Informing Wildlife Corridor Creation through Population Genetics of an Arboreal Marsupial in a Fragmented Landscape

Habitat loss and fragmentation contribute significantly to the decline of arboreal mammal populations. As populations become fragmented and isolated, a reduction in gene flow can result in a loss of genetic diversity and have an overall impact upon long-term persistence. Creating wildlife corridors can mitigate such effects by increasing the movement and dispersal of animals, thus acting to reduce population isolation. To evaluate the success of a corridor, a before-after experimental research framework can be used. Here, we report the genetic diversity and structure of sugar glider (Petaurus breviceps) sampling locations within a fragmented landscape prior to the implementation of a wildlife corridor. This study used 5999 genome-wide SNPs from 94 sugar gliders caught from 8 locations in a fragmented landscape in south-eastern New South Wales, Australia. Overall genetic structure was limited, and gene flow was detected across the landscape. Our findings indicate that the study area contains one large population. A major highway dissecting the landscape did not act as a significant barrier to dispersal, though this may be because of its relatively new presence in the landscape (completed in 2018). Future studies may yet indicate its long-term impact as a barrier to gene flow. Future work should aim to repeat the methods of this study to examine the medium-to-long-term impacts of the wildlife corridor on sugar gliders, as well as examine the genetic structure of other native, specialist species in the landscape.

Conservation genomics of an endangered arboreal mammal following the 2019-2020 Australian megafire

The impacts of a changing climate threaten species, populations and ecosystems. Despite these significant and large-scale impacts on threatened species, many remain understudied and have little to no genetic information available. The greater glider, Petauroides volans, is an endangered species highly sensitive to the predicted changes in temperature under a changing climate and was recently severely impacted by a megafire natural disaster (85% estimated population loss). Baseline genetic data is essential for conservation management and for detecting detrimental changes in fire-effected populations. We collected genetic samples within 2 years post the 2019-2020 catastrophic Australian bushfires to examine adaptive potential, baseline genetic diversity and population structure, across their southern range in the state of New South Wales. Population genomic analyses were conducted using 8493 genome-wide SNPs for 86 greater glider individuals across 14 geographic locations. Substantial genetic structure was detected across locations, with low genetic diversity and effective population sizes observed in isolated areas. Additionally, we found signals of putative adaptation in response to temperature in greater gliders using a genotype-environment association analysis. These findings have important implications for the management of greater glider populations by identifying at-risk populations and identifying adaptive potential. We demonstrate the importance of baseline genetic information for endangered species as a practical approach to conservation. This is particularly important given the threat that changes in temperatures and megafire events, as predicted under a changing climate, poses for this species.

Overlapping den tree selection by three declining arboreal mammal species in an Australian tropical savanna

Tree cavities are important denning sites for many arboreal mammals. Knowledge of cavity requirements of individual species, as well as potential den overlap among species, is integral to their conservation. In Australia’s tropical savannas, development of tree cavities is enhanced by high termite activity, and, conversely, reduced by frequent fires. However, it is poorly understood how the availability of tree cavities in the tropical savannas impacts tree cavity use and selection by cavity-dependent fauna. There has been a severe decline among arboreal mammal species in northern Australia over recent decades. Investigation of their cavity requirements may illuminate why these species have declined drastically in some areas but are persisting in others. Here we examined this issue in three species of arboreal mammals (Trichosurus vulpecula, Mesembriomys gouldii, Conilurus penicillatus) on Melville Island, northern Australia. We radiotracked individuals to their den sites to evaluate whether the species differ in their den tree and tree-cavity selection. The strongest influence on den tree selection was the presence of large cavities (> 10 cm entrance diameter), with all three species using larger cavities most frequently. Conilurus penicillatus, the smallest species, differed the most from the other species: it frequently was found in smaller, dead trees and its den sites were closer to the ground, including in hollow logs. The two larger species had broader den tree use, using larger live trees and dens higher up in the canopy. Dens of C. penicillatus are likely to be more susceptible to predation and destruction by high-intensity savanna fires. This may have contributed to this species’ rapid decline, both on Melville Island and on the mainland. However, the apparent preference for larger tree cavities by all three arboreal species is concerning due to the limited availability of large trees across Australian savannas, which are subject to frequent, high-intensity fires.

Does temperature variation influence nest box use by the eastern pygmy-possum?

Cavity-using birds and mammals reliant on nest boxes may be negatively affected by the poor thermal buffering of nest boxes. I investigated whether nest box use by the eastern pygmy-possum (Cercartetus nanus) over a 4-year period was influenced by maximum ambient temperature, which ranged from 15.6 to 34.9°C during survey occasions. Occupancy modelling of 144 site detections over 30 survey occasions suggested that a model that included maximum temperature had little support whereas a model involving time-varying detection (i.e. detection differed across sample occasions) was the most plausible. I also investigated how temperatures in nest boxes and tree hollows varied over the four hottest days of summer, including one day when the temperature reached 40.6°C. Maximum temperatures were 3–4°C cooler in plywood nest boxes and 5–8°C cooler in tree hollows compared with ambient temperatures. Together, these results suggest that eastern pygmy-possums using nest boxes in coastal areas are unlikely to experience heat stress. Cavity-using species are a heterogeneous group such that empirical studies are required to identify those that may be vulnerable to heat stress if nest boxes are used to provide population support.

Characteristics of the den trees of the yellow-bellied glider in western Victoria

Effective management of tree-hollow-dependent wildlife is enhanced by detailed knowledge of the trees used for shelter and breeding. We describe the characteristics of 52 den trees and hollows (cavities) used by the yellow-bellied glider (Petaurus australis) in the south-west of its geographic range. We compared the following attributes of den trees to reference trees: tree height, diameter at breast height, hollow entrance height, hollow entrance diameter, cavity diameter, cavity depth, cavity roof height and cavity wall thickness. Dens and reference trees showed a highly significant multivariate difference (P<0.001), with these variables explaining 64% of the variance. Univariate analyses revealed that hollow entrance height was significantly different between den trees (9.0±0.5m) and reference trees (5.5±0.3m). While not significant, den trees tended to have narrower hollow entrances, deeper cavities and thinner walls than reference trees; cavities used by yellow-bellied gliders, on average, measured 36.8cm deep and 18.0cm in diameter, and had entrances 10.6cm in diameter. These observations should assist forest management for this species.

Temperature variation in nest boxes in eastern Australia

Nest boxes are frequently installed in Australia to provide shelter sites for arboreal mammals. Little is known about the temperatures that may be experienced inside nest boxes or the factors that may influence those temperatures. I established paired nest boxes on the south-east and north-west sides of trees at two locations in south-east Queensland to investigate the influence of nest box aspect on nest box temperature. Squirrel gliders (Petaurus norfolcensis) occupied boxes at both locations. I recorded temperatures over a 1-month period in two summers. Temperature varied by up to 20°C within a 24-h period and some nest boxes experienced temperatures above 40°C. There was no significant difference in maximum temperature with nest box aspect but south-east boxes could be 1°C cooler during hot weather. Nest box construction material, colour (brown or green) and volume (0.008 m3 or 0.025 m3) had variable influences on temperature. Nest box installations for non-flying mammals should place nest boxes to minimise extreme temperatures. Further studies are required to determine whether temperature limits the effectiveness of nest boxes at some locations.

A review of home-range studies on Australian terrestrial vertebrates: adequacy of studies, testing of hypotheses, and relevance to conservation and international studies

Describing the spatial requirements of animals is central to understanding their ecology and conservation needs. I reviewed 115 studies describing the home ranges of Australian terrestrial vertebrates that were published during 2001–12. Understanding the features that characterise best practice can guide future studies. I aimed to: evaluate the adequacy of these studies, examine the use of current analysis techniques, examine the application of home-range knowledge to species’ management, and examine hypotheses that seek to explain the size and location of home ranges. The reviewed studies were unevenly distributed across taxa with a majority (68%) involving mammals compared with birds (12%), reptiles (19%) and frogs (1%). Many studies had various shortcomings, suggesting that they had not fully described home ranges; many (41%) involved 10 or fewer individuals, ≤50 locations per individual (44%), and spanned periods of ≤3 months (46%). Studies of short duration risk underestimating home-range area and overlooking seasonal habitat use. Global positioning system telemetry was used in 10% of Australian studies. Many were also of short duration. Despite frequent criticism in the literature, the Minimum Convex Polygon was the most frequently used home-range estimator (84% of studies), followed by the Fixed Kernel (45% of studies). Applying knowledge of home ranges appears to be underappreciated, with only 39% of studies explicitly aiming to address management or conservation issues. Only three studies tested hypotheses that may explain home-range characteristics. Resource (food and shelter) distribution and, in one case, its heterogeneity, shaped home-range characteristics. I found that most studies use the term ‘home range’ in an indiscriminate way. Only 11% of studies within the international literature used qualifying terms (e.g. seasonal, annual). Tracking period is shown to influence home-range estimates. Therefore, I recommend that qualifying terms be used more frequently to avoid confusion when referring to animal home ranges.

Simplification of arboreal marsupial assemblages in response to increasing urbanization

Arboreal marsupials play an essential role in ecosystem function including regulating insect and plant populations, facilitating pollen and seed dispersal and acting as a prey source for higher-order carnivores in Australian environments. Primarily, research has focused on their biology, ecology and response to disturbance in forested and urban environments. We used presence-only species distribution modelling to understand the relationship between occurrences of arboreal marsupials and eco-geographical variables, and to infer habitat suitability across an urban gradient. We used post-proportional analysis to determine whether increasing urbanization affected potential habitat for arboreal marsupials. The key eco-geographical variables that influenced disturbance intolerant species and those with moderate tolerance to disturbance were natural features such as tree cover and proximity to rivers and to riparian vegetation, whereas variables for disturbance tolerant species were anthropogenic-based (e.g., road density) but also included some natural characteristics such as proximity to riparian vegetation, elevation and tree cover. Arboreal marsupial diversity was subject to substantial change along the gradient, with potential habitat for disturbance-tolerant marsupials distributed across the complete gradient and potential habitat for less tolerant species being restricted to the natural portion of the gradient. This resulted in highly-urbanized environments being inhabited by a few generalist arboreal marsupial species. Increasing urbanization therefore leads to functional simplification of arboreal marsupial assemblages, thus impacting on the ecosystem services they provide.

Interaction between distant taxa in the use of tree cavities in African ecosystems: a study using nest-boxes

Convergence in the use of resources may occur between distantly related organisms. A major ecological resource in which members of various taxa may be interested is a cavity for nesting. A variety of social hymenopterans and vertebrates may nest within tree cavities in tropical ecosystems. We used 241 nest-boxes placed in seven Kenyan localities to investigate the use of nesting cavities by members of distant taxa and discuss whether interaction between them is a potential factor shaping cavity-nester communities in tropical regions. The nest-boxes were occupied by social insects (ants, bees and wasps) (30.1% of nest-boxes in April–May and 33.1% in September–October) and vertebrates (birds and mammals) (20% and 7.7%, respectively). Hymenopterans were more abundant in forest boxes (36.2% of nest-boxes occupied in April–May and 37% in September–October), whereas savannas had lower figures (21.7% and 31.3%, respectively). Among vertebrates, most occupants of nest-boxes in savanna were birds (17.8% of nest-boxes occupied vs. 8% in mammals), while mammals predominated in forests (4.9% of the nest-boxes occupied vs. 0.3% in birds). Spatial and temporal patterns of occupation highlight the potential that interaction between distant taxa may have on the access to nesting cavities. More nest-boxes remained unoccupied in forested areas than in savanna areas suggesting that a shorter supply of nesting sites in the savanna may be a source of competition. The simultaneous occupation of a nest-box by two different taxa was exceptional, also supporting the hypothesized inter-taxon competition.

Distribution, habitat preferences and management of the yellow-bellied glider, Petaurus australis, on the Bago Plateau, New South Wales: a reassessment of the population and its status

Context A population of yellow-bellied glider on the Bago Plateau, near Tumbarumba, was listed as an Endangered Population in 2008 under the New South Wales (NSW) Threatened Species Conservation Act 1995. The listing was based on limited data that suggested that the population is geographically and genetically distinct and its habitat in decline. Aims To review the validity of the endangered-population listing following the collection of new data on its distribution, habitat preferences and responses to logging. Methods Surveys for the yellow-bellied glider were conducted at a subset of sites established in 1995 on the Bago Plateau as well as across parts of the neighbouring Kosciuszko National Park, which had not been surveyed previously. The distribution of suitable habitat throughout these areas was evaluated. Key results The yellow-bellied glider was recorded at 29% of 48 sites resurveyed in 2010, 54% of which were previously occupied in 1995. Most changes in glider occupancy occurred at sites that had not been logged during the intervening period. The gliders preferred forest types dominated by montane gums (Eucalyptus dalrympleana, E. viminalis, E. camphora, E. pauciflora and E. stellulata) and used forest types of montane gums mixed with E. robertsonii or E. delegatensis in proportion to their availability across the landscape. The gliders were not observed to use monospecific stands of E. delegatensis. The yellow-bellied glider was also recorded frequently in Kosciuszko National Park. E. dalrympleana was consistently represented in the distribution of this species across the NSW Snowy Mountains. Conclusions Yellow-bellied glider site occupancy was not related to timber harvesting. Its habitat was not restricted by elevation or confined within Bago and Maragle State Forests by the Tumut River Gorge, Blowering and Talbingo Dams, as previously thought. We estimated that there is a large population of the gliders occupying up to 440 000 ha of contiguous habitat across the broader Snowy Mountains region of NSW, extending also into ACT and Victoria. Implications The listing of the Bago Plateau portion of this population as an endangered population appears inconsistent with relevant listing criteria and requires review.

Does nest box design influence use by the eastern pygmy-possum?

Managing the availability of shelter sites is central to the conservation of vertebrate wildlife dependent on tree hollows (cavities) because hollow abundance has been reduced in many landscapes and trees do not typically acquire hollows until they are at least 100 years old. Artificial hollows (nest boxes) provide one option to offset local shortages in tree hollows. However, knowledge of preferred designs is required for this to be effective. We investigated nest box preference by the eastern pygmy-possum (Cercartetus nanus), a small marsupial recognised as threatened across part of its geographic range in eastern Australia. We installed nest boxes of four different designs in each of 30 plots where tree hollows were scarce. Designs showed no significant difference in thermal profile. We captured 223 adult and subadult pygmy-possums within 78% of the 120 boxes. Breeding females used boxes more frequently than adult males and showed a preference among the designs whereas males did not. Females favoured plywood nest boxes over a PVC design offering a horizontal cavity. Use of the PVC design increased when repositioned to present a vertical cavity. Thus, breeding females are selective of the cavities used to rear young, which may limit local population size.