Valence tautomerism in synthetic models of cytochrome P450

Selective Cobalt-Mediated Formation of Hydrogen Peroxide from Water under Mild Conditions via Ligand Redox Non-Innocence

Despite the broad importance of hydrogen peroxide (H2O2) in oxidative transformations, there are comparatively few viable routes for its production. The majority of commercial H2O2 is currently produced by the stepwise reduction of dioxygen (O2) via the anthraquinone process, but direct electrochemical formation from water (H2O) would have several advantages─namely, avoiding flammable gases or stepwise separations. However, the selective oxidation of H2O to form H2O2 over the thermodynamically favored product of O2 is a difficult synthetic challenge. Here, we present a molecular H2O oxidation system with excellent selectivity for H2O2 that functions both stoichiometrically and catalytically. We observe high efficiency for electrocatalytic H2O2 production at low overpotential with no O2 observed under any conditions. Mechanistic studies with both calculations and kinetic analyses from isolated intermediates suggest that H2O2 formation occurs in a bimolecular fashion via a dinuclear H2O2-bridged intermediate with an important role for a redox non-innocent ligand. This system showcases the ability of metal-ligand cooperativity and strategic design of the secondary coordination sphere to promote kinetically and thermodynamically challenging selectivity in oxidative catalysis.

Catalysis and Electron Transfer in De Novo Designed Metalloproteins

One of the hallmark advances in our understanding of metalloprotein function is showcased in our ability to design new, non-native, catalytically active protein scaffolds. This review highlights progress and milestone achievements in the field of de novo metalloprotein design focused on reports from the past decade with special emphasis on de novo designs couched within common subfields of bioinorganic study: heme binding proteins, monometal- and dimetal-containing catalytic sites, and metal-containing electron transfer sites. Within each subfield, we highlight several of what we have identified as significant and important contributions to either our understanding of that subfield or de novo metalloprotein design as a discipline. These reports are placed in context both historically and scientifically. General suggestions for future directions that we feel will be important to advance our understanding or accelerate discovery are discussed.

Iron(III) Complexes of a Hexadentate Thioether-Appended 2-Aminophenol Ligand: Redox-Driven Spin State Switchover

A green complex [Fe(L³)] (1), supported by the deprotonated form of a hexadentate noninnocent redox-active thioether-appended 2-aminophenolate ligand (H₄L³ = N,N'-bis(2-hydroxy-3,5-di-tert-butylphenyl)-2,2'-diamino(diphenyldithio)ethane), has been synthesized and structurally characterized at 100(2) K and 298(2) K. In CH₂Cl₂, 1 displays two oxidative and a reductive one-electron redox processes at E_1/2 values of -0.52 and 0.20 V, and -0.85 V versus the Fc⁺/Fc redox couple, respectively. The one-electron oxidized 1⁺ and one-electron reduced 1^- forms, isolated as a blackish-blue solid 1(PF₆)·CH₂Cl₂ (2) and a gray solid [Co(η⁵-C₅H₅)₂]1·DMF (3), have been structurally characterized at 100(2) K. Structural parameters at 100 K of the ligand backbone and metrical oxidation state values unambiguously establish the electronic states as [Fe^III{(L^AP_O,N)^2-}{(L^ISQ_O,N)^•-}{(L_S,S)⁰}] (1) (two tridentate halves are electronically asymmetric-ligand mixed-valency), [Fe^III{(L^ISQ_O,N)^•-}{(L^ISQ_O,N)^•-}{(L_S,S)⁰}]⁺ (1⁺), and [Fe^III{(L^AP_O,N)^2-}{(L^AP_O,N)^2-}{(L_S,S)⁰}]^- (1^-) [dianionic 2-amidophenolate(2-) (L^AP_O,N)^2- and monoanionic 2-iminobenzosemiquinonate(1-) π-radical (S_rad = 1/2) (L^ISQ)^•- redox level]. Mössbauer spectral data of 1 at 295, 200, and 80 K reveal that it has a major low-spin (ls)-Fe(III) and a minor ls-Fe(II) component (redox isomers), and at 7 K, the major component exists exclusively. Thus, in 1, the occurrence of a thermally driven valence-tautomeric (VT) equilibrium (asymmetric) [Fe^III{(L^AP_O,N)^2-}{(L^ISQ_O,N)^•-}{(L_S,S)⁰}] ⇌ (symmetric) [Fe^II{(L^ISQ_O,N)^•-}{(L^ISQ_O,N)^•-}{(L_S,S)⁰}] (80-295 K) is implicated. Mössbauer spectral parameters unequivocally establish that 1⁺ is a ls-Fe(III) complex. In contrast, the monoanion 1^- contains a high-spin (hs)-Fe(III) center (S_Fe = 5/2), as is deduced from its Mössbauer and EPR spectra. Complexes 1-3 possess total spin ground states S_t = 0, 1/2, and 5/2, respectively, based on ¹H NMR and EPR spectra, the variable-temperature (2-300 K) magnetic behavior of 2, and the μ_eff value of 3 at 300 K. Broken-symmetry density functional theory (DFT) calculations at the B3LYP-level of theory reveal that the unpaired electron in 1⁺/2 is due to the (L^ISQ)^•- redox level [ls-Fe(III) (S_Fe = 1/2) is strongly antiferromagnetically coupled to one of the (L^ISQ)^•- radicals (S_rad = 1/2)], and 1^-/3 is a hs-Fe(III) complex, supported by (L³)^4- with two-halves in the (L^AP)^2- redox level. Complex 1 can have either a symmetric or asymmetric electronic state. As per DFT calculation, the former state is stabilized by -3.9 kcal/mol over the latter (DFT usually stabilizes electronically symmetric structure). Time-dependent (TD)-DFT calculations shed light on the origin of observed UV-vis-NIR spectral absorptions for 1-3 and corroborate the results of spectroelectrochemical experiments (300-1100 nm) on 1 (CH₂Cl₂; 298 K). Variable-temperature (218-298 K; CH₂Cl₂) absorption spectral (400-1000 nm) studies on 1 justify the presence of VT equilibrium in the solution-state.

The Biologically Relevant Coordination Chemistry of Iron and Nitric Oxide: Electronic Structure and Reactivity

Nitric oxide (NO) is an important signaling molecule that is involved in a wide range of physiological and pathological events in biology. Metal coordination chemistry, especially with iron, is at the heart of many biological transformations involving NO. A series of heme proteins, nitric oxide synthases (NOS), soluble guanylate cyclase (sGC), and nitrophorins, are responsible for the biosynthesis, sensing, and transport of NO. Alternatively, NO can be generated from nitrite by heme- and copper-containing nitrite reductases (NIRs). The NO-bearing small molecules such as nitrosothiols and dinitrosyl iron complexes (DNICs) can serve as an alternative vehicle for NO storage and transport. Once NO is formed, the rich reaction chemistry of NO leads to a wide variety of biological activities including reduction of NO by heme or non-heme iron-containing NO reductases and protein post-translational modifications by DNICs. Much of our understanding of the reactivity of metal sites in biology with NO and the mechanisms of these transformations has come from the elucidation of the geometric and electronic structures and chemical reactivity of synthetic model systems, in synergy with biochemical and biophysical studies on the relevant proteins themselves. This review focuses on recent advancements from studies on proteins and model complexes that not only have improved our understanding of the biological roles of NO but also have provided foundations for biomedical research and for bio-inspired catalyst design in energy science.

Tailoring Surface Properties of Electrodes for Synchronous Enhanced Extracellular Electron Transfer and Enriched Exoelectrogens in Microbial Fuel Cells

An extracellular electron transfer (EET) process between an electroactive biofilm and an electrode is a crucial step for the performance of microbial fuel cells (MFCs), which is highly related to the enrichment of exoelectrogens and the electrocatalytic activity of the electrode. Herein, an efficient N- and Fe-abundant carbon cloth (CC) electrode with the comodification of iron porphyrin (FePor) and polyquaternium-7 (PQ) was synthesized using a facile solvent evaporation and immersion method and developed as an anode (named FePor-PQ) in MFCs. The surface structural characterizations confirmed the successful introduction of N and Fe atoms, whereas FePor-PQ achieved the N content of 9.59 at %, which may offer various active sites for EET. The introduction of PQ contributed to improving the surface hydrophilicity, providing the composite electrode good biocompatibility for bacterial attachment and colonization as well as substrate diffusion. Based on the advantages, the MFC with the FePor-PQ anode produced a maximum power density of 2165.7 mW m^-2, strikingly higher than those of CC (1124.0 mW m^-2), PQ (1668.8 mW m^-2), and FePor (1978.9 mW m^-2). Furthermore, with the EET mediated by the binding of flavins and c-type cytochromes on the outer membrane was enhanced prominently, the typical exoelectrogen Geobacter was enriched up to 55.84% in the FePor-PQ anode biofilm. This work reveals a synergistic effect from heteroatom coating and surface properties tailoring to boost both the EET efficiency and exoelectrogen enrichment for enhancing MFC performance, which also provides valuable insights for designing electrodes in other bio-electrochemical systems.

Molecular Valence Tautomeric Metal Complexes for Chemosensing

Switchable valence tautomeric metal complexes have been long suggested for applications as chemosensors. However, no such molecular sensors have been yet reported. Here, we present a concept for sensing and the first prototype molecular sensor based on valence tautomeric cobalt-dioxolenes. A valence tautomeric cobalt-dioxolene complex [ls-Co^III(SQ^•)(Cat)(stypy)₂] ⇄ [hs-Co^II(SQ^•)₂(stypy)₂] 1 (ls = low spin, hs = high spin, Cat = 3,5-di-tert-butylcatecholate(2-), SQ = one-electron oxidized, benzosemiquinone(1-) form of Cat, stypy = trans-4-styrylpyridine) has been used as a molecular sensor. The lability of axial stypy ligands of 1 in solution allows us to exchange stypy ligands by dimethyl sulfoxide and simple pyridine analytes in a controllable way, which triggers colorimetric and magnetic responses.

How external perturbations affect the chemoselectivity of substrate activation by cytochrome P450 OleTJE

Cytochrome P450 enzymes are versatile biocatalysts found in most forms of life. Generally, the cytochrome P450s react with dioxygen and hence are haem-based mono-oxygenases; however, in specific isozymes, H2O2 rather than O2 is used and these P450s act as peroxygenases. The P450 OleTJE is a peroxygenase that binds long to medium chain fatty acids and converts them to a range of products originating from Cα-hydroxylation, Cβ-hydroxylation, Cα-Cβ desaturation and decarboxylation of the substrate. There is still controversy regarding the details of the reaction mechanism of P450 OleTJE; how the products are formed and whether the product distributions can be influenced by external perturbations. To gain further insights into the structure and reactivity of P450 OleTJE, we set up a range of large active site model complexes as well as full enzymatic structures and did a combination of density functional theory studies and quantum mechanics/molecular mechanics calculations. In particular, the work focused on the mechanisms leading to these products under various reaction conditions. Thus, for a small cluster model, we find a highly selective Cα-hydroxylation pathway that is preferred over Cβ-H hydrogen atom abstraction by at least 10 kcal mol-1. Introduction of polar residues to the model, such as an active site protonated histidine residue or through external electric field effects, lowers the Cβ-H hydrogen atom abstraction barriers are lowered, while a full QM/MM model brings the Cα-H and Cβ-H hydrogen atom abstraction barriers within 1 kcal mol-1. Our studies; therefore, implicate that environmental effects in the second-coordination sphere can direct and guide selectivities in enzymatic reaction mechanisms.

The pH-Induced Selectivity Between Cysteine or Histidine Coordinated Heme in an Artificial α-Helical Metalloprotein

De Novo metalloprotein design assesses the relationship between metal active site architecture and catalytic reactivity. Herein, we use an α-helical scaffold to control the iron coordination geometry when a heme cofactor is allowed to bind to either histidine or cysteine ligands, within a single artificial protein. Consequently, we uncovered a reversible pH-induced switch of the heme axial ligation within this simplified scaffold. Characterization of the specific heme coordination modes was done by using UV/Vis and Electron Paramagnetic Resonance spectroscopies. The penta- or hexa-coordinate thiolate heme (9≤pH≤11) and the penta-coordinate imidazole heme (6≤pH≤8.5) reproduces well the heme ligation in chloroperoxidases or cyt P450 monooxygenases and peroxidases, respectively. The stability of heme coordination upon ferric/ferrous redox cycling is a crucial property of the construct. At basic pHs, the thiolate mini-heme protein can catalyze O₂ reduction when adsorbed onto a pyrolytic graphite electrode.

Formally Ferric Heme Carbon Monoxide Adduct

Formally ferric carbonyl adducts are reported in a series of thiolate-bound iron porphyrins. Resonance Raman data indicate the presence of both Fe-S and Fe-CO bonds, and EPR data of this S = 1/2 species indicate a ligand-based electron hole, giving this complex an Fe(II)-thiyl radical electronic ground state. The FTIR data show that the C-O vibrations are substantially higher than in the corresponding ferrous-thiolate CO adducts. DFT calculations reproduce the spectroscopic features and indicate that backbonding to the low lying π* orbitals of the bound CO stabilizes the Fe 3d orbitals resulting in a stabilization of the ferrous-thiyl radical ground state compared to the five-coordinate ferric-thiolate precursor complexes. Access to stable thiyl radicals will help understand these elusive species that are mostly encountered as short-lived reactive reaction intermediates.

Synthetic Model Complex of the Key Intermediate in Cytochrome P450 Nitric Oxide Reductase

Fungal denitrification plays a crucial role in the nitrogen cycle and contributes to the total N₂O emission from agricultural soils. Here, cytochrome P450 NO reductase (P450nor) reduces two NO to N₂O using a single heme site. Despite much research, the exact nature of the critical "Intermediate I" responsible for the key N-N coupling step in P450nor is unknown. This species likely corresponds to a Fe-NHOH-type intermediate with an unknown electronic structure. Here we report a new strategy to generate a model system for this intermediate, starting from the iron(III) methylhydroxylamide complex [Fe(3,5-Me-BAFP)(NHOMe)] (1), which was fully characterized by ¹H NMR, UV-vis, electron paramagnetic resonance, and vibrational spectroscopy (rRaman and NRVS). Our data show that 1 is a high-spin ferric complex with an N-bound hydroxylamide ligand that is strongly coordinated (Fe-N distance, 1.918 Å; Fe-NHOMe stretch, 558 cm^-1). Simple one-electron oxidation of 1 at -80 °C then cleanly generates the first model system for Intermediate I, [Fe(3,5-Me-BAFP)(NHOMe)]⁺ (1⁺). UV-vis, resonance Raman, and Mössbauer spectroscopies, in comparison to the chloro analogue [Fe(3,5-Me-BAFP)(Cl)]⁺, demonstrate that 1⁺ is best described as an Fe^III-(NHOMe)^• complex with a bound NHOMe radical. Further reactivity studies show that 1⁺ is highly reactive toward NO, a reaction that likely proceeds via N-N bond formation, following a radical-radical-type coupling mechanism. Our results therefore provide experimental evidence, for the first time, that an Fe^III-(NHOMe)^• electronic structure is indeed a reasonable electronic description for Intermediate I and that this electronic structure is advantageous for P450nor catalysis because it can greatly facilitate N-N bond formation and, ultimately, N₂O generation.

Faraday cage screening reveals intrinsic aspects of the van der Waals attraction

General properties of the recently observed screening of the van der Waals (vdW) attraction between a silica substrate and silica tip by insertion of graphene are predicted using basic theory and first-principles calculations. Results are then focused on possible practical applications, as well as an understanding of the nature of vdW attraction, considering recent discoveries showing it competing against covalent and ionic bonding. The traditional view of the vdW attraction as arising from pairwise-additive London dispersion forces is considered using Grimme's "D3" method, comparing results to those from Tkatchenko's more general many-body dispersion (MBD) approach, all interpreted in terms of Dobson's general dispersion framework. Encompassing the experimental results, MBD screening of the vdW force between two silica bilayers is shown to scale up to medium separations as 1.25 de/d, where d is the bilayer separation and de is its equilibrium value, depicting antiscreening approaching and inside de Means of unifying this correlation effect with those included in modern density functionals are urgently required.

van der Waals forces control ferroelectric-antiferroelectric ordering in CuInP2S6 and CuBiP2Se6 laminar materials

We show how van der Waals (vdW) forces outcompete covalent and ionic forces to control ferroelectric ordering in CuInP2S6 nanoflakes as well as in CuInP2S6 and CuBiP2Se6 crystals. While the self-assembly of these 2D layered materials is clearly controlled by vdW effects, this result indicates that the internal layer structure is also similarly controlled. Using up to 14 first-principles computational methods, we predict that the bilayers of both materials should be antiferroelectric. However, antiferroelectric nanoflakes and bulk materials are shown to embody two fundamentally different types of inter-layer interactions, with vdW forces strongly favouring one and strongly disfavouring the other compared to ferroelectric ordering. Strong specific vdW interactions involving the Cu atoms control this effect. Thickness-dependent significant cancellation of these two large opposing vdW contributions results in a small net effect that interacts with weak ionic contributions to control ferroelectric ordering.

Ferric Heme-Nitrosyl Complexes: Kinetically Robust or Unstable Intermediates?

We have determined a convenient method for the bulk synthesis of high-purity ferric heme-nitrosyl complexes ({FeNO}⁶ in the Enemark-Feltham notation); this method is based on the chemical or electrochemical oxidation of corresponding {FeNO}⁷ precursors. We used this method to obtain the five- and six-coordinate complexes [Fe(TPP)(NO)]⁺ (TPP^2- = tetraphenylporphyrin dianion) and [Fe(TPP)(NO)(MI)]⁺ (MI = 1-methylimidazole) and demonstrate that these complexes are stable in solution in the absence of excess NO gas. This is in stark contrast to the often-cited instability of such {FeNO}⁶ model complexes in the literature, which is likely due to the common presence of halide impurities (although other impurities could certainly also play a role). This is avoided in our approach for the synthesis of {FeNO}⁶ complexes via oxidation of pure {FeNO}⁷ precursors. On the basis of these results, {FeNO}⁶ complexes in proteins do not show an increased stability toward NO loss compared to model complexes. We also prepared the halide-coordinated complexes [Fe(TPP)(NO)(X)] (X = Cl^-, Br^-), which correspond to the elusive, key reactive intermediate in the so-called autoreduction reaction, which is frequently used to prepare {FeNO}⁷ complexes from ferric precursors. All of the complexes were characterized using X-ray crystallography, UV-vis, IR, and nuclear resonance vibrational spectroscopy (NRVS). On the basis of the vibrational data, further insight into the electronic structure of these {FeNO}⁶ complexes, in particular with respect to the role of the axial ligand trans to NO, is obtained.

Putting David Craig’s Legacy to Work in Nanotechnology and Biotechnology

David Craig (1919–2015) left us with a lasting legacy concerning basic understanding of chemical spectroscopy and bonding. This is expressed in terms of some of the recent achievements of my own research career, with a focus on integration of Craig’s theories with those of Noel Hush to solve fundamental problems in photosynthesis, molecular electronics (particularly in regard to the molecules synthesized by Maxwell Crossley), and self-assembled monolayer structure and function. Reviewed in particular is the relation of Craig’s legacy to: the 50-year struggle to assign the visible absorption spectrum of arguably the world’s most significant chromophore, chlorophyll; general theories for chemical bonding and structure extending Hush’s adiabatic theory of electron-transfer processes; inelastic electron-tunnelling spectroscopy (IETS); chemical quantum entanglement and the Penrose–Hameroff model for quantum consciousness; synthetic design strategies for NMR quantum computing; Gibbs free-energy measurements and calculations for formation and polymorphism of organic self-assembled monolayers on graphite surfaces from organic solution; and understanding the basic chemical processes involved in the formation of gold surfaces and nanoparticles protected by sulfur-bound ligands, ligands whose form is that of Au0-thiyl rather than its commonly believed AuI-thiolate tautomer.