide SNP approaches

Background

Delimiting cryptic species in elasmobranchs is a major challenge in modern taxonomy due the lack of available phenotypic features. Employing stand-alone genetics in splitting a cryptic species may prove problematic for further studies and for implementing conservation management. In this study, we examined mitochondrial DNA and genome-wide nuclear single nucleotide polymorphisms (SNPs) in the brown-banded bambooshark, Chiloscyllium punctatum to evaluate potential cryptic species and the species-population boundary in the group.

Results

Both mtDNA and SNP analyses showed potential delimitation within C. punctatum from the Indo-Australian region and consisted of four operational taxonomic units (OTUs), i.e. those from Indo-Malay region, the west coast of Sumatra, Lesser Sunda region, and the Australian region. Each OTU can be interpreted differently depending on available supporting information, either based on biological, ecological or geographical data. We found that SNP data provided more robust results than mtDNA data in determining the boundary between population and cryptic species.

Conclusion

To split a cryptic species complex and erect new species based purely on the results of genetic analyses is not recommended. The designation of new species needs supportive diagnostic morphological characters that allow for species recognition, as an inability to recognise individuals in the field creates difficulties for future research, management for conservation and fisheries purposes. Moreover, we recommend that future studies use a comprehensive sampling regime that encompasses the full range of a species complex. This approach would increase the likelihood of identification of operational taxonomic units rather than resulting in an incorrect designation of new species.

Supplementary Information

The online version contains supplementary material available at 10.1186/s12862-021-01852-3.

Gastrointestinal helminth parasites of the common wallaroo or euro, Osphranter robustus (Gould) (Marsupialia: Macropodidae) from Australia

The gastrointestinal helminth parasites of 170 common wallaroos or euros, Osphranter robustus (Gould), collected from all mainland states in which the species occurs as well as the Northern Territory, are presented, including previously published data. A total of 65 species of helminths were encountered, including four species of anoplocephalid cestodes found in the bile ducts and small intestine, and 61 species of strongylid nematodes, all but two of which occurring in the stomach, and with the remainder occurring in the terminal ileum, caecum and colon. Among the mainland subspecies of O. robustus, 52 species of helminths were encountered in O. r. robustus, compared with 30 species in O. r. woodwardi and 35 species in O. r. erubescens. Of the parasite species encountered, only 17 were specific to O. robustus, the remaining being shared with sympatric host species. Host-specific species or species occurring in O. robustus at a high prevalence can be classified as follows: widely distributed; restricted to northern Australia; restricted to the northern wallaroo, O. r. woodwardi; found only in the euro, O. r. erubescens; found essentially along the eastern coast of Australia, primarily in O. r. robustus; and species with highly limited regional distributions. The data currently available suggest that the acquisition of a significant number of parasites is due to co-grazing with other macropodids, while subspeciation in wallaroos as well as climatic variables may have influenced the diversification of the parasite fauna.

Habitat selection in a peri-urban area by a large mammal indicates a low potential for human–wildlife conflict

Abstract ContextIn Australia, various species of macropods (family Macropodidae) are known to occur within peri-urban areas, where they can be a source of human–wildlife conflict. Some species, such as the eastern grey kangaroo (Macropus giganteus), have received considerable research attention over the past few years following demands from land managers for evidence-based management guidelines; however, the ecology of other macropod species found in peri-urban areas, such as the eastern wallaroo (Osphranter robustus robustus), remains poorly understood. AimsThe aims were to determine the home range of male and female eastern wallaroos and assess habitat selection in order to define whether wallaroos in a peri-urban environment should be viewed as thriving (‘matrix-occupying’), persisting (‘matrix-sensitive’) or struggling (‘urban-sensitive’). MethodsHome range and habitat use of six adult male, five adult female and one subadult male eastern wallaroo were investigated using GPS telemetry between October 2017 and May 2018 in the south-west of Sydney. Key resultsHome ranges (mean±s.e.) of males (63.1±10.2ha) were significantly larger than those of females (31.1±3.3ha). Every adult wallaroo had highly overlapping monthly home ranges, indicating strong site fidelity in all individuals. Eastern wallaroos selected habitats based on vegetation composition during the night and canopy cover during the day. Grassland and open native woodlands were preferred during foraging activities at night. By contrast, human-modified habitats, including hard surfaces and lawns, were avoided at all times by all individuals. ConclusionThe results indicate that eastern wallaroos avoid human-modified features in the landscape, so they could be viewed as persisting (‘matrix-sensitive’) in peri-urban areas. ImplicationsCompared with matrix-occupying macropods, such as the eastern grey kangaroo, the eastern wallaroo is less likely to cause human–wildlife conflicts – a result of its avoidance of human-modified habitat. Land-use planning, involving green corridors linking remnant vegetation, should be implemented as part of urban planning to enable the persistence of diverse mammal populations in urban areas, particularly matrix-sensitive species.