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Abstract
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Fluorinated
carbohydrates have found many applications in the glycosciences.
Typically, these contain fluorination at a single position. There
are not many applications involving polyfluorinated carbohydrates,
here defined as monosaccharides in which more than one carbon has
at least one fluorine substituent directly attached to it, with the
notable exception of their use as mechanism-based inhibitors. The
increasing attention to carbohydrate physical properties, especially
around lipophilicity, has resulted in a surge of interest for this
class of compounds. This review covers the considerable body of work
toward the synthesis of polyfluorinated hexoses, pentoses, ketosugars,
and aminosugars including sialic acids and nucleosides. An overview
of the current state of the art of their glycosidation is also provided.
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Affiliation(s)
- Kler Huonnic
- School of Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ, U.K
| | - Bruno Linclau
- School of Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ, U.K.,Department of Organic and Macromolecular Chemistry, Ghent University, Campus Sterre, Krijgslaan 281-S4, Ghent, 9000, Belgium
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2
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Linclau B, Ardá A, Reichardt NC, Sollogoub M, Unione L, Vincent SP, Jiménez-Barbero J. Fluorinated carbohydrates as chemical probes for molecular recognition studies. Current status and perspectives. Chem Soc Rev 2021; 49:3863-3888. [PMID: 32520059 DOI: 10.1039/c9cs00099b] [Citation(s) in RCA: 63] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
This review provides an extensive summary of the effects of carbohydrate fluorination with regard to changes in physical, chemical and biological properties with respect to regular saccharides. The specific structural, conformational, stability, reactivity and interaction features of fluorinated sugars are described, as well as their applications as probes and in chemical biology.
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Affiliation(s)
- Bruno Linclau
- School of Chemistry, University of Southampton, Highfield, Southampton SO171BJ, UK
| | - Ana Ardá
- CIC bioGUNE, Basque Research and Technology Alliance (BRTA), 48160 Derio, Spain.
| | | | - Matthieu Sollogoub
- Sorbonne Université, CNRS, Institut Parisien de Chimie Moléculaire, UMR 8232, 4 place Jussieu, 75005 Paris, France
| | - Luca Unione
- Department of Chemical Biology and Drug Discovery, Utrecht Institute for Pharmaceutical Science, Utrecht University, Universiteitsweg 99, 3584 CG, Utrecht, The Netherlands
| | - Stéphane P Vincent
- Department of Chemistry, Laboratory of Bio-organic Chemistry, University of Namur (UNamur), B-5000 Namur, Belgium
| | - Jesús Jiménez-Barbero
- CIC bioGUNE, Basque Research and Technology Alliance (BRTA), 48160 Derio, Spain. and Ikerbasque, Basque Foundation for Science, Maria Diaz de Haro 3, 48013 Bilbao, Spain and Department of Organic Chemistry II, Faculty of Science and Technology, UPV/EHU, 48940 Leioa, Spain
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3
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St-Gelais J, Côté É, Lainé D, Johnson PA, Giguère D. Addressing the Structural Complexity of Fluorinated Glucose Analogues: Insight into Lipophilicities and Solvation Effects. Chemistry 2020; 26:13499-13506. [PMID: 32652740 DOI: 10.1002/chem.202002825] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Indexed: 01/24/2023]
Abstract
In this work, we synthesized all mono-, di-, and trifluorinated glucopyranose analogues at positions C-2, C-3, C-4, and C-6. This systematic investigation allowed us to perform direct comparison of 19 F resonances of fluorinated glucose analogues and also to determine their lipophilicities. Compounds with a fluorine atom at C-6 are usually the most hydrophilic, whereas those with vicinal polyfluorinated motifs are the most lipophilic. Finally, the solvation energies of fluorinated glucose analogues were assessed for the first time by using density functional theory. This method allowed the log P prediction of fluoroglucose analogues, which was comparable to the C log P values obtained from various web-based programs.
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Affiliation(s)
- Jacob St-Gelais
- Département de Chimie, Université Laval, 1045 av. De la Médecine, Québec City, QC, G1V 0A6, Canada
| | - Émilie Côté
- Département de Chimie, Université Laval, 1045 av. De la Médecine, Québec City, QC, G1V 0A6, Canada
| | - Danny Lainé
- Département de Chimie, Université Laval, 1045 av. De la Médecine, Québec City, QC, G1V 0A6, Canada
| | - Paul A Johnson
- Département de Chimie, Université Laval, 1045 av. De la Médecine, Québec City, QC, G1V 0A6, Canada
| | - Denis Giguère
- Département de Chimie, Université Laval, 1045 av. De la Médecine, Québec City, QC, G1V 0A6, Canada
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St-Gelais J, Bouchard M, Denavit V, Giguère D. Synthesis and Lipophilicity of Trifluorinated Analogues of Glucose. J Org Chem 2019; 84:8509-8522. [DOI: 10.1021/acs.joc.9b00795] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Jacob St-Gelais
- Département de Chimie, Université Laval, PROTEO, RQRM, 1045 Avenue De la Médecine, Québec City, Quebec, Canada G1V 0A6
| | - Megan Bouchard
- Département de Chimie, Université Laval, PROTEO, RQRM, 1045 Avenue De la Médecine, Québec City, Quebec, Canada G1V 0A6
| | - Vincent Denavit
- Département de Chimie, Université Laval, PROTEO, RQRM, 1045 Avenue De la Médecine, Québec City, Quebec, Canada G1V 0A6
| | - Denis Giguère
- Département de Chimie, Université Laval, PROTEO, RQRM, 1045 Avenue De la Médecine, Québec City, Quebec, Canada G1V 0A6
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Denavit V, Lainé D, Bouzriba C, Shanina E, Gillon É, Fortin S, Rademacher C, Imberty A, Giguère D. Stereoselective Synthesis of Fluorinated Galactopyranosides as Potential Molecular Probes for Galactophilic Proteins: Assessment of Monofluorogalactoside-LecA Interactions. Chemistry 2019; 25:4478-4490. [PMID: 30690814 DOI: 10.1002/chem.201806197] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2018] [Indexed: 11/07/2022]
Abstract
The replacement of hydroxyl groups by fluorine atoms on hexopyranoside scaffolds may allow access to invaluable tools for studying various biochemical processes. As part of ongoing activities toward the preparation of fluorinated carbohydrates, a systematic investigation involving the synthesis and biological evaluation of a series of mono- and polyfluorinated galactopyranosides is described. Various monofluorogalactopyranosides, a trifluorinated, and a tetrafluorinated galactopyranoside have been prepared using a Chiron approach. Given the scarcity of these compounds in the literature, in addition to their synthesis, their biological profiles were evaluated. Firstly, the fluorinated compounds were investigated as antiproliferative agents using normal human and mouse cells in comparison with cancerous cells. Most of the fluorinated compounds showed no antiproliferative activity. Secondly, these carbohydrate probes were used as potential inhibitors of galactophilic lectins. The first transverse relaxation-optimized spectroscopy (TROSY) NMR experiments were performed on these interactions, examining chemical shift perturbations of the backbone resonances of LecA, a virulence factor from Pseudomonas aeruginosa. Moreover, taking advantage of the fluorine atom, the 19 F NMR resonances of the monofluorogalactopyranosides were directly monitored in the presence and absence of LecA to assess ligand binding. Lastly, these results were corroborated with the binding potencies of the monofluorinated galactopyranoside derivatives by isothermal titration calorimetry experiments. Analogues with fluorine atoms at C-3 and C-4 showed weaker affinities with LecA as compared to those with the fluorine atom at C-2 or C-6. This research has focused on the chemical synthesis of "drug-like" low-molecular-weight inhibitors that circumvent drawbacks typically associated with natural oligosaccharides.
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Affiliation(s)
- Vincent Denavit
- Département de Chimie, PROTEO, RQRM, Université Laval, 1045 Avenue de la Médecine, Quebec City, QC, G1V 0A6, Canada
| | - Danny Lainé
- Département de Chimie, PROTEO, RQRM, Université Laval, 1045 Avenue de la Médecine, Quebec City, QC, G1V 0A6, Canada
| | - Chahrazed Bouzriba
- Oncology Division, Hôpital Saint-François d'Assise, CHU de Québec-Université Laval Research Center, 10 rue de l'Espinay, Quebec City, QC, G1L 3L5, Canada
- Faculté de Pharmacie, Université Laval, Quebec City, QC, G1V 0A6, Canada
| | - Elena Shanina
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14424, Potsdam, Germany
| | - Émilie Gillon
- Univ. Grenoble Alpes, CNRS, CERMAV, 38000, Grenoble, France
| | - Sébastien Fortin
- Oncology Division, Hôpital Saint-François d'Assise, CHU de Québec-Université Laval Research Center, 10 rue de l'Espinay, Quebec City, QC, G1L 3L5, Canada
- Faculté de Pharmacie, Université Laval, Quebec City, QC, G1V 0A6, Canada
| | - Christoph Rademacher
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14424, Potsdam, Germany
| | - Anne Imberty
- Univ. Grenoble Alpes, CNRS, CERMAV, 38000, Grenoble, France
| | - Denis Giguère
- Département de Chimie, PROTEO, RQRM, Université Laval, 1045 Avenue de la Médecine, Quebec City, QC, G1V 0A6, Canada
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Santschi N, Aiguabella N, Lewe V, Gilmour R. Delineating the physical organic profile of the 6-fluoro glycosyl donor. J Fluor Chem 2015. [DOI: 10.1016/j.jfluchem.2015.06.004] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Santschi N, Gilmour R. Comparative Analysis of Fluorine-Directed Glycosylation Selectivity: Interrogating C2 [OH → F] Substitution ind-Glucose andd-Galactose. European J Org Chem 2015. [DOI: 10.1002/ejoc.201501081] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Adams BT, Niccoli S, Chowdhury MA, Esarik ANK, Lees SJ, Rempel BP, Phenix CP. N-Alkylated aziridines are easily-prepared, potent, specific and cell-permeable covalent inhibitors of human β-glucocerebrosidase. Chem Commun (Camb) 2015; 51:11390-3. [DOI: 10.1039/c5cc03828f] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
N-Octyl conduritol aziridine is a potent and specific covalent inactivator of β-glucocerebrosidase (GBA1) inside live human cells.
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Affiliation(s)
- B. T. Adams
- Thunder Bay Regional Research Institute
- Ontario
- Canada
| | - S. Niccoli
- Northern Ontario School of Medicine
- Thunder Bay Campus
- Thunder Bay Ontario
- Canada P7B 5E1
| | | | | | - S. J. Lees
- Northern Ontario School of Medicine
- Thunder Bay Campus
- Thunder Bay Ontario
- Canada P7B 5E1
| | - B. P. Rempel
- Department of Science
- Augustana Faculty
- University of Alberta
- Alberta
- Canada
| | - C. P. Phenix
- Thunder Bay Regional Research Institute
- Ontario
- Canada
- Northern Ontario School of Medicine
- Thunder Bay Campus
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Bresciani S, Lebl T, Slawin AMZ, O'Hagan D. Fluorosugars: synthesis of the 2,3,4-trideoxy-2,3,4-trifluoro hexose analogues of d-glucose and d-altrose and assessment of their erythrocyte transmembrane transport. Chem Commun (Camb) 2010; 46:5434-6. [DOI: 10.1039/c0cc01128b] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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