Comparative genomics of two ecologically differential populations of Hibiscus tiliaceus under salt stress

A comparative analysis of photosynthetic function and reactive oxygen species metabolism responses in two hibiscus cultivars under saline conditions

Hibiscus (Hibiscus syriacus Linn.) is considered to be an important flowering shrub in Asia, and has high medicinal value. However, there are few studies on its cultivation and application in salinity soils. To understand the photosynthetic adaptive strategies employed by hibiscus to deal with saline conditions, the potential tolerant [H. syriacus 'Duede Brabaul' (DB)] and sensitive [H. syriacus 'Blueberry Smoothie' (BS)] cultivars were grown under 0-200 mM NaCl concentrations followed by a comprehensive assessment of their photosynthetic function and reactive oxygen species (ROS) metabolism. NaCl treatment significantly reduced the chlorophyll content of the two hibiscus cultivars, and the photosynthetic carbon assimilation capacity of the hibiscus leaves decreased, which was a result of stomatal and nonstomatal limiting factors. With the extension of NaCl stress days, nonphotochemical quenching (NPQ) can be significantly increased, which can effectively activate the nonradiant heat energy dissipation mechanism to release excess excitation energy to reduce the damage from the stressful environment and protect itself. Moreover, DB showed high antioxidant activities of reduced glutathione, and lower accumulation of ROS compared to BS. Taken together, this work suggests that the greater oxidative damage of the sensitive cultivar BS leaves is an important reason for its higher degree of photoinhibition to PSII than those of the tolerant cultivar DB leaves under NaCl stress.

Two-State Co-Expression Network Analysis to Identify Genes Related to Salt Tolerance in Thai rice

Khao Dawk Mali 105 (KDML105) rice is one of the most important crops of Thailand. It is a challenging task to identify the genes responding to salinity in KDML105 rice. The analysis of the gene co-expression network has been widely performed to prioritize significant genes, in order to select the key genes in a specific condition. In this work, we analyzed the two-state co-expression networks of KDML105 rice under salt-stress and normal grown conditions. The clustering coefficient was applied to both networks and exhibited significantly different structures between the salt-stress state network and the original (normal-grown) network. With higher clustering coefficients, the genes that responded to the salt stress formed a dense cluster. To prioritize and select the genes responding to the salinity, we investigated genes with small partners under normal conditions that were highly expressed and were co-working with many more partners under salt-stress conditions. The results showed that the genes responding to the abiotic stimulus and relating to the generation of the precursor metabolites and energy were the great candidates, as salt tolerant marker genes. In conclusion, in the case of the complexity of the environmental conditions, gaining more information in order to deal with the co-expression network provides better candidates for further analysis.