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Dogan OB, Flach MG, Miller MF, Brashears MM. Understanding potential cattle contribution to leafy green outbreaks: A scoping review of the literature and public health reports. Compr Rev Food Sci Food Saf 2023; 22:3506-3530. [PMID: 37421315 DOI: 10.1111/1541-4337.13200] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2022] [Revised: 05/12/2023] [Accepted: 06/04/2023] [Indexed: 07/10/2023]
Abstract
Recently, multiple reports from regulatory agencies have linked leafy green outbreaks to nearby or adjacent cattle operations. While they have made logical explanations for this phenomenon, the reports and data should be summarized to determine if the association was based on empirical data, epidemiological association, or speculation. Therefore, this scoping review aims to gather data on the mechanisms of transmission for pathogens from livestock to produce, identify if direct evidence linking the two entities exists, and identify any knowledge gaps in the scientific literature and public health reports. Eight databases were searched systematically and 27 eligible primary research products, which focus on produce safety concerning proximity to livestock, provided empirical or epidemiological association and described mechanisms of transmission, qualitatively or quantitatively were retained. Fifteen public health reports were also covered. Results from the scientific articles provided evidence that proximity to livestock might be a risk factor; however, most lack quantitative data on the relative contribution of different pathways for contamination. Public health reports mainly indicate livestock presence as a possible source and encourage further research. Although the collected information regarding the proximity of cattle is a concern, data gaps indicate that more studies should be conducted to determine the relative contribution of different mechanisms of contamination and generate quantitative data to inform food safety risk analyses, regarding leafy greens produced nearby livestock areas.
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Affiliation(s)
- Onay B Dogan
- International Center for Food Industry Excellence, Department of Animal and Food Sciences, Texas Tech University, Lubbock, Texas, USA
| | - Makenzie G Flach
- International Center for Food Industry Excellence, Department of Animal and Food Sciences, Texas Tech University, Lubbock, Texas, USA
| | - Markus F Miller
- International Center for Food Industry Excellence, Department of Animal and Food Sciences, Texas Tech University, Lubbock, Texas, USA
| | - Mindy M Brashears
- International Center for Food Industry Excellence, Department of Animal and Food Sciences, Texas Tech University, Lubbock, Texas, USA
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2
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Younes N, Yassine HM, Kourentzi K, Tang P, Litvinov D, Willson RC, Abu-Raddad LJ, Nasrallah GK. A review of rapid food safety testing: using lateral flow assay platform to detect foodborne pathogens. Crit Rev Food Sci Nutr 2023; 64:9910-9932. [PMID: 37350754 DOI: 10.1080/10408398.2023.2217921] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/24/2023]
Abstract
The detrimental impact of foodborne pathogens on human health makes food safety a major concern at all levels of production. Conventional methods to detect foodborne pathogens, such as live culture, high-performance liquid chromatography, and molecular techniques, are relatively tedious, time-consuming, laborious, and expensive, which hinders their use for on-site applications. Recurrent outbreaks of foodborne illness have heightened the demand for rapid and simple technologies for detection of foodborne pathogens. Recently, Lateral flow assays (LFA) have drawn attention because of their ability to detect pathogens rapidly, cheaply, and on-site. Here, we reviewed the latest developments in LFAs to detect various foodborne pathogens in food samples, giving special attention to how reporters and labels have improved LFA performance. We also discussed different approaches to improve LFA sensitivity and specificity. Most importantly, due to the lack of studies on LFAs for the detection of viral foodborne pathogens in food samples, we summarized our recent research on developing LFAs for the detection of viral foodborne pathogens. Finally, we highlighted the main challenges for further development of LFA platforms. In summary, with continuing improvements, LFAs may soon offer excellent performance at point-of-care that is competitive with laboratory techniques while retaining a rapid format.
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Affiliation(s)
- Nadin Younes
- Biomedical Research Center, Qatar University, Doha, Qatar
- Department of Biomedical Science, College of Health Sciences, QU Health, Qatar University, Doha, Qatar
| | - Hadi M Yassine
- Biomedical Research Center, Qatar University, Doha, Qatar
- Department of Biomedical Science, College of Health Sciences, QU Health, Qatar University, Doha, Qatar
| | - Katerina Kourentzi
- William A. Brookshire Department of Chemical and Biomolecular Engineering, University of Houston, Houston, Texas, USA
| | - Patrick Tang
- Department of Pathology, Sidra Medicine, Doha, Qatar
| | - Dmitri Litvinov
- William A. Brookshire Department of Chemical and Biomolecular Engineering, University of Houston, Houston, Texas, USA
- Center for Integrated Bio & Nano Systems, University of Houston, Houston, Texas, USA
| | - Richard C Willson
- William A. Brookshire Department of Chemical and Biomolecular Engineering, University of Houston, Houston, Texas, USA
- Department of Biology and Biochemistry, University of Houston, Houston, Texas, USA
| | - Laith J Abu-Raddad
- Infectious Disease Epidemiology Group, Weill Cornell Medicine-Qatar, Cornell University, Doha, Qatar
- World Health Organization Collaborating Centre for Disease Epidemiology Analytics on HIV/AIDS, Sexually Transmitted Infections, and Viral Hepatitis, Weill Cornell Medicine-Qatar, Cornell University, Doha, Qatar
- Department of Healthcare Policy and Research, Weill Cornell Medicine, Cornell University, New York, New York, USA
| | - Gheyath K Nasrallah
- Biomedical Research Center, Qatar University, Doha, Qatar
- Department of Biomedical Science, College of Health Sciences, QU Health, Qatar University, Doha, Qatar
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Pires AFA, Ramos TDM, Baron JN, Millner PD, Pagliari PH, Hutchinson M, Haghani V, Aminabadi P, Kenney A, Hashem F, Martínez-López B, Bihn EA, Clements DP, Shade JB, Sciligo AR, Jay-Russell MT. Risk factors associated with the prevalence of Shiga-toxin-producing Escherichia coli in manured soils on certified organic farms in four regions of the USA. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2023. [DOI: 10.3389/fsufs.2023.1125996] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/28/2023] Open
Abstract
IntroductionBiological soil amendments of animal origin (BSAAO), including untreated amendments are often used to improve soil fertility and are particularly important in organic agriculture. However, application of untreated manure on cropland can potentially introduce foodborne pathogens into the soil and onto produce. Certified organic farms follow the USDA National Organic Program (NOP) standards that stipulate a 90- or 120-day interval between application of untreated manure and crop harvest, depending on whether the edible portion of the crop directly contacts the soil. This time-interval metric is based on environmental factors and does not consider a multitude of factors that might affect the survival of the main pathogens of concern. The objective of this study was to assess predictors for the prevalence of Shiga-toxin-producing Escherichia coli (non-O157 STEC) in soils amended with untreated manure on USDA-NOP certified farms.MethodsA longitudinal, multi-regional study was conducted on 19 farms in four USA regions for two growing seasons (2017–2018). Untreated manure (cattle, horse, and poultry), soil, and irrigation water samples were collected and enrichment cultured for non-O157 STEC. Mixed effects logistic regression models were used to analyze the predictors of non-O157 STEC in the soil up to 180 days post-manure application.Results and discussionResults show that farm management practices (previous use with livestock, presence of animal feces on the field, season of manure application) and soil characteristics (presence of generic E. coli in the soil, soil moisture, sodium) increased the odds of STEC-positive soil samples. Manure application method and snowfall decreased the odds of detecting STEC in the soil. Time-variant predictors (year and sampling day) affected the presence of STEC. This study shows that a single metric, such as the time interval between application of untreated manure and crop harvest, may not be sufficient to reduce the food safety risks from untreated manure, and additional environmental and farm-management practices should also be considered. These findings are of particular importance because they provide multi-regional baseline data relating to current NOP wait-time standards. They can therefore contribute to the development of strategies to reduce pathogen persistence that may contribute to contamination of fresh produce typically eaten raw from NOP-certified farms using untreated manure.
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Wind Speed and Landscape Context Mediate Campylobacter Risk among Poultry Reared in Open Environments. Animals (Basel) 2023; 13:ani13030492. [PMID: 36766380 PMCID: PMC9913591 DOI: 10.3390/ani13030492] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Revised: 01/23/2023] [Accepted: 01/26/2023] [Indexed: 02/04/2023] Open
Abstract
Foodborne pathogens cause over 9 million illnesses in the United States each year, and Campylobacter from chickens is the largest contributor. Rearing poultry outdoors without the use of antibiotics is becoming an increasingly popular style of farming; however, little is understood about how environmental factors and farm management alter pathogen prevalence. Our survey of 27 farms in California, Oregon, Washington, and Idaho, USA, revealed a diversity of management practices used to rear poultry in the open environment. Here, we assess environmental and management factors that impact Campylobacter spp. prevalence in 962 individual chicken fecal samples from 62 flocks over a three-year period. We detected Campylobacter spp. in 250/962 (26.0%) of fecal samples screened, in 69.4% (43/62) of flocks, and on 85.2% (23/27) of farms. We found that Campylobacter spp. prevalence was predicted to increase in poultry on farms with higher average wind speeds in the seven days preceding sampling; on farms embedded in more agricultural landscapes; and in flocks typified by younger birds, more rotations, higher flock densities, and the production of broilers. Collectively, our results suggest that farms in areas with higher wind speeds and more surrounding agriculture face greater risk of Campylobacter spp. introduction into their flocks.
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Thompson JB, Symonds J, Carlisle L, Iles A, Karp DS, Ory J, Bowles TM. Remote sensing of hedgerows, windbreaks, and winter cover crops in California's Central Coast reveals low adoption but hotspots of use. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2023. [DOI: 10.3389/fsufs.2023.1052029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023] Open
Abstract
Non-crop vegetation, such as hedgerows and cover crops, are important on-farm diversification practices that support biodiversity and ecosystem services; however, information about their rates and patterns of adoption are scarce. We used satellite and aerial imagery coupled with machine learning classification to map the use of hedgerows/windbreaks and winter cover crops in California's Central Coast, a globally important agricultural area of intensive fresh produce production. We expected that adoption of both practices would be relatively low and unevenly distributed across the landscape, with higher levels of adoption found in marginal farmland and in less intensively cultivated areas where the pressure to remove non-crop vegetation may be lower. Our remote sensing classification revealed that only ~6% of farmland had winter cover crops in 2021 and 0.26% of farmland had hedgerows or windbreaks in 2018. Thirty-seven percent of ranch parcels had cover crops on at least 5% of the ranch while 22% of ranches had at least one hedgerow/windbreak. Nearly 16% of farmland had other annual winter crops, some of which could provide services similar to cover crops; however, 60% of farmland had bare soil over the winter study period, with the remainder of farmland classified as perennial crops or strawberries. Hotspot analysis showed significant areas of adoption of both practices in the hillier regions of all counties. Finally, qualitative interviews revealed that adoption patterns were likely driven by interrelated effects of topography, land values, and farming models, with organic, diversified farms implementing these practices in less ideal, lower-value farmland. This study demonstrates how remote sensing coupled with qualitative research can be used to map and interpret patterns of important diversification practices, with implications for tracking policy interventions and targeting resources to assist farmers motivated to expand adoption.
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Weller DL, Love TMT, Weller DE, Murphy CM, Rahm BG, Wiedmann M. Structural Equation Models Suggest That On-Farm Noncrop Vegetation Removal Is Not Associated with Improved Food Safety Outcomes but Is Linked to Impaired Water Quality. Appl Environ Microbiol 2022; 88:e0160022. [PMID: 36409131 PMCID: PMC9746293 DOI: 10.1128/aem.01600-22] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Accepted: 10/03/2022] [Indexed: 11/23/2022] Open
Abstract
While growers have reported pressures to minimize wildlife intrusion into produce fields through noncrop vegetation (NCV) removal, NCV provides key ecosystem services. To model food safety and environmental tradeoffs associated with NCV removal, published and publicly available food safety and water quality data from the Northeastern United States were obtained. Because data on NCV removal are not widely available, forest-wetland cover was used as a proxy, consistent with previous studies. Structural equation models (SEMs) were used to quantify the effect of forest-wetland cover on (i) food safety outcomes (e.g., detecting pathogens in soil) and (ii) water quality (e.g., nutrient levels). Based on the SEMs, NCV was not associated with or had a protective effect on food safety outcomes (more NCV was associated with a reduced likelihood of pathogen detection). The probabilities of detecting Listeria spp. in soil (effect estimate [EE] = -0.17; P = 0.005) and enterohemorrhagic Escherichia coli in stream samples (EE = -0.27; P < 0.001) were negatively associated with the amount of NCV surrounding the sampling site. Larger amounts of NCV were also associated with lower nutrient, salinity, and sediment levels, and higher dissolved oxygen levels. Total phosphorous levels were negatively associated with the amount of NCV in the upstream watershed (EE = -0.27; P < 0.001). Similar negative associations (P < 0.05) were observed for other physicochemical parameters, such as nitrate (EE = -0.38). Our findings suggest that NCV should not be considered an inherent produce safety risk or result in farm audit demerits. This study also provides a framework for evaluating environmental tradeoffs associated with using specific preharvest food safety strategies. IMPORTANCE Currently, on-farm food safety decisions are typically made independently of conservation considerations, often with detrimental impacts on agroecosystems. Comanaging agricultural environments to simultaneously meet conservation and food safety aims is complicated because farms are closely linked to surrounding environments, and management decisions can have unexpected environmental, economic, and food safety consequences. Thus, there is a need for research on the conservation and food safety tradeoffs associated with implementing specific preharvest food safety practices. Understanding these tradeoffs is critical for developing adaptive comanagement strategies and ensuring the short- and long-term safety, sustainability, and profitability of agricultural systems. This study quantifies tradeoffs and synergies between food safety and environmental aims, and outlines a framework for modeling tradeoffs and synergies between management aims that can be used to support future comanagement research.
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Affiliation(s)
- Daniel L. Weller
- Department of Food Science, Cornell University, Ithaca, New York, USA
- Department of Biostatistics and Computational Biology, University of Rochester Medical Center, Rochester, New York, USA
| | - Tanzy M. T. Love
- Department of Biostatistics and Computational Biology, University of Rochester Medical Center, Rochester, New York, USA
| | - Donald E. Weller
- Department of Biostatistics and Computational Biology, University of Rochester Medical Center, Rochester, New York, USA
| | - Claire M. Murphy
- Smithsonian Environmental Research Center, Edgewater, Maryland, USA
| | - Brian G. Rahm
- Virginia Polytechnic and State University, Blacksburg, Virginia, USA
| | - Martin Wiedmann
- Department of Food Science, Cornell University, Ithaca, New York, USA
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Brennan FP, Alsanius BW, Allende A, Burgess CM, Moreira H, Johannessen GS, Castro PML, Uyttendaele M, Truchado P, Holden NJ. Harnessing agricultural microbiomes for human pathogen control. ISME COMMUNICATIONS 2022; 2:44. [PMID: 37938739 PMCID: PMC9723689 DOI: 10.1038/s43705-022-00127-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2022] [Revised: 04/08/2022] [Accepted: 04/12/2022] [Indexed: 08/24/2023]
Affiliation(s)
- Fiona P Brennan
- Teagasc, Department of Environment, Soils and Landuse, Johnstown Castle, Wexford, Ireland.
| | - Beatrix W Alsanius
- Department of Biosystems and Technology; Microbial Horticulture Unit, Swedish University of Agricultural Sciences, Alnarp, Sweden
| | - Ana Allende
- Food Safety and Quality Group, CEBAS-CSIC, Campus Universitario de Espinardo, Murcia, Spain
| | - Catherine M Burgess
- Food Safety Department, Teagasc Food Research Centre, Ashtown, Dublin, Ireland
| | - Helena Moreira
- Universidade Católica Portuguesa, CBQF-Centro de Biotecnologia e Química Fina-Laboratório Associado, Escola Superior de Biotecnologia, Porto, Portugal
| | - Gro S Johannessen
- Section for Food Safety and Animal Health Research, Norwegian Veterinary Institute, Oslo, Norway
| | - Paula M L Castro
- Universidade Católica Portuguesa, CBQF-Centro de Biotecnologia e Química Fina-Laboratório Associado, Escola Superior de Biotecnologia, Porto, Portugal
| | - Mieke Uyttendaele
- Department of Food Technology, Food Safety and Health, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, Ghent, Belgium
| | - Pilar Truchado
- Food Safety and Quality Group, CEBAS-CSIC, Campus Universitario de Espinardo, Murcia, Spain
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Fessia A, Barra P, Barros G, Nesci A. Could Bacillus biofilms enhance the effectivity of biocontrol strategies in the phyllosphere? J Appl Microbiol 2022; 133:2148-2166. [PMID: 35476896 DOI: 10.1111/jam.15596] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Revised: 04/13/2022] [Accepted: 04/21/2022] [Indexed: 11/30/2022]
Abstract
Maize (Zea mays L.), a major crop in Argentina and a staple food around the world, is affected by the emergence and re-emergence of foliar diseases. Agrochemicals are the main control strategy nowadays, but they can cause resistance in insects and microbial pathogens and have negative effects on the environment and human health. An emerging alternative is the use of living organisms, i.e. microbial biocontrol agents, to suppress plant pathogen populations. This is a risk-free approach when the organisms acting as biocontrol agents come from the same ecosystem as the foliar pathogens they are meant to antagonize. Some epiphytic microorganisms may form biofilm by becoming aggregated and attached to a surface, as is the case of spore-forming bacteria from the genus Bacillus. Their ability to sporulate and their tolerance to long storage periods make them a frequently used biocontrol agent. Moreover, the biofilm that they create protects them against different abiotic and biotic factors and helps them to acquire nutrients, which ensures their survival on the plants they protect. This review analyzes the interactions that the phyllosphere-inhabiting Bacillus genus establishes with its environment through biofilm, and how this lifestyle could serve to design effective biological control strategies.
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Affiliation(s)
- Aluminé Fessia
- Laboratorio de Ecología Microbiana, Departamento de Microbiología e Inmunología, Facultad de Ciencias Exactas, Físico-Químicas y Naturales, Universidad Nacional de Río Cuarto, Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Ruta Nacional 36, Km 601, X5804ZAB Río Cuarto, Córdoba, Argentina
| | - Paula Barra
- Laboratorio de Ecología Microbiana, Departamento de Microbiología e Inmunología, Facultad de Ciencias Exactas, Físico-Químicas y Naturales, Universidad Nacional de Río Cuarto, Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Ruta Nacional 36, Km 601, X5804ZAB Río Cuarto, Córdoba, Argentina
| | - Germán Barros
- Laboratorio de Ecología Microbiana, Departamento de Microbiología e Inmunología, Facultad de Ciencias Exactas, Físico-Químicas y Naturales, Universidad Nacional de Río Cuarto, Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Ruta Nacional 36, Km 601, X5804ZAB Río Cuarto, Córdoba, Argentina
| | - Andrea Nesci
- Laboratorio de Ecología Microbiana, Departamento de Microbiología e Inmunología, Facultad de Ciencias Exactas, Físico-Químicas y Naturales, Universidad Nacional de Río Cuarto, Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Ruta Nacional 36, Km 601, X5804ZAB Río Cuarto, Córdoba, Argentina
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Smith OM, Olimpi EM, Navarro-Gonzalez N, Cornell KA, Frishkoff LO, Northfield TD, Bowles TM, Edworthy M, Eilers J, Fu Z, Garcia K, Gonthier DJ, Jones MS, Kennedy CM, Latimer CE, Owen JP, Sato C, Taylor JM, Wilson-Rankin EE, Snyder WE, Karp DS. A trait-based framework for predicting foodborne pathogen risk from wild birds. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2022; 32:e2523. [PMID: 34921463 DOI: 10.1002/eap.2523] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Revised: 06/01/2021] [Accepted: 07/26/2021] [Indexed: 06/14/2023]
Abstract
Recent foodborne illness outbreaks have heightened pressures on growers to deter wildlife from farms, jeopardizing conservation efforts. However, it remains unclear which species, particularly birds, pose the greatest risk to food safety. Using >11,000 pathogen tests and 1565 bird surveys covering 139 bird species from across the western United States, we examined the importance of 11 traits in mediating wild bird risk to food safety. We tested whether traits associated with pathogen exposure (e.g., habitat associations, movement, and foraging strategy) and pace-of-life (clutch size and generation length) mediated foodborne pathogen prevalence and proclivities to enter farm fields and defecate on crops. Campylobacter spp. were the most prevalent enteric pathogen (8.0%), while Salmonella and Shiga-toxin producing Escherichia coli (STEC) were rare (0.46% and 0.22% prevalence, respectively). We found that several traits related to pathogen exposure predicted pathogen prevalence. Specifically, Campylobacter and STEC-associated virulence genes were more often detected in species associated with cattle feedlots and bird feeders, respectively. Campylobacter was also more prevalent in species that consumed plants and had longer generation lengths. We found that species associated with feedlots were more likely to enter fields and defecate on crops. Our results indicated that canopy-foraging insectivores were less likely to deposit foodborne pathogens on crops, suggesting growers may be able to promote pest-eating birds and birds of conservation concern (e.g., via nest boxes) without necessarily compromising food safety. As such, promoting insectivorous birds may represent a win-win-win for bird conservation, crop production, and food safety. Collectively, our results suggest that separating crop production from livestock farming may be the best way to lower food safety risks from birds. More broadly, our trait-based framework suggests a path forward for co-managing wildlife conservation and food safety risks in farmlands by providing a strategy for holistically evaluating the food safety risks of wild animals, including under-studied species.
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Affiliation(s)
- Olivia M Smith
- Department of Entomology, University of Georgia, Athens, Georgia, USA
- School of Biological Sciences, Washington State University, Pullman, Washington, USA
| | - Elissa M Olimpi
- Department of Wildlife, Fish, and Conservation Biology, University of California, Davis, California, USA
| | | | - Kevin A Cornell
- School of Biological Sciences, Washington State University, Pullman, Washington, USA
| | - Luke O Frishkoff
- Department of Biology, University of Texas at Arlington, Arlington, Texas, USA
| | - Tobin D Northfield
- Department of Entomology, Tree Fruit Research and Extension Center, Washington State University, Wenatchee, Washington, USA
- Centre for Tropical Environmental Sustainability Science, James Cook University, Cairns, Queensland, Australia
| | - Timothy M Bowles
- Department of Environmental Science, Policy, & Management, University of California, Berkeley, California, USA
| | - Max Edworthy
- Department of Entomology, Washington State University, Pullman, Washington, USA
| | - Johnna Eilers
- School of Biological Sciences, Washington State University, Pullman, Washington, USA
| | - Zhen Fu
- Department of Entomology, Washington State University, Pullman, Washington, USA
- Van Andel Institute, Grand Rapids, Michigan, USA
| | - Karina Garcia
- Department of Entomology, University of Kentucky, Lexington, Kentucky, USA
| | - David J Gonthier
- Department of Entomology, University of Kentucky, Lexington, Kentucky, USA
| | - Matthew S Jones
- Department of Entomology, Tree Fruit Research and Extension Center, Washington State University, Wenatchee, Washington, USA
| | - Christina M Kennedy
- Global Protect Oceans, Lands and Waters Program, The Nature Conservancy, Fort Collins, Colorado, USA
| | - Christopher E Latimer
- Global Protect Oceans, Lands and Waters Program, The Nature Conservancy, Fort Collins, Colorado, USA
| | - Jeb P Owen
- Department of Entomology, Washington State University, Pullman, Washington, USA
| | - Chika Sato
- School of Biological Sciences, Washington State University, Pullman, Washington, USA
| | - Joseph M Taylor
- Department of Entomology, University of Georgia, Athens, Georgia, USA
- Department of Entomology, Washington State University, Pullman, Washington, USA
| | | | - William E Snyder
- Department of Entomology, University of Georgia, Athens, Georgia, USA
- Department of Entomology, Washington State University, Pullman, Washington, USA
| | - Daniel S Karp
- Department of Wildlife, Fish, and Conservation Biology, University of California, Davis, California, USA
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Leonard SR, Simko I, Mammel MK, Richter TKS, Brandl MT. Seasonality, shelf life and storage atmosphere are main drivers of the microbiome and E. coli O157:H7 colonization of post-harvest lettuce cultivated in a major production area in California. ENVIRONMENTAL MICROBIOME 2021; 16:25. [PMID: 34930479 PMCID: PMC8686551 DOI: 10.1186/s40793-021-00393-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Accepted: 11/30/2021] [Indexed: 05/10/2023]
Abstract
BACKGROUND Lettuce is linked to recurrent outbreaks of Shiga toxin-producing Escherichia coli (STEC) infections, the seasonality of which remains unresolved. Infections have occurred largely from processed lettuce, which undergoes substantial physiological changes during storage. We investigated the microbiome and STEC O157:H7 (EcO157) colonization of fresh-cut lettuce of two cultivars with long and short shelf life harvested in the spring and fall in California and stored in modified atmosphere packaging (MAP) at cold and warm temperatures. RESULTS Inoculated EcO157 declined significantly less on the cold-stored cultivar with short shelf life, while multiplying rapidly at 24 °C independently of cultivar. Metagenomic sequencing of the lettuce microbiome revealed that the pre-storage bacterial community was variable but dominated by species in the Erwiniaceae and Pseudomonadaceae. After cold storage, the microbiome composition differed between cultivars, with a greater relative abundance (RA) of Erwiniaceae and Yersiniaceae on the cultivar with short shelf life. Storage at 24 °C shifted the microbiome to higher RAs of Erwiniaceae and Enterobacteriaceae and lower RA of Pseudomonadaceae compared with 6 °C. Fall harvest followed by lettuce deterioration were identified by recursive partitioning as important factors associated with high EcO157 survival at 6 °C, whereas elevated package CO2 levels correlated with high EcO157 multiplication at 24 °C. EcO157 population change correlated with the lettuce microbiome during 6 °C storage, with fall microbiomes supporting the greatest EcO157 survival on both cultivars. Fall and spring microbiomes differed before and during storage at both temperatures. High representation of Pantoea agglomerans was a predictor of fall microbiomes, lettuce deterioration, and enhanced EcO157 survival at 6 °C. In contrast, higher RAs of Erwinia persicina, Rahnella aquatilis, and Serratia liquefaciens were biomarkers of spring microbiomes and lower EcO157 survival. CONCLUSIONS The microbiome of processed MAP lettuce evolves extensively during storage. Under temperature abuse, high CO2 promotes a lettuce microbiome enriched in taxa with anaerobic capability and EcO157 multiplication. In cold storage, our results strongly support a role for season and lettuce deterioration in EcO157 survival and microbiome composition, suggesting that the physiology and microbiomes of fall- and spring-harvested lettuce may contribute to the seasonality of STEC outbreaks associated with lettuce grown in coastal California.
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Affiliation(s)
- Susan R Leonard
- Office of Applied Research and Safety Assessment, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD, USA
| | - Ivan Simko
- Crop Improvement and Protection Research Unit, US Department of Agriculture, Agricultural Research Service, Salinas, CA, USA
| | - Mark K Mammel
- Office of Applied Research and Safety Assessment, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD, USA
| | - Taylor K S Richter
- Office of Applied Research and Safety Assessment, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, MD, USA
| | - Maria T Brandl
- Produce Safety and Microbiology Research Unit, US Department of Agriculture, Agricultural Research Service, Albany, CA, USA.
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11
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Lu A, Gonthier DJ, Sciligo AR, Garcia K, Chiba T, Juárez G, Kremen C. Changes in arthropod communities mediate the effects of landscape composition and farm management on pest control ecosystem services in organically managed strawberry crops. J Appl Ecol 2021. [DOI: 10.1111/1365-2664.14076] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Adrian Lu
- Department of Environmental Science, Policy, and Management University of California Berkeley CA USA
| | | | | | - Karina Garcia
- Department of Entomology University of Kentucky Lexington KY USA
| | - Taiki Chiba
- Department of Environmental Science, Policy, and Management University of California Berkeley CA USA
| | - Gila Juárez
- Department of Environmental Science, Policy, and Management University of California Berkeley CA USA
| | - Claire Kremen
- Department of Environmental Science, Policy, and Management University of California Berkeley CA USA
- Institute for Resources, Environment, and Sustainability Department of Zoology and Biodiversity Research Centre University of British Columbia Vancouver BC Canada
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12
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Glidden CK, Nova N, Kain MP, Lagerstrom KM, Skinner EB, Mandle L, Sokolow SH, Plowright RK, Dirzo R, De Leo GA, Mordecai EA. Human-mediated impacts on biodiversity and the consequences for zoonotic disease spillover. Curr Biol 2021; 31:R1342-R1361. [PMID: 34637744 PMCID: PMC9255562 DOI: 10.1016/j.cub.2021.08.070] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Human-mediated changes to natural ecosystems have consequences for both ecosystem and human health. Historically, efforts to preserve or restore 'biodiversity' can seem to be in opposition to human interests. However, the integration of biodiversity conservation and public health has gained significant traction in recent years, and new efforts to identify solutions that benefit both environmental and human health are ongoing. At the forefront of these efforts is an attempt to clarify ways in which biodiversity conservation can help reduce the risk of zoonotic spillover of pathogens from wild animals, sparking epidemics and pandemics in humans and livestock. However, our understanding of the mechanisms by which biodiversity change influences the spillover process is incomplete, limiting the application of integrated strategies aimed at achieving positive outcomes for both conservation and disease management. Here, we review the literature, considering a broad scope of biodiversity dimensions, to identify cases where zoonotic pathogen spillover is mechanistically linked to changes in biodiversity. By reframing the discussion around biodiversity and disease using mechanistic evidence - while encompassing multiple aspects of biodiversity including functional diversity, landscape diversity, phenological diversity, and interaction diversity - we work toward general principles that can guide future research and more effectively integrate the related goals of biodiversity conservation and spillover prevention. We conclude by summarizing how these principles could be used to integrate the goal of spillover prevention into ongoing biodiversity conservation initiatives.
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Affiliation(s)
| | - Nicole Nova
- Department of Biology, Stanford University, Stanford, CA 94305, USA.
| | - Morgan P Kain
- Department of Biology, Stanford University, Stanford, CA 94305, USA; Natural Capital Project, Stanford University, Stanford, CA 94305, USA
| | | | - Eloise B Skinner
- Department of Biology, Stanford University, Stanford, CA 94305, USA; Centre for Planetary Health and Food Security, Griffith University, Gold Coast, QLD 4222, Australia
| | - Lisa Mandle
- Department of Biology, Stanford University, Stanford, CA 94305, USA; Natural Capital Project, Stanford University, Stanford, CA 94305, USA; Woods Institute for the Environment, Stanford University, Stanford, CA 94305, USA
| | - Susanne H Sokolow
- Woods Institute for the Environment, Stanford University, Stanford, CA 94305, USA; Marine Science Institute, University of California Santa Barbara, Santa Barbara, CA 93106, USA
| | - Raina K Plowright
- Department of Microbiology and Cell Biology, Montana State University, Bozeman, MT 59717, USA
| | - Rodolfo Dirzo
- Department of Biology, Stanford University, Stanford, CA 94305, USA; Woods Institute for the Environment, Stanford University, Stanford, CA 94305, USA
| | - Giulio A De Leo
- Department of Biology, Stanford University, Stanford, CA 94305, USA; Woods Institute for the Environment, Stanford University, Stanford, CA 94305, USA; Hopkins Marine Station, Stanford University, Pacific Grove, CA 93950, USA
| | - Erin A Mordecai
- Department of Biology, Stanford University, Stanford, CA 94305, USA
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13
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Esquivel KE, Carlisle L, Ke A, Olimpi EM, Baur P, Ory J, Waterhouse H, Iles A, Karp DS, Kremen C, Bowles TM. The “Sweet Spot” in the Middle: Why Do Mid-Scale Farms Adopt Diversification Practices at Higher Rates? FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2021. [DOI: 10.3389/fsufs.2021.734088] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
In the past few decades, farmers and researchers have firmly established that biologically diversified farming systems improve ecosystem services both on and off the farm, producing economic benefits for farmers and ecological benefits for surrounding landscapes. However, adoption of these practices has been slow, requiring a more nuanced examination of both barriers and opportunities to improve adoption rates. While previous research has demonstrated that both individual and structural factors shape farmers' decisions about whether to adopt diversification practices, this study aims to understand the interaction of these individual and structural factors, and how they relate to farm scale. Based on 20 interviews with organic lettuce growers on the Central Coast of California, as well as 8 interviews with technical assistance providers who work with these growers, we constructed a typology to help elucidate the distinct contexts that shape growers' decisions about diversification practices. This typology, which reflects the structural influence of land rent and supply chains, divides growers into three categories: limited resource, mid-scale diversified, or wholesale. In this economic context, limited resource and wholesale growers both experience significant barriers that constrain the adoption of diversification practices, while some mid-scale diversified growers have found a “sweet spot” for managing agroecosystems that can succeed in both economic and ecological terms. The key enabling factors that allow these farmers to choose diversification, however, are not directly related to their farm size, but have more to do with secure land tenure, adequate access to capital and resources, and buyers who share their values and are willing to pay a premium. By focusing on these key enabling factors with targeted policies, we believe it is possible to encourage diversification practices on farms at a variety of scales within California's Central Coast.
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14
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Samaddar S, Karp DS, Schmidt R, Devarajan N, McGarvey JA, Pires AFA, Scow K. Role of soil in the regulation of human and plant pathogens: soils' contributions to people. Philos Trans R Soc Lond B Biol Sci 2021; 376:20200179. [PMID: 34365819 DOI: 10.1098/rstb.2020.0179] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
Soil and soil biodiversity play critical roles in Nature's Contributions to People (NCP) # 10, defined as Nature's ability to regulate direct detrimental effects on humans, and on human-important plants and animals, through the control or regulation of particular organisms considered to be harmful. We provide an overview of pathogens in soil, focusing on human and crop pathogens, and discuss general strategies, and examples, of how soils' extraordinarily diverse microbial communities regulate soil-borne pathogens. We review the ecological principles underpinning the regulation of soil pathogens, as well as relationships between pathogen suppression and soil health. Mechanisms and specific examples are presented of how soil and soil biota are involved in regulating pathogens of humans and plants. We evaluate how specific agricultural management practices can either promote or interfere with soil's ability to regulate pathogens. Finally, we conclude with how integrating soil, plant, animal and human health through a 'One Health' framework could lead to more integrated, efficient and multifunctional strategies for regulating detrimental organisms and processes. This article is part of the theme issue 'The role of soils in delivering Nature's Contributions to People'.
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Affiliation(s)
- Sandipan Samaddar
- Department of Land, Air and Water Resources, University of California, Davis, Davis, CA, USA
| | - Daniel S Karp
- Department of Wildlife, Fish, and Conservation Biology, University of California, Davis, Davis, CA, USA
| | - Radomir Schmidt
- Department of Land, Air and Water Resources, University of California, Davis, Davis, CA, USA
| | - Naresh Devarajan
- Department of Wildlife, Fish, and Conservation Biology, University of California, Davis, Davis, CA, USA
| | - Jeffery A McGarvey
- Agricultural Research Service, US Department of Agriculture, Albany, CA, USA
| | - Alda F A Pires
- Department of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, Davis, CA, USA
| | - Kate Scow
- Department of Land, Air and Water Resources, University of California, Davis, Davis, CA, USA
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15
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López-Gálvez F, Gómez PA, Artés F, Artés-Hernández F, Aguayo E. Interactions between Microbial Food Safety and Environmental Sustainability in the Fresh Produce Supply Chain. Foods 2021; 10:foods10071655. [PMID: 34359525 PMCID: PMC8307063 DOI: 10.3390/foods10071655] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2021] [Revised: 07/08/2021] [Accepted: 07/16/2021] [Indexed: 11/16/2022] Open
Abstract
Improving the environmental sustainability of the food supply chain will help to achieve the United Nations Sustainable Development Goals (SDGs). This environmental sustainability is related to different SDGs, but mainly to SDG 2 (Zero Hunger), SDG 12 (Responsible Production and Consumption), SDG 13 (Climate Action), and SDG 15 (Life on Land). The strategies and measures used to improve this aspect of the food supply chain must remain in balance with other sustainability aspects (economic and social). In this framework, the interactions and possible conflicts between food supply chain safety and sustainability need to be assessed. Although priority must be given to safety aspects, food safety policies should be calibrated in order to avoid unnecessary deleterious effects on the environment. In the present review, a number of potential tensions and/or disagreements between the microbial safety and environmental sustainability of the fresh produce supply chain are identified and discussed. The addressed issues are spread throughout the food supply chain, from primary production to the end-of-life of the products, and also include the handling and processing industry, retailers, and consumers. Interactions of fresh produce microbial safety with topics such as food waste, supply chain structure, climate change, and use of resources have been covered. Finally, approaches and strategies that will prove useful to solve or mitigate the potential contradictions between fresh produce safety and sustainability are described and discussed. Upon analyzing the interplay between microbial safety and the environmental sustainability of the fresh produce supply chain, it becomes clear that decisions that are taken to ensure fresh produce safety must consider the possible effects on environmental, economic, and social sustainability aspects. To manage these interactions, a global approach considering the interconnections between human activities, animals, and the environment will be required.
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Affiliation(s)
- Francisco López-Gálvez
- Postharvest and Refrigeration Group, Escuela Técnica Superior de Ingeniería Agronómica (ETSIA), Universidad Politécnica de Cartagena (UPCT), Paseo Alfonso XIII, 48, 30203 Cartagena, Spain; (F.L.-G.); (F.A.); (F.A.-H.)
- Food Quality and Health Group, Institute of Plant Biotechnology (UPCT), Campus Muralla del Mar, 30202 Cartagena, Spain;
| | - Perla A. Gómez
- Food Quality and Health Group, Institute of Plant Biotechnology (UPCT), Campus Muralla del Mar, 30202 Cartagena, Spain;
| | - Francisco Artés
- Postharvest and Refrigeration Group, Escuela Técnica Superior de Ingeniería Agronómica (ETSIA), Universidad Politécnica de Cartagena (UPCT), Paseo Alfonso XIII, 48, 30203 Cartagena, Spain; (F.L.-G.); (F.A.); (F.A.-H.)
- Food Quality and Health Group, Institute of Plant Biotechnology (UPCT), Campus Muralla del Mar, 30202 Cartagena, Spain;
| | - Francisco Artés-Hernández
- Postharvest and Refrigeration Group, Escuela Técnica Superior de Ingeniería Agronómica (ETSIA), Universidad Politécnica de Cartagena (UPCT), Paseo Alfonso XIII, 48, 30203 Cartagena, Spain; (F.L.-G.); (F.A.); (F.A.-H.)
- Food Quality and Health Group, Institute of Plant Biotechnology (UPCT), Campus Muralla del Mar, 30202 Cartagena, Spain;
| | - Encarna Aguayo
- Postharvest and Refrigeration Group, Escuela Técnica Superior de Ingeniería Agronómica (ETSIA), Universidad Politécnica de Cartagena (UPCT), Paseo Alfonso XIII, 48, 30203 Cartagena, Spain; (F.L.-G.); (F.A.); (F.A.-H.)
- Food Quality and Health Group, Institute of Plant Biotechnology (UPCT), Campus Muralla del Mar, 30202 Cartagena, Spain;
- Correspondence:
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16
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Glaize A, Young M, Harden L, Gutierrez-Rodriguez E, Thakur S. The effect of vegetation barriers at reducing the transmission of Salmonella and Escherichia coli from animal operations to fresh produce. Int J Food Microbiol 2021; 347:109196. [PMID: 33906045 DOI: 10.1016/j.ijfoodmicro.2021.109196] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2021] [Revised: 04/03/2021] [Accepted: 04/05/2021] [Indexed: 02/08/2023]
Abstract
Due to the recent outbreaks of Salmonella and Escherichia coli in fresh produce in the United States, the transfer of foodborne pathogens between animal feeding operations and fresh produce continues to be a considerable risk. The purpose of this study was to determine if the establishment of a vegetation barrier (VB) on small-scale sustainable farms could prevent the transmission of Salmonella and E. coli to nearby fresh produce fields. A 5-layer VB (31 × 49 m) was constructed between a dairy farm, a poultry farm, and a nearby produce field. Fresh produce (i.e., romaine lettuce and tomato), animal feces, and environmental (i.e., air, soil, and barrier) samples were collected for 15 months from 2018 to 2019. Four replicates of soil and fresh produce samples were taken from three plots located 10 m, 61 m, and 122 m away from the respective animal locations and processed for Salmonella and E. coli. Air and vegetative strip samples were sampled at 15-day intervals. Multiple colonies were processed from each positive sample, and a total of 143 positive Salmonella (n = 15) and E. coli (n = 128) isolates were retrieved from the soil, produce, air, and fecal samples. Interestingly, 18.2% of the Salmonella and E. coli isolates (n = 26) were recovered from fresh produce (n = 9) samples. Surprisingly, Salmonella isolates (n = 9) were only found in fecal (n = 3) samples collected from the dairy pasture. Data analysis suggests that the VB is an effective tool at reducing the transmission of E. coli and Salmonella from animal farms to fresh produce fields. However, based on phenotypic and genotypic testing, it is clear that fecal samples from animal farms are not the only source of pathogen contamination. This indicates that the environment (e.g., soil and wind), as well as the initial setup of the farm (e.g., proximity to service roads and produce plot placement), can contribute to the contamination of fresh produce. Our study recommends the need for more effective bioremediation and prevention control measures to use in conjunction with VBs to reduce pathogen transmission.
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Affiliation(s)
- Ayanna Glaize
- Department of Population Health & Pathobiology, College of Veterinary Medicine, North Carolina State University, Raleigh, NC 27607, USA
| | - Morgan Young
- Department of Population Health & Pathobiology, College of Veterinary Medicine, North Carolina State University, Raleigh, NC 27607, USA
| | - Lyndy Harden
- Department of Population Health & Pathobiology, College of Veterinary Medicine, North Carolina State University, Raleigh, NC 27607, USA
| | - Eduardo Gutierrez-Rodriguez
- Department of Horticulture and Landscape Architecture College of Agricultural Sciences, Colorado State University, USA
| | - Siddhartha Thakur
- Department of Population Health & Pathobiology, College of Veterinary Medicine, North Carolina State University, Raleigh, NC 27607, USA.
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17
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Lagerstrom KM, Hadly EA. The under-investigated wild side of Escherichia coli: genetic diversity, pathogenicity and antimicrobial resistance in wild animals. Proc Biol Sci 2021; 288:20210399. [PMID: 33849316 PMCID: PMC8059539 DOI: 10.1098/rspb.2021.0399] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Accepted: 03/18/2021] [Indexed: 12/12/2022] Open
Abstract
A striking paucity of information exists on Escherichia coli in wild animals despite evidence that they harbour pathogenic and antimicrobial-resistant E. coli in their gut microbiomes and may even serve as melting pots for novel genetic combinations potentially harmful to human health. Wild animals have been implicated as the source of pathogenic E. coli outbreaks in agricultural production, but a lack of knowledge surrounding the genetics of E. coli in wild animals complicates source tracking and thus contamination curtailment efforts. As human populations continue to expand and invade wild areas, the potential for harmful microorganisms to transfer between humans and wildlife increases. Here, we conducted a literature review of the small body of work on E. coli in wild animals. We highlight the geographic and host taxonomic coverage to date, and in each, identify significant gaps. We summarize the current understanding of E. coli in wild animals, including its genetic diversity, host and geographic distribution, and transmission pathways within and between wild animal and human populations. The knowledge gaps we identify call for greater research efforts to understand the existence of E. coli in wild animals, especially in light of the potentially strong implications for global public health.
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Affiliation(s)
| | - Elizabeth A. Hadly
- Department of Biology, Stanford University, Stanford, CA, USA
- Stanford Woods Institute for the Environment, Stanford University, Stanford, CA, USA
- Center for Innovation in Global Health, Stanford University, Stanford, CA, USA
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18
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Petersen-Rockney M, Baur P, Guzman A, Bender SF, Calo A, Castillo F, De Master K, Dumont A, Esquivel K, Kremen C, LaChance J, Mooshammer M, Ory J, Price MJ, Socolar Y, Stanley P, Iles A, Bowles T. Narrow and Brittle or Broad and Nimble? Comparing Adaptive Capacity in Simplifying and Diversifying Farming Systems. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2021. [DOI: 10.3389/fsufs.2021.564900] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
Humanity faces a triple threat of climate change, biodiversity loss, and global food insecurity. In response, increasing the general adaptive capacity of farming systems is essential. We identify two divergent strategies for building adaptive capacity.Simplifyingprocesses seek to narrowly maximize production by shifting the basis of agricultural production toward centralized control of socially and ecologically homogenized systems.Diversifyingprocesses cultivate social-ecological complexity in order to provide multiple ecosystem services, maintain management flexibility, and promote coordinated adaptation across levels. Through five primarily United States focused cases of distinct agricultural challenges—foodborne pathogens, drought, marginal lands, labor availability, and land access and tenure—we compare simplifying and diversifying responses to assess how these pathways differentially enhance or degrade the adaptive capacity of farming systems in the context of the triple threat. These cases show that diversifying processes can weave a form of broad and nimble adaptive capacity that is fundamentally distinct from the narrow and brittle adaptive capacity produced through simplification. We find that while there are structural limitations and tradeoffs to diversifying processes, adaptive capacity can be facilitated by empowering people and enhancing ecosystem functionality to proactively distribute resources and knowledge where needed and to nimbly respond to changing circumstances. Our cases suggest that, in order to garner the most adaptive benefits from diversification, farming systems should balance the pursuit of multiple goals, which in turn requires an inclusive process for active dialogue and negotiation among diverse perspectives. Instead of locking farming systems into pernicious cycles that reproduce social and ecological externalities, diversification processes can enable nimble responses to a broad spectrum of possible stressors and shocks, while also promoting social equity and ecological sustainability.
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19
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Gutierrez A, DE J, Schneider KR. Prevalence, Concentration, and Antimicrobial Resistance Profiles of Salmonella Isolated from Florida Poultry Litter. J Food Prot 2020; 83:2179-2186. [PMID: 32692820 DOI: 10.4315/jfp-20-215] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Accepted: 07/20/2020] [Indexed: 01/14/2023]
Abstract
ABSTRACT For over a decade, Salmonella contamination has increasingly led to outbreaks of foodborne illness associated with fresh produce. The use of untreated animal manures, or biological soil amendments of animal origin, to amend agricultural soils holds a risk of contamination from foodborne pathogens, such as Salmonella. This study was conducted to determine the prevalence, concentration, serotypes, and antimicrobial resistance profiles of Salmonella in poultry litter from Florida farms. Litter pH, total Kjeldahl nitrogen, total ammonia nitrogen, total phosphorus (P2O5), total potassium (K2O), moisture content, total solids, total ash, organic matter, and aerobic plate count (APC) were also measured. Litter samples (n = 54) were collected from 18 broiler farms across three seasons (spring, summer, and winter). Salmonella concentrations were enumerated using a most-probable-number (MPN) method, and antimicrobial susceptibility testing was performed. The prevalence of Salmonella in litter samples was 61.1%, with a geometric mean of 0.21 ± 20.7 MPN/g. Across all seasons, Salmonella concentrations were not influenced by the chemical, physical, or microbial properties measured. Recovered Salmonella isolates (n = 290) were grouped into serogroups O:4 (43.1%), O:7 (26.9%), O:8 (11.0%), O:1,3,10,19 (7.9%), and O:9,46 (7.2%). Serotyping Salmonella isolates (n = 47) resulted in 12 serotypes, with the most common being Typhimurium (27.7%), Kentucky (17.0%), Enteritidis (14.9%), and Mbandaka (14.9%). Antimicrobial resistance to tetracycline (29.8%), sulfisoxazole (23.4%), and streptomycin (14.9%) was observed. No isolates were resistant to more than two antimicrobial agents. This study provides valuable information for future risk assessments for the use of poultry litter as an untreated biological soil amendment of animal origin. HIGHLIGHTS
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Affiliation(s)
- Alan Gutierrez
- Department of Food Science and Human Nutrition, University of Florida, Gainesville, Florida 32611, USA
| | - Jaysankar DE
- Department of Food Science and Human Nutrition, University of Florida, Gainesville, Florida 32611, USA
| | - Keith R Schneider
- Department of Food Science and Human Nutrition, University of Florida, Gainesville, Florida 32611, USA.,(ORCID: https://orcid.org/0000-0003-0145-3418 [K.R.S.])
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20
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Brennan EB. Sparrow Preferences for Winter Cover Crops in California's Central Coast. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2020. [DOI: 10.3389/fsufs.2020.567579] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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21
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Smith OM, Edworthy A, Taylor JM, Jones MS, Tormanen A, Kennedy CM, Fu Z, Latimer CE, Cornell KA, Michelotti LA, Sato C, Northfield T, Snyder WE, Owen JP. Agricultural intensification heightens food safety risks posed by wild birds. J Appl Ecol 2020. [DOI: 10.1111/1365-2664.13723] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Olivia M. Smith
- School of Biological Sciences Washington State University Pullman WA USA
- Department of Entomology University of Georgia Athens GA USA
| | - Amanda Edworthy
- Department of Entomology Washington State University Pullman WA USA
- Department of Forest and Conservation Sciences University of British Columbia Vancouver BC USA
| | - Joseph M. Taylor
- Department of Entomology University of Georgia Athens GA USA
- Department of Entomology Washington State University Pullman WA USA
| | - Matthew S. Jones
- Department of Entomology Washington State University Pullman WA USA
- WSU‐Tree Fruit Research and Extension Center Wenatchee WA USA
| | - Aaron Tormanen
- School of Biological Sciences Washington State University Pullman WA USA
- Department of Entomology Washington State University Pullman WA USA
- Department of Biological Sciences Arkansas Tech University Russellville AR USA
| | | | - Zhen Fu
- Department of Entomology Washington State University Pullman WA USA
- Department of Entomology Texas A&M University College Station TX USA
| | | | - Kevin A. Cornell
- School of Biological Sciences Washington State University Pullman WA USA
| | - Lucas A. Michelotti
- Department of Entomology University of Georgia Athens GA USA
- Department of Entomology Washington State University Pullman WA USA
| | - Chika Sato
- School of Biological Sciences Washington State University Pullman WA USA
| | - Tobin Northfield
- Department of Entomology Washington State University Pullman WA USA
- WSU‐Tree Fruit Research and Extension Center Wenatchee WA USA
- Centre for Tropical Environmental Sustainability Science James Cook University Brisbane Qld Australia
| | - William E. Snyder
- Department of Entomology University of Georgia Athens GA USA
- Department of Entomology Washington State University Pullman WA USA
| | - Jeb P. Owen
- Department of Entomology Washington State University Pullman WA USA
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22
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Coulombe G, Catford A, Martinez-Perez A, Buenaventura E. Outbreaks of Escherichia coli O157:H7 Infections Linked to Romaine Lettuce in Canada from 2008 to 2018: An Analysis of Food Safety Context. J Food Prot 2020; 83:1444-1462. [PMID: 32297933 DOI: 10.4315/jfp-20-029] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2020] [Accepted: 04/14/2020] [Indexed: 12/19/2022]
Abstract
ABSTRACT Foodborne diseases are a major cause of illness in Canada. One of the main pathogens causing cases and outbreaks of foodborne illness in Canada is Escherichia coli O157:H7. From 2008 to 2018, 11 outbreaks of E. coli O157:H7 infection in Canada were linked to leafy greens, including 7 (63.6%) linked to romaine lettuce, 2 (18.2%) linked to iceberg lettuce, and 2 (18.2%) linked to other or unspecified types of leafy greens. The consumption of lettuce in Canada, the behavior of E. coli O157:H7 on lettuce leaves, and the production practices used for romaine and iceberg lettuce do not seem to explain why a higher number of outbreaks of E. coli O157:H7 infection were linked to romaine than to iceberg lettuce. However, the difference in the shape of iceberg and romaine lettuce heads could be an important factor. Among the seven outbreaks linked to romaine lettuce in Canada between 2008 and 2018, an eastern distribution of cases was observed. Cases from western provinces were reported only twice. The consumption of romaine and iceberg lettuce by the Canadian population does not seem to explain the eastern distribution of cases observed, but the commercial distribution, travel distances, and the storage practices used for lettuce may be important factors. In the past 10 years, the majority of the outbreaks of E. coli O157:H7 infection linked to romaine lettuce occurred during the spring (March to June) and fall (September to December). The timing of these outbreaks may be explained by the availability of lettuce in Canada, the growing region transition periods in the United States, and the seasonality in the prevalence of E. coli O157:H7. The consumption of romaine lettuce by the Canadian population does not explain the timing of the outbreaks observed. HIGHLIGHTS
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Affiliation(s)
- GeneviÈve Coulombe
- Bureau of Microbial Hazards, Food Directorate, Health Canada, 251 Sir Frederick Banting Driveway, Ottawa, Ontario, Canada K1A 0K9
| | - Angela Catford
- Bureau of Microbial Hazards, Food Directorate, Health Canada, 251 Sir Frederick Banting Driveway, Ottawa, Ontario, Canada K1A 0K9
| | - Amalia Martinez-Perez
- Bureau of Microbial Hazards, Food Directorate, Health Canada, 251 Sir Frederick Banting Driveway, Ottawa, Ontario, Canada K1A 0K9
| | - Enrico Buenaventura
- Bureau of Microbial Hazards, Food Directorate, Health Canada, 251 Sir Frederick Banting Driveway, Ottawa, Ontario, Canada K1A 0K9
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23
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Olimpi EM, Garcia K, Gonthier DJ, De Master KT, Echeverri A, Kremen C, Sciligo AR, Snyder WE, Wilson-Rankin EE, Karp DS. Shifts in species interactions and farming contexts mediate net effects of birds in agroecosystems. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2020; 30:e02115. [PMID: 32145709 DOI: 10.1002/eap.2115] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2019] [Revised: 01/07/2020] [Accepted: 01/29/2020] [Indexed: 06/10/2023]
Abstract
Some birds are viewed as pests and vectors of foodborne pathogens in farmlands, yet birds also benefit growers by consuming pests. While many growers seek to prevent birds from accessing their farms, few studies have attempted to quantify the net effects of bird services and disservices, let alone how net effects shift across farm management strategies. We quantified the net effect of birds on crop production across 20 California strawberry (Fragaria × ananassa) farms that varied in local management practices and landscape context. We surveyed farms for berry damage and bird droppings (as potential sources of pathogens) and implemented a large-scale exclusion experiment to quantify the impact of birds on production. We found that birds had only a slightly negative overall impact on strawberry production, reducing economic value by 3.6%. Direct bird damage and intraguild predation contributed equally to this net effect, underscoring the importance of indirect trophic interactions that may be less apparent to growers. In simple landscapes (e.g., low proportions of surrounding seminatural habitat), birds provided pest control in the interiors of farm fields, and costs from bird damage to crops peaked at field edges. In complex landscapes (e.g., high proportions of seminatural habitat), birds were more likely to disrupt pest control by feeding as intraguild predators. Nonetheless, seminatural habitat dampened bird services and disservices, and our models predicted that removing habitat around farm fields would increase costs from bird damage to crops by up to 76%. Fecal contamination of crops was extremely rare (0.01%). However, both fecal contamination and bird damage did increase on farms with higher densities of fencing and wires, where birds often perch. Our results demonstrate that maintaining seminatural habitat around farms may enhance bird diversity and mitigate bird damage without increasing food safety risks. We also show that the net effects of birds depend on farming context and vary in complex ways in relation to locations within a farm, local farm attributes, and the surrounding landscape. This context-specific variation must be considered in order to optimize the management of wild birds in agroecosystems.
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Affiliation(s)
- E M Olimpi
- Department of Wildlife, Fish, and Conservation Biology, University of California, 1088 Academic Surge, 455 Crocker Lane, Davis, California, 95616, USA
| | - K Garcia
- Department of Entomology, University of Kentucky, Lexington, Kentucky, 40546, USA
| | - D J Gonthier
- Department of Entomology, University of Kentucky, Lexington, Kentucky, 40546, USA
| | - K T De Master
- Environmental Science, Policy, and Management, University of California, Mulford Hall, 130 Hilgard Way, Berkeley, California, 94720, USA
| | - A Echeverri
- Institute for Resources, Environment and Sustainability, University of British Columbia, Vancouver Campus, AERL Building, 429-2202 Main Mall, Vancouver, British Columbia, V6T 1Z4, Canada
| | - C Kremen
- Environmental Science, Policy, and Management, University of California, Mulford Hall, 130 Hilgard Way, Berkeley, California, 94720, USA
- Institute for Resources, Environment and Sustainability, University of British Columbia, Vancouver Campus, AERL Building, 429-2202 Main Mall, Vancouver, British Columbia, V6T 1Z4, Canada
- Biodiversity Research Centre, Department of Zoology, University of British Columbia, 2212 Main Mall, Vancouver, British Columbia, V6T 1Z4, Canada
| | - A R Sciligo
- Environmental Science, Policy, and Management, University of California, Mulford Hall, 130 Hilgard Way, Berkeley, California, 94720, USA
| | - W E Snyder
- Department of Entomology, Washington State University, PO Box 646382, Pullman, Washington, 99164, USA
| | - E E Wilson-Rankin
- Department of Entomology, University of California, 165 Entomology Bldg., Citrus Drive, Riverside, California, 92521, USA
| | - D S Karp
- Department of Wildlife, Fish, and Conservation Biology, University of California, 1088 Academic Surge, 455 Crocker Lane, Davis, California, 95616, USA
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Carriage and Subtypes of Foodborne Pathogens Identified in Wild Birds Residing near Agricultural Lands in California: a Repeated Cross-Sectional Study. Appl Environ Microbiol 2020; 86:AEM.01678-19. [PMID: 31757824 PMCID: PMC6974635 DOI: 10.1128/aem.01678-19] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2019] [Accepted: 11/12/2019] [Indexed: 02/04/2023] Open
Abstract
The shedding dynamics of foodborne pathogens by wild birds on farmland are not well characterized. This yearlong study sampled wild birds for foodborne pathogens within agricultural lands in northern California. There was a low prevalence of Salmonella spp., Escherichia coli O157:H7, and non-O157 Shiga-toxin producing E. coli (prevalence, 0.34% to 0.50%) identified in bird populations in this study. However, pathogens of public health importance (such as Salmonella Newport, E. coli O157:H7, and STEC O103 and O26) were identified in fecal samples, and two birds carried STEC on their feet or feathers. Identical pathogen strains were shared episodically among birds and between wild geese and free-range cattle. This result suggests a common source of contamination in the environment and potential transmission between species. These findings can be used to assess the risk posed by bird intrusions in produce fields and enhance policy decisions toward the comanagement of food safety and farmland habitat conservation. Current California agricultural practices strive to comanage food safety and habitat conservation on farmland. However, the ecology of foodborne pathogens in wild bird populations, especially those avian species residing in proximity to fresh produce production fields, is not fully understood. In this repeated cross-sectional study, avifauna within agricultural lands in California were sampled over 1 year. Feces, oral swabs, and foot/feather swabs were cultured for zoonotic Salmonella spp., Escherichia coli O157:H7, and non-O157 Shiga toxin-producing E. coli (STEC) and characterized by serotyping and pulsed-field gel electrophoresis. Of 60 avian species sampled, 8 species (13.3%, bird groups of sparrows, icterids, geese, wrens, and kinglets) were positive for at least one of these foodborne pathogens. At the individual bird level, the detection of foodborne pathogens was infrequent in feces (n = 583; 0.5% Salmonella, 0.34% E. coli O157:H7, and 0.5% non-O157 STEC) and in feet/feathers (n = 401; 0.5% non-O157 STEC), and it was absent from oral swabs (n = 353). Several subtypes of public health importance were identified, including Salmonella enterica serotype Newport, E. coli O157:H7, and STEC serogroups O103 and O26. In late summer and autumn, the same STEC subtype was episodically found in several individuals of the same and different avian species, suggesting a common source of contamination in the environment. Sympatric free-range cattle shared subtypes of STEC O26 and O163 with wild geese. A limited rate of positive detection in wild birds provides insights into broad risk profile for contamination considerations but cannot preclude or predict risk on an individual farm. IMPORTANCE The shedding dynamics of foodborne pathogens by wild birds on farmland are not well characterized. This yearlong study sampled wild birds for foodborne pathogens within agricultural lands in northern California. There was a low prevalence of Salmonella spp., Escherichia coli O157:H7, and non-O157 Shiga-toxin producing E. coli (prevalence, 0.34% to 0.50%) identified in bird populations in this study. However, pathogens of public health importance (such as Salmonella Newport, E. coli O157:H7, and STEC O103 and O26) were identified in fecal samples, and two birds carried STEC on their feet or feathers. Identical pathogen strains were shared episodically among birds and between wild geese and free-range cattle. This result suggests a common source of contamination in the environment and potential transmission between species. These findings can be used to assess the risk posed by bird intrusions in produce fields and enhance policy decisions toward the comanagement of food safety and farmland habitat conservation.
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Olimpi EM, Baur P, Echeverri A, Gonthier D, Karp DS, Kremen C, Sciligo A, De Master KT. Evolving Food Safety Pressures in California's Central Coast Region. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2019. [DOI: 10.3389/fsufs.2019.00102] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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26
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Chaplin-Kramer R, O'Rourke M, Schellhorn N, Zhang W, Robinson BE, Gratton C, Rosenheim JA, Tscharntke T, Karp DS. Measuring What Matters: Actionable Information for Conservation Biocontrol in Multifunctional Landscapes. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2019. [DOI: 10.3389/fsufs.2019.00060] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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27
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Hughes DF, Green ML, Warner JK, Davidson PC. There's a frog in my salad! A review of online media coverage for wild vertebrates found in prepackaged produce in the United States. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 675:1-12. [PMID: 31022609 DOI: 10.1016/j.scitotenv.2019.03.254] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Revised: 03/12/2019] [Accepted: 03/17/2019] [Indexed: 06/09/2023]
Abstract
Prepackaged leafy green vegetables represent one of the fastest growing segments of the fresh-produce industry in the United States. Several steps in the production process have been mechanized to meet the downstream demand for prebagged lettuces. The growth in this market, however, has come with drawbacks, and chief among them are consumers finding wild animals in prepackaged crops. These incidents may signal an overburdened produce supply chain, but we currently lack the information needed to determine if this is a food-safety problem or food-quality concern. Here, we address this gap by reviewing online media coverage of wild vertebrates found in prepackaged produce items by customers in the United States. We discovered 40 independent incidents since 2003 with 95% having occurred during 2008-2018, suggesting that the frequency of incidents may have increased during the last decade. The minority of incidents included wild animals found in organic produce (27.5%), whereas the majority involved conventionally grown crops (72.5%). Most incidents involved amphibians (52.5%) and reptiles (22.5%), while fewer contained mammals (17.5%) and birds (7.5%). Frogs and toads made up all of the amphibian-related incidents, with more than 60% comprising small-bodied treefrogs found in various types of fresh leafy greens. At least seven incidents involved Pacific Treefrogs (Hyliola regilla) and three comprised Green Anoles (Anolis carolinensis). One lizard and nine frogs were found alive, and at least two frogs were released into non-native areas. This is the first review quantifying incidents of vertebrates found by customers in prepackaged produce, yet it remains unclear whether these occurrences indicate a food-safety crisis or a complaint against food quality. Nevertheless, wild animals can spread diseases to humans via contaminated produce, therefore we contend that industry professionals can reduce the potential health risk to their consumers and negative economic consequences to themselves through increased attention to this matter.
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Affiliation(s)
- Daniel F Hughes
- Department of Animal Sciences, University of Illinois Urbana-Champaign, 1207 West Gregory Drive, Urbana, IL 61801, USA; Department of Agricultural and Biological Engineering, University of Illinois Urbana-Champaign, 1304 West Pennsylvania Avenue, Urbana, IL 61801, USA.
| | - Michelle L Green
- Department of Animal Sciences, University of Illinois Urbana-Champaign, 1207 West Gregory Drive, Urbana, IL 61801, USA; Department of Biological Sciences, University of South Florida Saint Petersburg, 140 7th Avenue South, Saint Petersburg, FL 33701, USA
| | - Jonathan K Warner
- Texas Parks & Wildlife Department, 10 Parks and Wildlife Drive, Port Arthur, TX 77640, USA
| | - Paul C Davidson
- Department of Agricultural and Biological Engineering, University of Illinois Urbana-Champaign, 1304 West Pennsylvania Avenue, Urbana, IL 61801, USA.
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Gonthier DJ, Sciligo AR, Karp DS, Lu A, Garcia K, Juarez G, Chiba T, Gennet S, Kremen C. Bird services and disservices to strawberry farming in Californian agricultural landscapes. J Appl Ecol 2019. [DOI: 10.1111/1365-2664.13422] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- David J. Gonthier
- Department of Entomology University of Kentucky Lexington Kentucky
- Department of Environmental Science, Policy, and Management University of California Berkeley California
| | - Amber R. Sciligo
- Department of Environmental Science, Policy, and Management University of California Berkeley California
- The Organic Center Washington District of Columbia
| | - Daniel S. Karp
- Department of Wildlife, Fish, and Conservation Biology University of California Davis California
| | - Adrian Lu
- Department of Environmental Science, Policy, and Management University of California Berkeley California
| | - Karina Garcia
- Department of Entomology University of Kentucky Lexington Kentucky
- Department of Environmental Science, Policy, and Management University of California Berkeley California
| | - Gila Juarez
- Department of Environmental Science, Policy, and Management University of California Berkeley California
| | - Taiki Chiba
- Department of Environmental Science, Policy, and Management University of California Berkeley California
| | | | - Claire Kremen
- Department of Environmental Science, Policy, and Management University of California Berkeley California
- Environment and Sustainability and Biodiversity Research Centre Institute of Resources, University of British Columbia Vancouver BC Canada
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29
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Countryside Biogeography: the Controls of Species Distributions in Human-Dominated Landscapes. ACTA ACUST UNITED AC 2019. [DOI: 10.1007/s40823-019-00037-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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30
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Jones MS, Fu Z, Reganold JP, Karp DS, Besser TE, Tylianakis JM, Snyder WE. Organic farming promotes biotic resistance to foodborne human pathogens. J Appl Ecol 2019. [DOI: 10.1111/1365-2664.13365] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Matthew S. Jones
- Department of EntomologyWashington State University Pullman Washington
- Tree Fruit Research and Extension CenterWashington State University Wenatchee Washington
| | - Zhen Fu
- Department of EntomologyWashington State University Pullman Washington
| | - John P. Reganold
- Department of Crop and Soil SciencesWashington State University Pullman Washington
| | - Daniel S. Karp
- Department of Wildlife, Fish, and Conservation BiologyUniversity of California at Davis Davis California
| | - Thomas E. Besser
- School of Veterinary MedicineWashington State University Pullman Washington
| | - Jason M. Tylianakis
- Bio‐Protection Research CentreSchool of Biological SciencesUniversity of Canterbury Christchurch New Zealand
- Department of Life SciencesImperial College London Berkshire UK
| | - William E. Snyder
- Department of EntomologyWashington State University Pullman Washington
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Choi JR, Yong KW, Choi JY, Cowie AC. Emerging Point-of-care Technologies for Food Safety Analysis. SENSORS (BASEL, SWITZERLAND) 2019; 19:E817. [PMID: 30781554 PMCID: PMC6412947 DOI: 10.3390/s19040817] [Citation(s) in RCA: 73] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/30/2019] [Revised: 02/14/2019] [Accepted: 02/14/2019] [Indexed: 02/08/2023]
Abstract
Food safety issues have recently attracted public concern. The deleterious effects of compromised food safety on health have rendered food safety analysis an approach of paramount importance. While conventional techniques such as high-performance liquid chromatography and mass spectrometry have traditionally been utilized for the detection of food contaminants, they are relatively expensive, time-consuming and labor intensive, impeding their use for point-of-care (POC) applications. In addition, accessibility of these tests is limited in developing countries where food-related illnesses are prevalent. There is, therefore, an urgent need to develop simple and robust diagnostic POC devices. POC devices, including paper- and chip-based devices, are typically rapid, cost-effective and user-friendly, offering a tremendous potential for rapid food safety analysis at POC settings. Herein, we discuss the most recent advances in the development of emerging POC devices for food safety analysis. We first provide an overview of common food safety issues and the existing techniques for detecting food contaminants such as foodborne pathogens, chemicals, allergens, and toxins. The importance of rapid food safety analysis along with the beneficial use of miniaturized POC devices are subsequently reviewed. Finally, the existing challenges and future perspectives of developing the miniaturized POC devices for food safety monitoring are briefly discussed.
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Affiliation(s)
- Jane Ru Choi
- Department of Mechanical Engineering, University of British Columbia, 2054⁻6250 Applied Science Lane, Vancouver, BC V6T 1Z4, Canada.
- Centre for Blood Research, Life Sciences Centre, University of British Columbia, 2350 Health Sciences Mall, Vancouver, BC V6T 1Z3, Canada.
| | - Kar Wey Yong
- Department of Chemical & Petroleum Engineering, Schulich School of Engineering, University of Calgary, Calgary, AB T2N 1N4, Canada.
| | - Jean Yu Choi
- Faculty of Medicine, University of Dundee, Dow Street, Dundee DD1 5EH, UK.
| | - Alistair C Cowie
- Faculty of Medicine, University of Dundee, Dow Street, Dundee DD1 5EH, UK.
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32
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Kleijn D, Bommarco R, Fijen TP, Garibaldi LA, Potts SG, van der Putten WH. Ecological Intensification: Bridging the Gap between Science and Practice. Trends Ecol Evol 2019; 34:154-166. [DOI: 10.1016/j.tree.2018.11.002] [Citation(s) in RCA: 223] [Impact Index Per Article: 44.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2018] [Revised: 10/31/2018] [Accepted: 11/07/2018] [Indexed: 01/22/2023]
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Abstract
ABSTRACT
Advancements in agriculture and food processing techniques have been instrumental in the development of modern human societies. Vast improvements in agronomic practices, handling, and processing have allowed us to produce and preserve mass quantities of food. Yet despite all these innovations and potentially as a consequence of these mass production practices, more and more outbreaks of human pathogens linked to raw and processed foods are identified every year. It is evident that our increased capacity for microbial detection has contributed to the greater number of outbreaks detected. However, our understanding of how these events originate and what agronomic, packaging, and environmental factors influence the survival, persistence, and proliferation of human pathogens remains of scientific debate. This review seeks to identify those past and current challenges to the safety of fresh produce and focuses on production practices and how those impact produce safety. It reflects on 20 years of research, industry guidelines, and federal standards and how they have evolved to our current understanding of fresh produce safety. This document is not intended to summarize and describe all fruit and vegetable farming practices across the United States and the rest of the world. We understand the significant differences in production practices that exist across regions. This review highlights those general farming practices that significantly impact past and current food safety issues. It focuses on current and future research needs and on preharvest food safety control measures in fresh-produce safety that could provide insight into the mechanisms of pathogen contamination, survival, and inactivation under field and packinghouse conditions.
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Worley JN, Flores KA, Yang X, Chase JA, Cao G, Tang S, Meng J, Atwill ER. Prevalence and Genomic Characterization of Escherichia coli O157:H7 in Cow-Calf Herds throughout California. Appl Environ Microbiol 2017; 83:e00734-17. [PMID: 28550057 PMCID: PMC5541215 DOI: 10.1128/aem.00734-17] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2017] [Accepted: 05/17/2017] [Indexed: 01/12/2023] Open
Abstract
Escherichia coli serotype O157:H7 is a zoonotic food- and waterborne bacterial pathogen that causes a high hospitalization rate and can cause life-threatening complications. Increasingly, E. coli O157:H7 infections appear to originate from fresh produce. Ruminants, such as cattle, are a prominent reservoir of E. coli O157:H7 in the United States. California is one of the most agriculturally productive regions in the world for fresh produce, beef, and milk. The close proximity of fresh produce and cattle presents food safety challenges on a uniquely large scale. We performed a survey of E. coli O157:H7 on 20 farms in California to observe the regional diversity and prevalence of E. coli O157:H7. Isolates were obtained from enrichment cultures of cow feces. Some farms were sampled on two dates. Genomes from isolates were sequenced to determine their relatedness and pathogenic potential. E. coli O157:H7 was isolated from approximately half of the farms. The point prevalence of E. coli O157:H7 on farms was highly variable, ranging from zero to nearly 90%. Within farms, generally one or a few lineages were found, even when the rate of isolation was high. On farms with high isolation rates, a single clonal lineage accounted for most of the isolates. Farms that were visited months after the first visit might have had the same lineages of E. coli O157:H7. Strains of E. coli O157:H7 may be persistent for months on farms.IMPORTANCE This survey of 20 cow-calf operations from different regions of California provides an in depth look at resident Escherichia coli O157:H7 populations at the molecular level. E. coli O157:H7 is found to have a highly variable prevalence, and with whole-genome sequencing, high prevalences in herds were found to be due to a single lineage shed from multiple cows. Few repeat lineages were found between farms in this area; therefore, we predict that E. coli O157:H7 has significant diversity in this area beyond what is detected in this survey. All isolates from this study were found to have pathogenic potential based on the presence of key virulence gene sequences. This represents a novel insight into pathogen diversity within a single subtype and will inform future attempts to survey regional pathogen populations.
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Affiliation(s)
- Jay N Worley
- Joint Institute for Food Safety and Applied Nutrition, University of Maryland, College Park, Maryland, USA
| | - Kristopher A Flores
- Western Center for Food Safety, University of California, Davis, Davis, California, USA
| | - Xun Yang
- Department of Nutrition and Food Science, University of Maryland, College Park, Maryland, USA
| | - Jennifer A Chase
- Western Center for Food Safety, University of California, Davis, Davis, California, USA
| | - Guojie Cao
- Joint Institute for Food Safety and Applied Nutrition, University of Maryland, College Park, Maryland, USA
| | - Shuai Tang
- Department of Nutrition and Food Science, University of Maryland, College Park, Maryland, USA
| | - Jianghong Meng
- Joint Institute for Food Safety and Applied Nutrition, University of Maryland, College Park, Maryland, USA
| | - Edward R Atwill
- Western Center for Food Safety, University of California, Davis, Davis, California, USA
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Philpott SM, Bichier P. Local and landscape drivers of predation services in urban gardens. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2017; 27:966-976. [PMID: 28083983 DOI: 10.1002/eap.1500] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2016] [Revised: 11/27/2016] [Accepted: 12/22/2016] [Indexed: 06/06/2023]
Abstract
In agroecosystems, local and landscape features, as well as natural enemy abundance and richness, are significant predictors of predation services that may result in biological control of pests. Despite the increasing importance of urban gardening for provisioning of food to urban populations, most urban gardeners suffer from high pest problems, and have little knowledge about how to manage their plots to increase biological control services. We examined the influence of local, garden scale (i.e., herbaceous and arboreal vegetation abundance and diversity, ground cover) and landscape (i.e., landscape diversity and surrounding land use types) characteristics on predation services provided by naturally occurring predators in 19 urban gardens in the California central coast. We introduced sentinel pests (moth eggs and larvae and pea aphids) onto greenhouse-raised plants taken to gardens and assigned to open or bagged (predator exclosure) treatments. We found high predation rates with between 40% and 90% of prey items removed in open treatments. Predation services varied with local and landscape factors, but significant predictors differed by prey species. Predation of eggs and aphids increased with vegetation complexity in gardens, but larvae predation declined with vegetation complexity. Smaller gardens experienced higher predation services, likely due to increases in predator abundance in smaller gardens. Several ground cover features influenced predation services. In contrast to patterns in rural agricultural landscapes, predation on aphids declined with increases in landscape diversity. In sum, we report the relationships between several local management factors, as well as landscape surroundings, and implications for garden management.
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Affiliation(s)
- Stacy M Philpott
- Department of Environmental Studies, 1156 High Street, University of California, Santa Cruz, Santa Cruz, California, 95064, USA
| | - Peter Bichier
- Department of Environmental Studies, 1156 High Street, University of California, Santa Cruz, Santa Cruz, California, 95064, USA
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Wang S, Weller D, Falardeau J, Strawn LK, Mardones FO, Adell AD, Moreno Switt AI. Food safety trends: From globalization of whole genome sequencing to application of new tools to prevent foodborne diseases. Trends Food Sci Technol 2016. [DOI: 10.1016/j.tifs.2016.09.016] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Karp DS, Moses R, Gennet S, Jones MS, Joseph S, M'Gonigle LK, Ponisio LC, Snyder WE, Kremen C. Agricultural practices for food safety threaten pest control services for fresh produce. J Appl Ecol 2016. [DOI: 10.1111/1365-2664.12707] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Daniel S. Karp
- Department of Environmental Science, Policy and Management University of California Berkeley CA 94720 USA
- The Nature Conservancy San Francisco CA 94105 USA
| | - Rebekah Moses
- Swanton Pacific Ranch California Polytechnic State University Davenport CA 95017 USA
| | - Sasha Gennet
- The Nature Conservancy San Francisco CA 94105 USA
| | - Matthew S. Jones
- Department of Entomology Washington State University Pullman WA 99164 USA
| | - Shimat Joseph
- University of California Cooperative Extension Salinas CA 93901 USA
| | - Leithen K. M'Gonigle
- Department of Environmental Science, Policy and Management University of California Berkeley CA 94720 USA
- Department of Biological Science Florida State University Tallahassee FL 32306 USA
| | - Lauren C. Ponisio
- Department of Environmental Science, Policy and Management University of California Berkeley CA 94720 USA
| | - William E. Snyder
- Department of Entomology Washington State University Pullman WA 99164 USA
| | - Claire Kremen
- Department of Environmental Science, Policy and Management University of California Berkeley CA 94720 USA
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38
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Warton DI, Lyons M, Stoklosa J, Ives AR. Three points to consider when choosing a
LM
or
GLM
test for count data. Methods Ecol Evol 2016. [DOI: 10.1111/2041-210x.12552] [Citation(s) in RCA: 105] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- David I. Warton
- School of Mathematics and Statistics and Evolution & Ecology Research Centre University of New South Wales NSW 2052 Australia
| | - Mitchell Lyons
- School of Biological, Earth and Environmental Sciences University of New South Wales NSW 2052 Australia
| | - Jakub Stoklosa
- School of Mathematics and Statistics and Evolution & Ecology Research Centre University of New South Wales NSW 2052 Australia
| | - Anthony R. Ives
- Department of Zoology University of Wisconsin‐Madison Madison WI 53706 USA
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