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For: Poulsen JA, Nyman G, Rossky PJ. Static and dynamic quantum effects in molecular liquids: a linearized path integral description of water. Proc Natl Acad Sci U S A 2005;102:6709-14. [PMID: 15860585 PMCID: PMC1100757 DOI: 10.1073/pnas.0408647102] [Citation(s) in RCA: 84] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
Number Cited by Other Article(s)
1
Malpathak S, Ananth N. A Linearized Semiclassical Dynamics Study of the Multiquantum Vibrational Relaxation of NO Scattering from a Au(111) Surface. J Phys Chem Lett 2024;15:794-801. [PMID: 38232133 DOI: 10.1021/acs.jpclett.3c03041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2024]
2
Malpathak S, Ananth N. Non-linear correlation functions and zero-point energy flow in mixed quantum-classical semiclassical dynamics. J Chem Phys 2023;158:104106. [PMID: 36922136 DOI: 10.1063/5.0133222] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2023]  Open
3
Shiga M. Path integral Brownian chain molecular dynamics: A simple approximation of quantum vibrational dynamics. J Comput Chem 2022;43:1864-1879. [PMID: 36094104 DOI: 10.1002/jcc.26989] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2022] [Revised: 08/06/2022] [Accepted: 08/09/2022] [Indexed: 11/05/2022]
4
Malpathak S, Church MS, Ananth N. A Semiclassical Framework for Mixed Quantum Classical Dynamics. J Phys Chem A 2022;126:6359-6375. [PMID: 36070472 DOI: 10.1021/acs.jpca.2c03467] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
5
Poulsen JA, Nyman G. A Divergence-Free Wigner Transform of the Boltzmann Operator Based on an Effective Frequency Theory. J Phys Chem A 2021;125:9209-9225. [PMID: 34636560 PMCID: PMC8543443 DOI: 10.1021/acs.jpca.1c05860] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
6
Dubey V, Dueby S, Daschakraborty S. Breakdown of the Stokes-Einstein relation in supercooled water: the jump-diffusion perspective. Phys Chem Chem Phys 2021;23:19964-19986. [PMID: 34515269 DOI: 10.1039/d1cp02202d] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
7
Zheng D, Yuan Y, Wang F. Determining the hydration free energies of selected small molecules with MP2 and local MP2 through adaptive force matching. J Chem Phys 2021;154:104113. [PMID: 33722038 DOI: 10.1063/5.0044712] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
8
Pieroni C, Marsili E, Lauvergnat D, Agostini F. Relaxation dynamics through a conical intersection: Quantum and quantum-classical studies. J Chem Phys 2021;154:034104. [PMID: 33499611 DOI: 10.1063/5.0036726] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]  Open
9
Frank I. Classical Motion of the Nuclei in a Molecule: A Concept Without Alternatives. ChemistrySelect 2020. [DOI: 10.1002/slct.202000066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
10
Plé T, Huppert S, Finocchi F, Depondt P, Bonella S. Sampling the thermal Wigner density via a generalized Langevin dynamics. J Chem Phys 2019;151:114114. [PMID: 31542021 DOI: 10.1063/1.5099246] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
11
Mangaud E, Huppert S, Plé T, Depondt P, Bonella S, Finocchi F. The Fluctuation–Dissipation Theorem as a Diagnosis and Cure for Zero-Point Energy Leakage in Quantum Thermal Bath Simulations. J Chem Theory Comput 2019;15:2863-2880. [DOI: 10.1021/acs.jctc.8b01164] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
12
Liu X, Liu J. Critical role of quantum dynamical effects in the Raman spectroscopy of liquid water. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1434907] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
13
Marsalek O, Markland TE. Quantum Dynamics and Spectroscopy of Ab Initio Liquid Water: The Interplay of Nuclear and Electronic Quantum Effects. J Phys Chem Lett 2017;8:1545-1551. [PMID: 28296422 DOI: 10.1021/acs.jpclett.7b00391] [Citation(s) in RCA: 137] [Impact Index Per Article: 19.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
14
Montoya-Castillo A, Reichman DR. Approximate but accurate quantum dynamics from the Mori formalism. II. Equilibrium time correlation functions. J Chem Phys 2017;146:084110. [DOI: 10.1063/1.4975388] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
15
Montoya-Castillo A, Reichman DR. Path integral approach to the Wigner representation of canonical density operators for discrete systems coupled to harmonic baths. J Chem Phys 2017;146:024107. [DOI: 10.1063/1.4973646] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
16
Lee MK, Huo P, Coker DF. Semiclassical Path Integral Dynamics: Photosynthetic Energy Transfer with Realistic Environment Interactions. Annu Rev Phys Chem 2016;67:639-68. [DOI: 10.1146/annurev-physchem-040215-112252] [Citation(s) in RCA: 96] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
17
Montoya-Castillo A, Reichman DR. Approximate but accurate quantum dynamics from the Mori formalism: I. Nonequilibrium dynamics. J Chem Phys 2016;144:184104. [DOI: 10.1063/1.4948408] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
18
Liu J, Zhang Z. Path integral Liouville dynamics: Applications to infrared spectra of OH, water, ammonia, and methane. J Chem Phys 2016;144:034307. [DOI: 10.1063/1.4939953] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
19
Beutier J, Vuilleumier R, Bonella S, Ciccotti G. Gas phase infrared spectra from quasi-classical Kubo time correlation functions. Mol Phys 2015. [DOI: 10.1080/00268976.2015.1064550] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
20
Liu J. Path integral Liouville dynamics for thermal equilibrium systems. J Chem Phys 2015;140:224107. [PMID: 24929374 DOI: 10.1063/1.4881518] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
21
Spura T, John C, Habershon S, Kühne TD. Nuclear quantum effects in liquid water from path-integral simulations using anab initioforce-matching approach. Mol Phys 2014. [DOI: 10.1080/00268976.2014.981231] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
22
Beutier J, Borgis D, Vuilleumier R, Bonella S. Computing thermal Wigner densities with the phase integration method. J Chem Phys 2014;141:084102. [DOI: 10.1063/1.4892597] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]  Open
23
Ando K. Initial value represented propagator for semiquantal squeezed state wave packet. Chem Phys Lett 2014. [DOI: 10.1016/j.cplett.2013.11.032] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
24
Approximating Time-Dependent Quantum Statistical Properties. ENTROPY 2013. [DOI: 10.3390/e16010086] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
25
Habershon S, Manolopoulos DE, Markland TE, Miller TF. Ring-Polymer Molecular Dynamics: Quantum Effects in Chemical Dynamics from Classical Trajectories in an Extended Phase Space. Annu Rev Phys Chem 2013;64:387-413. [DOI: 10.1146/annurev-physchem-040412-110122] [Citation(s) in RCA: 448] [Impact Index Per Article: 40.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
26
Lin K, Hu N, Zhou X, Liu S, Luo Y. Quantum Effects on Global Structure of Liquid Water. CHINESE J CHEM PHYS 2013. [DOI: 10.1063/1674-0068/26/02/127-132] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
27
Monteferrante M, Bonella S, Ciccotti G. Quantum dynamical structure factor of liquid neon via a quasiclassical symmetrized method. J Chem Phys 2013;138:054118. [DOI: 10.1063/1.4789760] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
28
Basire M, Borgis D, Vuilleumier R. Computing Wigner distributions and time correlation functions using the quantum thermal bath method: application to proton transfer spectroscopy. Phys Chem Chem Phys 2013;15:12591-601. [DOI: 10.1039/c3cp50493j] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
29
Khaliullin RZ, Kühne TD. Microscopic properties of liquid water from combined ab initio molecular dynamics and energy decomposition studies. Phys Chem Chem Phys 2013;15:15746-66. [DOI: 10.1039/c3cp51039e] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
30
Pinnick ER, Erramilli S, Wang F. Predicting the melting temperature of ice-Ih with only electronic structure information as input. J Chem Phys 2012;137:014510. [PMID: 22779668 DOI: 10.1063/1.4731693] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]  Open
31
Liu J, Miller WH, Fanourgakis GS, Xantheas SS, Imoto S, Saito S. Insights in quantum dynamical effects in the infrared spectroscopy of liquid water from a semiclassical study with an ab initio-based flexible and polarizable force field. J Chem Phys 2012;135:244503. [PMID: 22225165 DOI: 10.1063/1.3670960] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
32
Huo P, Coker DF. Influence of environment induced correlated fluctuations in electronic coupling on coherent excitation energy transfer dynamics in model photosynthetic systems. J Chem Phys 2012;136:115102. [DOI: 10.1063/1.3693019] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
33
Monteferrante M, Bonella S, Ciccotti G. Linearized symmetrized quantum time correlation functions calculation via phase pre-averaging. Mol Phys 2011. [DOI: 10.1080/00268976.2011.619506] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
34
Liu J, Alder BJ, Miller WH. A semiclassical study of the thermal conductivity of low temperature liquids. J Chem Phys 2011;135:114105. [DOI: 10.1063/1.3639107] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
35
Paesani F. Hydrogen bond dynamics in heavy water studied with quantum dynamical simulations. Phys Chem Chem Phys 2011;13:19865-75. [PMID: 21892511 DOI: 10.1039/c1cp21863h] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
36
Liu J. Two more approaches for generating trajectory-based dynamics which conserves the canonical distribution in the phase space formulation of quantum mechanics. J Chem Phys 2011;134:194110. [DOI: 10.1063/1.3589406] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
37
Liu J, Miller WH. An approach for generating trajectory-based dynamics which conserves the canonical distribution in the phase space formulation of quantum mechanics. II. Thermal correlation functions. J Chem Phys 2011;134:104102. [DOI: 10.1063/1.3555274] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
38
Andersson S, Arasa C, Yabushita A, Yokoyama M, Hama T, Kawasaki M, Western CM, Ashfold MNR. A theoretical and experimental study on translational and internal energies of H2O and OH from the 157 nm irradiation of amorphous solid water at 90 K. Phys Chem Chem Phys 2011;13:15810-20. [DOI: 10.1039/c1cp21138b] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
39
Czakó G, Kaledin AL, Bowman JM. Zero-point energy constrained quasiclassical, classical, and exact quantum simulations of isomerizations and radial distribution functions of the water trimer using an ab initio potential energy surface. Chem Phys Lett 2010. [DOI: 10.1016/j.cplett.2010.10.015] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
40
Bonella S, Monteferrante M, Pierleoni C, Ciccotti G. Path integral based calculations of symmetrized time correlation functions. II. J Chem Phys 2010;133:164105. [DOI: 10.1063/1.3493449] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
41
Shaik MS, Liem SY, Popelier PLA. Properties of liquid water from a systematic refinement of a high-rank multipolar electrostatic potential. J Chem Phys 2010;132:174504. [PMID: 20459171 DOI: 10.1063/1.3409563] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]  Open
42
Arasa C, Andersson S, Cuppen HM, van Dishoeck EF, Kroes GJ. Molecular dynamics simulations of the ice temperature dependence of water ice photodesorption. J Chem Phys 2010. [DOI: 10.1063/1.3422213] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
43
Linearized approximations for condensed phase non-adiabatic dynamics: Multi-layered baths and Brownian dynamics implementation. Chem Phys 2010. [DOI: 10.1016/j.chemphys.2010.02.021] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
44
Czakó G, Kaledin AL, Bowman JM. A practical method to avoid zero-point leak in molecular dynamics calculations: Application to the water dimer. J Chem Phys 2010;132:164103. [DOI: 10.1063/1.3417999] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
45
Hyeon-Deuk K, Ando K. Quantum effects of hydrogen atoms on the dynamical rearrangement of hydrogen-bond networks in liquid water. J Chem Phys 2010;132:164507. [DOI: 10.1063/1.3397809] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
46
Ivanov SD, Witt A, Shiga M, Marx D. Communications: On artificial frequency shifts in infrared spectra obtained from centroid molecular dynamics: Quantum liquid water. J Chem Phys 2010;132:031101. [DOI: 10.1063/1.3290958] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
47
Bonella S, Ciccotti G, Kapral R. Linearization approximations and Liouville quantum–classical dynamics. Chem Phys Lett 2010. [DOI: 10.1016/j.cplett.2009.11.056] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
48
Habershon S, Manolopoulos DE. Zero point energy leakage in condensed phase dynamics: An assessment of quantum simulation methods for liquid water. J Chem Phys 2009;131:244518. [DOI: 10.1063/1.3276109] [Citation(s) in RCA: 108] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
49
Liu J, Miller WH, Paesani F, Zhang W, Case DA. Quantum dynamical effects in liquid water: A semiclassical study on the diffusion and the infrared absorption spectrum. J Chem Phys 2009;131:164509. [PMID: 19894958 DOI: 10.1063/1.3254372] [Citation(s) in RCA: 71] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
50
Sun X, Yoo S, Xantheas SS, Dang LX. The reorientation mechanism of hydroxide ions in water: A molecular dynamics study. Chem Phys Lett 2009. [DOI: 10.1016/j.cplett.2009.09.004] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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