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Ruiz-Agudo C, Cölfen H. Exploring the Potential of Nonclassical Crystallization Pathways to Advance Cementitious Materials. Chem Rev 2024; 124:7538-7618. [PMID: 38874016 PMCID: PMC11212030 DOI: 10.1021/acs.chemrev.3c00259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Revised: 05/31/2024] [Accepted: 06/03/2024] [Indexed: 06/15/2024]
Abstract
Understanding the crystallization of cement-binding phases, from basic units to macroscopic structures, can enhance cement performance, reduce clinker use, and lower CO2 emissions in the construction sector. This review examines the crystallization pathways of C-S-H (the main phase in PC cement) and other alternative binding phases, particularly as cement formulations evolve toward increasing SCMs and alternative binders as clinker replacements. We adopt a nonclassical crystallization perspective, which recognizes the existence of critical intermediate steps between ions in solution and the final crystalline phases, such as solute ion associates, dense liquid phases, amorphous intermediates, and nanoparticles. These multistep pathways uncover innovative strategies for controlling the crystallization of binding phases through additive use, potentially leading to highly optimized cement matrices. An outstanding example of additive-controlled crystallization in cementitious materials is the synthetically produced mesocrystalline C-S-H, renowned for its remarkable flexural strength. This highly ordered microstructure, which intercalates soft matter between inorganic and brittle C-S-H, was obtained by controlling the assembly of individual C-S-H subunits. While large-scale production of cementitious materials by a bottom-up self-assembly method is not yet feasible, the fundamental insights into the crystallization mechanism of cement binding phases presented here provide a foundation for developing advanced cement-based materials.
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Affiliation(s)
- Cristina Ruiz-Agudo
- Physical Chemistry, Department of Chemistry, University of Konstanz, Universitätsstr. 10, 78457 Konstanz, Germany
| | - Helmut Cölfen
- Physical Chemistry, Department of Chemistry, University of Konstanz, Universitätsstr. 10, 78457 Konstanz, Germany
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2
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Zhang W, Fan Y, Chi J. The synergistic effect of multiple organic macromolecules on the formation of calcium oxalate raphides of Musa spp. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:2470-2480. [PMID: 38243384 DOI: 10.1093/jxb/erae022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Accepted: 01/16/2024] [Indexed: 01/21/2024]
Abstract
Needle-like calcium oxalate crystals called raphides are unique structures in the plant kingdom. Multiple biomacromolecules work together in the regulatory and transportation pathways to form raphides; however, the mechanism by which this occurs remains unknown. Using banana (Musa spp.), this study combined in vivo methods including confocal microscopy, transmission electron microscopy, and Q Exactive mass spectrometry to identify the main biomolecules, such as vesicles, together with the compositions of lipids and proteins in the crystal chamber, which is the membrane compartment that surrounds each raphide during its formation. Simulations of the vesicle transportation process and the synthesis of elongated calcium oxalate crystals in vitro were then conducted, and the results suggested that the vesicles carrying amorphous calcium oxalate and proteins embedded in raphides are transported along actin filaments. These vesicles subsequently fuse with the crystal chamber, utilizing the proteins embedded in the raphides as a template for the final formation of the structure. Our findings contribute to the fundamental understanding of the regulation of the diverse biomacromolecules that are crucial for raphide formation. Moreover, the implications of these findings extend to other fields such as materials science, and particularly the synthesis of functionalized materials.
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Affiliation(s)
- Wenjun Zhang
- College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Yuke Fan
- College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Jialin Chi
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
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3
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Dubicka Z, Bojanowski MJ, Bijma J, Bickmeyer U. Mg-rich amorphous to Mg-low crystalline CaCO 3 pathway in foraminifera. Heliyon 2023; 9:e18331. [PMID: 37519760 PMCID: PMC10375801 DOI: 10.1016/j.heliyon.2023.e18331] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Revised: 07/13/2023] [Accepted: 07/13/2023] [Indexed: 08/01/2023] Open
Abstract
Calcium carbonate minerals produced by marine organisms play a central role in the global carbon cycle and carbonate sedimentation, which influence the climate by regulating atmospheric CO2 levels. Foraminifera are important marine single-celled organisms that have produced calcite shells for over 300 million years. Here, we present new observations promoting our understanding for foraminiferal biocalcification by studying Amphistegina lessonii. We integrated in vivo confocal autofluorescence and dye fluorescence imaging with elemental analysis of the cell supporting the concept that the calcite shells of foraminifera are produced via deposition of intracellularly formed Mg-rich amorphous calcium carbonate (Mg-ACC) particles that transform into a stable mineral phase. This process is likely accompanied by the activity of endosymbiotic microalgae and seawater-derived endocytic vesicles that provide calcification substrates such as DIC, Ca2+, and Mg2+. The final transformation of semi-liquid amorphous nanoparticles into a crystalline shell was associated with Mg2+ liberation.
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Affiliation(s)
- Zofia Dubicka
- Ecological Chemistry, Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung, Bremerhaven, 27-570, Germany
- University of Warsaw, Warsaw, 02-089, Poland
| | | | - Jelle Bijma
- Marine Biogeosciences, Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung, Bremerhaven, 27-570, Germany
| | - Ulf Bickmeyer
- Ecological Chemistry, Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung, Bremerhaven, 27-570, Germany
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4
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Zito F, Bonaventura R, Costa C, Russo R. Carbonic anhydrases in development: morphological observations and gene expression profiling in sea urchin embryos exposed to acetazolamide. Open Biol 2023; 13:220254. [PMID: 36597694 PMCID: PMC9811153 DOI: 10.1098/rsob.220254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Abstract
Carbonic anhydrases (CANs) are conserved metalloenzymes catalysing the reversible hydration of carbon dioxide into protons and bicarbonate, with important roles in cells physiology. Some CAN-coding genes were found in sea urchin genome, although only one involved in embryonic skeletogenesis was described in Paracentrotus lividus. Here, we investigated gene expression patterns of P. lividus embryos cultured in the presence of acetazolamide (AZ), a CAN inhibitor, to combine morphological defects with their molecular underpinning. CAN inhibition blocked skeletogenesis, affected the spatial/temporal expression of some biomineralization-related genes, inhibited embryos swimming. A comparative analysis on the expression of 127 genes in control and 3 h/24 h AZ-treated embryos, using NanoString technology, showed the differential expression of genes encoding for structural/regulatory proteins, with different embryonic roles: biomineralization, transcriptional regulation, signalling, development and defence response. The study of the differentially expressed genes and the signalling pathways affected, besides in silico analyses and a speculative 'interactomic model', leads to predicting the presence of various CAN isoforms, possibly involved in different physiological processes/activities in sea urchin embryo, and their potential target genes/proteins. Our findings provide new valuable molecular data for further studies in several biological fields: developmental biology (biomineralization, axes patterning), cell differentiation (neural development) and drug toxicology (AZ effects on embryos/tissues).
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Affiliation(s)
- Francesca Zito
- Istituto per la Ricerca e l'Innovazione Biomedica, Consiglio Nazionale delle Ricerche, via Ugo La Malfa 153, Palermo 90146, Italy
| | - Rosa Bonaventura
- Istituto per la Ricerca e l'Innovazione Biomedica, Consiglio Nazionale delle Ricerche, via Ugo La Malfa 153, Palermo 90146, Italy
| | - Caterina Costa
- Istituto per la Ricerca e l'Innovazione Biomedica, Consiglio Nazionale delle Ricerche, via Ugo La Malfa 153, Palermo 90146, Italy
| | - Roberta Russo
- Istituto per la Ricerca e l'Innovazione Biomedica, Consiglio Nazionale delle Ricerche, via Ugo La Malfa 153, Palermo 90146, Italy
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5
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Kahil K, Kaplan-Ashiri I, Wolf SG, Rechav K, Weiner S, Addadi L. Elemental compositions of sea urchin larval cell vesicles evaluated by cryo-STEM-EDS and cryo-SEM-EDS. Acta Biomater 2023; 155:482-490. [PMID: 36375785 DOI: 10.1016/j.actbio.2022.11.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Revised: 11/03/2022] [Accepted: 11/04/2022] [Indexed: 11/15/2022]
Abstract
During spicule formation in sea urchin larvae, calcium ions translocate within the primary mesenchymal cells (PMCs) from endocytosed seawater vacuoles to various organelles and vesicles where they accumulate, and subsequently precipitate. During this process, calcium ions are concentrated by more than three orders of magnitude, while other abundant ions (Na, Mg) must be removed. To obtain information about the overall ion composition in the vesicles, we used quantitative cryo-SEM-EDS and cryo-STEM-EDS analyzes. For cryo-STEM-EDS, thin (500 nm) frozen hydrated lamellae of PMCs were fabricated using cryo-focused ion beam-SEM. The lamellae were then loaded into a cryo-TEM, imaged and the ion composition of electron dense bodies was measured. Analyzes performed on 18 Ca-rich particles/particle clusters from 6 cells contained Ca, Na, Mg, S and P in different ratios. Surprisingly, all the Ca-rich particles contained P in amounts up to almost 1:1 of Ca. These cryo-STEM-EDS results were qualitatively confirmed by cryo-SEM-EDS analyzes of 310 vesicles, performed on high pressure frozen and cryo-planed samples. We discuss the advantages and limitations of the two techniques, and their potential applicability, especially to study ion transport pathways and ion trafficking in cells involved in mineralization. STATEMENT OF SIGNIFICANCE: The 'inorganic side of life', encompassing ion trafficking and ion storage in soft tissues of organisms, is a generally overlooked problem. Addressing such a problem becomes possible through the application of innovative techniques, performed in cryogenic conditions, which preserve the tissues in quasi-physiological state. We developed here a set of analytical tools, cryo-SEM-EDS, and cryo-STEM-EDS, which allow reconstructing the ion composition inside vesicles in sea urchin larval cells, on their way to deposit mineral in the skeletons. The techniques are complex, and we evaluate here the advantages and disadvantages of each technique. The methodologies that we are developing here can be applied to other cells and other pathways as well, eventually leading to quantitative elemental analyzes of tissues under cryogenic conditions.
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Affiliation(s)
- Keren Kahil
- Department of Chemical and Structural Biology, Weizmann Institute of Science, Rehovot 7610001, Israel
| | - Ifat Kaplan-Ashiri
- Department of Chemical Research Support, Weizmann Institute, Rehovot 7610001, Israel
| | - Sharon G Wolf
- Department of Chemical Research Support, Weizmann Institute, Rehovot 7610001, Israel
| | - Katya Rechav
- Department of Chemical Research Support, Weizmann Institute, Rehovot 7610001, Israel
| | - Steve Weiner
- Department of Chemical and Structural Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.
| | - Lia Addadi
- Department of Chemical and Structural Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.
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6
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Extracellular carbonic anhydrase activity promotes a carbon concentration mechanism in metazoan calcifying cells. Proc Natl Acad Sci U S A 2022; 119:e2203904119. [PMID: 36161891 DOI: 10.1073/pnas.2203904119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Many calcifying organisms utilize metabolic CO2 to generate CaCO3 minerals to harden their shells and skeletons. Carbonic anhydrases are evolutionary ancient enzymes that have been proposed to play a key role in the calcification process, with the underlying mechanisms being little understood. Here, we used the calcifying primary mesenchyme cells (PMCs) of sea urchin larva to study the role of cytosolic (iCAs) and extracellular carbonic anhydrases (eCAs) in the cellular carbon concentration mechanism (CCM). Molecular analyses identified iCAs and eCAs in PMCs and highlight the prominent expression of a glycosylphosphatidylinositol-anchored membrane-bound CA (Cara7). Intracellular pH recordings in combination with CO2 pulse experiments demonstrated iCA activity in PMCs. iCA activity measurements, together with pharmacological approaches, revealed an opposing contribution of iCAs and eCAs on the CCM. H+-selective electrodes were used to demonstrate eCA-catalyzed CO2 hydration rates at the cell surface. Knockdown of Cara7 reduced extracellular CO2 hydration rates accompanied by impaired formation of specific skeletal segments. Finally, reduced pHi regulatory capacities during inhibition and knockdown of Cara7 underscore a role of this eCA in cellular HCO3- uptake. This work reveals the function of CAs in the cellular CCM of a marine calcifying animal. Extracellular hydration of metabolic CO2 by Cara7 coupled to HCO3- uptake mechanisms mitigates the loss of carbon and reduces the cellular proton load during the mineralization process. The findings of this work provide insights into the cellular mechanisms of an ancient biological process that is capable of utilizing CO2 to generate a versatile construction material.
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7
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Hydrocoel morphogenesis forming the pentaradial body plan in a sea cucumber, Apostichopus japonicus. Sci Rep 2022; 12:6025. [PMID: 35410352 PMCID: PMC9001670 DOI: 10.1038/s41598-022-09691-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Accepted: 03/24/2022] [Indexed: 11/09/2022] Open
Abstract
Echinoderms constitute an animal phylum characterized by the pentaradial body plan. During the development from bilateral larvae to pentaradial adults, the formation of the multiple of five hydrocoel lobes, i.e., the buddings from the mesodermal coelom, is the firstly emerging pentameral character. The developmental mechanism underlying the hydrocoel-lobe formation should be revealed to understand the evolutionary process of this unique and highly derived body plan of echinoderms, although the morphogenetic mechanisms of hydrocoel lobes are largely uninvestigated. In this study, using the sea cucumber Apostichopus japonicus, in which hydrocoel is easily observable, the developmental process of hydrocoel lobes was described in detail, focusing on cell proliferation and rearrangement. Cell proliferation was not specifically distributed in the growing tips of the hydrocoel lobes, and inhibition of cell proliferation did not affect lobe formation. During lobe formation, the epithelium of the hydrocoel lobes was firstly thickened and then transformed into a simple epithelium, suggesting that tissue expansion via tissue remodeling contributes to the hydrocoel-lobe formation.
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8
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Tarsis K, Gildor T, Morgulis M, Ben-Tabou de-Leon S. Distinct regulatory states control the elongation of individual skeletal rods in the sea urchin embryo. Dev Dyn 2022; 251:1322-1339. [PMID: 35403290 PMCID: PMC9543741 DOI: 10.1002/dvdy.474] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2022] [Revised: 03/28/2022] [Accepted: 04/06/2022] [Indexed: 11/09/2022] Open
Abstract
Background Understanding how gene regulatory networks (GRNs) control developmental progression is a key to the mechanistic understanding of morphogenesis. The sea urchin larval skeletogenesis provides an excellent platform to tackle this question. In the early stages of sea urchin skeletogenesis, skeletogenic genes are uniformly expressed in the skeletogenic lineage. Yet, during skeletal elongation, skeletogenic genes are expressed in distinct spatial sub‐domains. The regulation of differential gene expression during late skeletogenesis is not well understood. Results Here we reveal the dynamic expression of the skeletogenic regulatory genes that define a specific regulatory state for each pair of skeletal rods, in the sea urchin Paracentrotus lividus. The vascular endothelial growth factor (VEGF) signaling, essential for skeleton formation, specifically controls the migration of cells that form the postoral and distal anterolateral skeletogenic rods. VEGF signaling also controls the expression of regulatory genes in cells at the tips of the postoral rods, including the transcription factors Pitx1 and MyoD1. Pitx1 activity is required for normal skeletal elongation and for the expression of some of VEGF target genes. Conclusions Our study illuminates the fine‐tuning of the regulatory system during the transition from early to late skeletogenesis that gives rise to rod‐specific regulatory states. The skeletogenic transcription factors form specific regulatory states in various skeletogenic sub‐populations. Late VEGF signaling controls the regulatory states at the tips of the post‐oral and anterolateral skeletal rods. VEGF signaling controls the expression of the transcription factors, MyoD1 and Pitx1. Pitx1 activity is required for normal skeletal elongation and for the expression of some of VEGF target genes.
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Affiliation(s)
- Kristina Tarsis
- Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel
| | - Tsvia Gildor
- Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel
| | - Miri Morgulis
- Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel
| | - Smadar Ben-Tabou de-Leon
- Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel
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9
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Gilbert PUPA, Bergmann KD, Boekelheide N, Tambutté S, Mass T, Marin F, Adkins JF, Erez J, Gilbert B, Knutson V, Cantine M, Hernández JO, Knoll AH. Biomineralization: Integrating mechanism and evolutionary history. SCIENCE ADVANCES 2022; 8:eabl9653. [PMID: 35263127 PMCID: PMC8906573 DOI: 10.1126/sciadv.abl9653] [Citation(s) in RCA: 53] [Impact Index Per Article: 26.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Calcium carbonate (CaCO3) biomineralizing organisms have played major roles in the history of life and the global carbon cycle during the past 541 Ma. Both marine diversification and mass extinctions reflect physiological responses to environmental changes through time. An integrated understanding of carbonate biomineralization is necessary to illuminate this evolutionary record and to understand how modern organisms will respond to 21st century global change. Biomineralization evolved independently but convergently across phyla, suggesting a unity of mechanism that transcends biological differences. In this review, we combine CaCO3 skeleton formation mechanisms with constraints from evolutionary history, omics, and a meta-analysis of isotopic data to develop a plausible model for CaCO3 biomineralization applicable to all phyla. The model provides a framework for understanding the environmental sensitivity of marine calcifiers, past mass extinctions, and resilience in 21st century acidifying oceans. Thus, it frames questions about the past, present, and future of CaCO3 biomineralizing organisms.
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Affiliation(s)
- Pupa U. P. A. Gilbert
- Departments of Physics, Chemistry, Geoscience, and Materials Science, University of Wisconsin-Madison, Madison, WI 53706, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Corresponding author. (P.U.P.A.G.); (A.H.K.)
| | - Kristin D. Bergmann
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Nicholas Boekelheide
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Sylvie Tambutté
- Centre Scientifique de Monaco, Department of Marine Biology, 98000 Monaco, Principality of Monaco
| | - Tali Mass
- University of Haifa, Marine Biology Department, Mt. Carmel, Haifa 31905, Israel
| | - Frédéric Marin
- Université de Bourgogne–Franche-Comté (UBFC), Laboratoire Biogéosciences, UMR CNRS 6282, Bâtiment des Sciences Gabriel, 21000 Dijon, France
| | - Jess F. Adkins
- Geological and Planetary Sciences, California Institute of Technology, MS 100-23, Pasadena, CA 91125, USA
| | - Jonathan Erez
- The Hebrew University of Jerusalem, Institute of Earth Sciences, Jerusalem 91904, Israel
| | - Benjamin Gilbert
- Energy Geoscience Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Department of Earth and Planetary Science, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Vanessa Knutson
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
| | - Marjorie Cantine
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
- Goethe-Universität Frankfurt, 60438 Frankfurt am Main, Germany
| | - Javier Ortega Hernández
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
| | - Andrew H. Knoll
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
- Corresponding author. (P.U.P.A.G.); (A.H.K.)
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10
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The Evolution of Biomineralization through the Co-Option of Organic Scaffold Forming Networks. Cells 2022; 11:cells11040595. [PMID: 35203246 PMCID: PMC8870065 DOI: 10.3390/cells11040595] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2022] [Revised: 02/07/2022] [Accepted: 02/08/2022] [Indexed: 12/05/2022] Open
Abstract
Biomineralization is the process in which organisms use minerals to generate hard structures like teeth, skeletons and shells. Biomineralization is proposed to have evolved independently in different phyla through the co-option of pre-existing developmental programs. Comparing the gene regulatory networks (GRNs) that drive biomineralization in different species could illuminate the molecular evolution of biomineralization. Skeletogenesis in the sea urchin embryo was extensively studied and the underlying GRN shows high conservation within echinoderms, larval and adult skeletogenesis. The organic scaffold in which the calcite skeletal elements form in echinoderms is a tubular compartment generated by the syncytial skeletogenic cells. This is strictly different than the organic cartilaginous scaffold that vertebrates mineralize with hydroxyapatite to make their bones. Here I compare the GRNs that drive biomineralization and tubulogenesis in echinoderms and in vertebrates. The GRN that drives skeletogenesis in the sea urchin embryo shows little similarity to the GRN that drives bone formation and high resemblance to the GRN that drives vertebrates’ vascular tubulogenesis. On the other hand, vertebrates’ bone-GRNs show high similarity to the GRNs that operate in the cells that generate the cartilage-like tissues of basal chordate and invertebrates that do not produce mineralized tissue. These comparisons suggest that biomineralization in deuterostomes evolved through the phylum specific co-option of GRNs that control distinct organic scaffolds to mineralization.
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11
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Huang J, Li L, Jiang T, Xie L, Zhang R. Mantle tissue in the pearl oyster Pinctada fucata secretes immune components via vesicle transportation. FISH & SHELLFISH IMMUNOLOGY 2022; 121:116-123. [PMID: 34995768 DOI: 10.1016/j.fsi.2022.01.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2021] [Revised: 12/19/2021] [Accepted: 01/02/2022] [Indexed: 06/14/2023]
Abstract
Molluscan bivalves secrete shell matrices into the extrapallial space (EPS) to guide the precipitation of rigid shells. Meanwhile, immune components are present in the EPS and shell matrices, which are pivotal in resistant to invaded pathogens, thus ensuring the shell formation process. However, the origin of these components remains unclear. In this study, we revealed numerous vesicles were secreted from the outer mantle epithelial cells by using light and electron microscopes. The secreted vesicles were isolated by gradient centrifugation and confirmed by transmission electron microscopy. Proteomics analysis showed that the secreted vesicles were composed of cytoplasmic and immune components, most of which do not have signal peptides, indicating that they were secreted by a non-classical pathway. Moreover, real-time PCR revealed that some immune components were highly expressed in the mantle tissue, compared to the hemocytes. FTIR analysis verified the presence of lipids in the shell matrices, indicating that the vesicles have integrated into the shell layers. Taken together, our results suggested that mantle epithelial cells secreted some important immune components into the EPS via secreted vesicle transportation, thus cooperating with the hemocytes to play a vital role in immunity during shell formation.
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Affiliation(s)
- Jingliang Huang
- MOE Key Laboratory of Protein Sciences, School of Life Sciences, Tsinghua University, Beijing, 100084, China
| | - Li Li
- MOE Key Laboratory of Protein Sciences, School of Life Sciences, Tsinghua University, Beijing, 100084, China
| | - Taifeng Jiang
- MOE Key Laboratory of Protein Sciences, School of Life Sciences, Tsinghua University, Beijing, 100084, China
| | - Liping Xie
- MOE Key Laboratory of Protein Sciences, School of Life Sciences, Tsinghua University, Beijing, 100084, China
| | - Rongqing Zhang
- MOE Key Laboratory of Protein Sciences, School of Life Sciences, Tsinghua University, Beijing, 100084, China; Department of Biotechnology and Biomedicine, Yangtze Delta Region Institute of Tsinghua University, Jiaxing, 314000, China.
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12
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Kahil K, Weiner S, Addadi L, Gal A. Ion Pathways in Biomineralization: Perspectives on Uptake, Transport, and Deposition of Calcium, Carbonate, and Phosphate. J Am Chem Soc 2021; 143:21100-21112. [PMID: 34881565 PMCID: PMC8704196 DOI: 10.1021/jacs.1c09174] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Indexed: 12/19/2022]
Abstract
Minerals are formed by organisms in all of the kingdoms of life. Mineral formation pathways all involve uptake of ions from the environment, transport of ions by cells, sometimes temporary storage, and ultimately deposition in or outside of the cells. Even though the details of how all this is achieved vary enormously, all pathways need to respect both the chemical limitations of ion manipulation, as well as the many "housekeeping" roles of ions in cell functioning. Here we provide a chemical perspective on the biological pathways of biomineralization. Our approach is to compare and contrast the ion pathways involving calcium, phosphate, and carbonate in three very different organisms: the enormously abundant unicellular marine coccolithophores, the well investigated sea urchin larval model for single crystal formation, and the complex pathways used by vertebrates to form their bones. The comparison highlights both common and unique processes. Significantly, phosphate is involved in regulating calcium carbonate deposition and carbonate is involved in regulating calcium phosphate deposition. One often overlooked commonality is that, from uptake to deposition, the solutions involved are usually supersaturated. This therefore requires not only avoiding mineral deposition where it is not needed but also exploiting this saturated state to produce unstable mineral precursors that can be conveniently stored, redissolved, and manipulated into diverse shapes and upon deposition transformed into more ordered and hence often functional final deposits.
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Affiliation(s)
- Keren Kahil
- Department
of Chemical and Structural Biology and Department of Plant and Environmental
Sciences, Weizmann Institute of Science, 7610001 Rehovot, Israel
| | - Steve Weiner
- Department
of Chemical and Structural Biology and Department of Plant and Environmental
Sciences, Weizmann Institute of Science, 7610001 Rehovot, Israel
| | - Lia Addadi
- Department
of Chemical and Structural Biology and Department of Plant and Environmental
Sciences, Weizmann Institute of Science, 7610001 Rehovot, Israel
| | - Assaf Gal
- Department
of Chemical and Structural Biology and Department of Plant and Environmental
Sciences, Weizmann Institute of Science, 7610001 Rehovot, Israel
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13
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Gildor T, Winter MR, Layous M, Hijaze E, Ben-Tabou de-Leon S. The biological regulation of sea urchin larval skeletogenesis - From genes to biomineralized tissue. J Struct Biol 2021; 213:107797. [PMID: 34530133 DOI: 10.1016/j.jsb.2021.107797] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2021] [Revised: 09/02/2021] [Accepted: 09/07/2021] [Indexed: 10/20/2022]
Abstract
Biomineralization is the process in which soft organic tissues use minerals to produce shells, skeletons and teeth for various functions such as protection and physical support. The ability of the cells to control the time and place of crystal nucleation as well as crystal orientation and stiffness is far beyond the state-of-the art of human technologies. Thus, understanding the biological control of biomineralization will promote our understanding of embryo development as well as provide novel approaches for material engineering. Sea urchin larval skeletogenesis offers an excellent platform for functional analyses of both the molecular control system and mineral uptake and deposition. Here we describe the current understanding of the genetic, molecular and cellular processes that underlie sea urchin larval skeletogenesis. We portray the regulatory genes that define the specification of the skeletogenic cells and drive the various morphogenetic processes that occur in the skeletogenic lineage, including: epithelial to mesenchymal transition, cell migration, spicule cavity formation and mineral deposition into the spicule cavity. We describe recent characterizations of the size, motion and mineral concentration of the calcium-bearing vesicles in the skeletogenic cells. We review the distinct specification states within the skeletogenic lineage that drive localized skeletal growth at the tips of the spicules. Finally, we discuss the surprising similarity between the regulatory network and cellular processes that drive sea urchin skeletogenesis and those that control vertebrate vascularization. Overall, we illustrate the novel insights on the biological regulation and evolution of biomineralization, gained from studies of the sea urchin larval skeletogenesis.
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Affiliation(s)
- Tsvia Gildor
- Marine Biology Department, Charney School of Marine Sciences, the University of Haifa, Haifa, Israel
| | - Mark R Winter
- Marine Biology Department, Charney School of Marine Sciences, the University of Haifa, Haifa, Israel
| | - Majed Layous
- Marine Biology Department, Charney School of Marine Sciences, the University of Haifa, Haifa, Israel
| | - Eman Hijaze
- Marine Biology Department, Charney School of Marine Sciences, the University of Haifa, Haifa, Israel
| | - Smadar Ben-Tabou de-Leon
- Marine Biology Department, Charney School of Marine Sciences, the University of Haifa, Haifa, Israel.
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14
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Scher N, Rechav K, Paul-Gilloteaux P, Avinoam O. In situ fiducial markers for 3D correlative cryo-fluorescence and FIB-SEM imaging. iScience 2021; 24:102714. [PMID: 34258551 PMCID: PMC8253967 DOI: 10.1016/j.isci.2021.102714] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Revised: 05/12/2021] [Accepted: 06/08/2021] [Indexed: 11/26/2022] Open
Abstract
Imaging of cells and tissues has improved significantly over the last decade. Dual-beam instruments with a focused ion beam mounted on a scanning electron microscope (FIB-SEM), offering high-resolution 3D imaging of large volumes and fields-of-view are becoming widely used in the life sciences. FIB-SEM has most recently been implemented on fully hydrated, cryo-immobilized, biological samples. Correlative light and electron microscopy workflows combining fluorescence microscopy (FM) with FIB-SEM imaging exist, whereas workflows combining cryo-FM and cryo-FIB-SEM imaging are not yet commonly available. Here, we demonstrate that fluorescently labeled lipid droplets can serve as in situ fiducial markers for correlating cryo-FM and FIB-SEM datasets and that this approach can be used to target the acquisition of large FIB-SEM stacks spanning tens of microns under cryogenic conditions. We also show that cryo-FIB-SEM imaging is particularly informative for questions related to organelle structure and inter-organellar contacts, nuclear organization, and mineral deposits in cells.
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Affiliation(s)
- Nadav Scher
- Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Katya Rechav
- Department of Chemical Research Support, Weizmann Institute of Science, Rehovot, Israel
| | - Perrine Paul-Gilloteaux
- Structure Fédérative de Recherche François Bonamy, INSERM, CNRS, Université de Nantes, Nantes, France
| | - Ori Avinoam
- Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel
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15
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Peled-Zehavi H, Gal A. Exploring Intracellular Ion Pools in Coccolithophores Using Live-Cell Imaging. Adv Biol (Weinh) 2021; 5:e2000296. [PMID: 33852773 DOI: 10.1002/adbi.202000296] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Revised: 02/08/2021] [Indexed: 11/06/2022]
Abstract
Some microorganisms, such as coccolithophores, produce an intricate exoskeleton made of inorganic solids. Coccoliths, the calcium carbonate scales of coccolithophores, are examples of the precise bioproduction of such complex 3D structures. However, the understanding of the cellular mechanisms that control mineral formation inside the cell, specifically the ability of these microalgae to transport high fluxes of inorganic building blocks, is still limited. Recently, using cryo-electron and X-ray microscopy, several intracellular compartments are shown to store high concentrations of calcium and phosphorous and are suggested to have a dominant role in the intracellular mineralization pathway. Here, live-cell confocal microscopy and fluorescent markers are used to examine the dynamics of ion stores in coccolithophores. Using calcein and 4',6-diamidino-2-phenylindole (DAPI) as fluorescent proxies for calcium and polyphosphates, the experiments reveal an unexpected plethora of organelles with distinct fluorescent signatures over a wide range of strains and conditions. Surprisingly, the fluorescent labeling does not show changes along the calcification process and is similar between calcifying and noncalcifying cells, suggesting that these ion pools may not be a dynamic avenue for calcium transport. In such a case, the enigma behind the ability of coccolithophores to sustain intracellular calcification still awaits comprehensive elucidation.
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Affiliation(s)
- Hadas Peled-Zehavi
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, 76100, Israel
| | - Assaf Gal
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, 76100, Israel
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16
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Winter MR, Morgulis M, Gildor T, Cohen AR, Ben-Tabou de-Leon S. Calcium-vesicles perform active diffusion in the sea urchin embryo during larval biomineralization. PLoS Comput Biol 2021; 17:e1008780. [PMID: 33617532 PMCID: PMC7932551 DOI: 10.1371/journal.pcbi.1008780] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Revised: 03/04/2021] [Accepted: 02/08/2021] [Indexed: 11/18/2022] Open
Abstract
Biomineralization is the process by which organisms use minerals to harden their tissues and provide them with physical support. Biomineralizing cells concentrate the mineral in vesicles that they secret into a dedicated compartment where crystallization occurs. The dynamics of vesicle motion and the molecular mechanisms that control it, are not well understood. Sea urchin larval skeletogenesis provides an excellent platform for investigating the kinetics of mineral-bearing vesicles. Here we used lattice light-sheet microscopy to study the three-dimensional (3D) dynamics of calcium-bearing vesicles in the cells of normal sea urchin embryos and of embryos where skeletogenesis is blocked through the inhibition of Vascular Endothelial Growth Factor Receptor (VEGFR). We developed computational tools for displaying 3D-volumetric movies and for automatically quantifying vesicle dynamics. Our findings imply that calcium vesicles perform an active diffusion motion in both, calcifying (skeletogenic) and non-calcifying (ectodermal) cells of the embryo. The diffusion coefficient and vesicle speed are larger in the mesenchymal skeletogenic cells compared to the epithelial ectodermal cells. These differences are possibly due to the distinct mechanical properties of the two tissues, demonstrated by the enhanced f-actin accumulation and myosinII activity in the ectodermal cells compared to the skeletogenic cells. Vesicle motion is not directed toward the biomineralization compartment, but the vesicles slow down when they approach it, and probably bind for mineral deposition. VEGFR inhibition leads to an increase of vesicle volume but hardly changes vesicle kinetics and doesn’t affect f-actin accumulation and myosinII activity. Thus, calcium vesicles perform an active diffusion motion in the cells of the sea urchin embryo, with diffusion length and speed that inversely correlate with the strength of the actomyosin network. Overall, our studies provide an unprecedented view of calcium vesicle 3D-dynamics and point toward cytoskeleton remodeling as an important effector of the motion of mineral-bearing vesicles. Biomineralization is a widespread, fundamental process by which organisms use minerals to harden their tissues. Mineral-bearing vesicles were observed in biomineralizing cells and play an essential role in biomineralization, yet little is known about their three-dimensional (3D) dynamics. Here we quantify 3D-vesicle-dynamics during calcite skeleton formation in sea urchin larvae, using lattice-light-sheet microscopy. We discover that calcium vesicles perform a diffusive motion in both calcifying and non-calcifying cells of the embryo. The diffusion coefficient and vesicle speed are higher in the mesenchymal skeletogenic cells compared to the epithelial ectodermal cells. This difference is possibly due to the higher rigidity of the ectodermal cells as demonstrated by the enhanced signal of f-actin and myosinII activity in these cells compared to the skeletogenic cells. The motion of the vesicles in the skeletogenic cells, is not directed toward the biomineralization compartment but the vesicles slow down near it, possibly to deposit their content. Blocking skeletogenesis through the inhibition of Vascular Endothelial Growth Factor Receptor (VEGFR), increases vesicle volume but doesn’t change the diffusion mode and the cytoskeleton markers in the cells. Our studies reveal the active diffusive motion of mineral bearing vesicles that is apparently defined by the mechanical properties of the cells.
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Affiliation(s)
- Mark R. Winter
- Marine Biology Department, Charney School of Marine Sciences, the University of Haifa, Haifa, Israel
- * E-mail: (MRW); (SBD)
| | - Miri Morgulis
- Marine Biology Department, Charney School of Marine Sciences, the University of Haifa, Haifa, Israel
| | - Tsvia Gildor
- Marine Biology Department, Charney School of Marine Sciences, the University of Haifa, Haifa, Israel
| | - Andrew R. Cohen
- Dept of Electrical Engineering, Drexel University, Pennsylvania, United States of America
| | - Smadar Ben-Tabou de-Leon
- Marine Biology Department, Charney School of Marine Sciences, the University of Haifa, Haifa, Israel
- * E-mail: (MRW); (SBD)
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17
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Morgulis M, Winter MR, Shternhell L, Gildor T, Ben-Tabou de-Leon S. VEGF signaling activates the matrix metalloproteinases, MmpL7 and MmpL5 at the sites of active skeletal growth and MmpL7 regulates skeletal elongation. Dev Biol 2021; 473:80-89. [PMID: 33577829 DOI: 10.1016/j.ydbio.2021.01.013] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2020] [Revised: 01/26/2021] [Accepted: 01/27/2021] [Indexed: 12/20/2022]
Abstract
Organisms can uptake minerals, shape them in different forms and generate teeth, skeletons or shells that support and protect them. Mineral uptake, trafficking and nucleation are tightly regulated by the biomineralizing cells through networks of specialized proteins. Specifically, matrix metalloproteases (MMPs) digest various extracellular substrates and allow for mineralization in the vertebrates' teeth and bones, but little is known about their role in invertebrates' systems. The sea urchin embryo provides an excellent invertebrate model for genetic and molecular studies of biomineralization. MMP inhibition prevents the growth of the calcite spicules of the sea urchin larval skeleton, however, the molecular mechanisms and genes that underlie this response are not well understood. Here we study the spatial expression and regulation of two membrane type MMPs that were found to be occluded in the sea urchin spicules, Pl-MmpL7 and Pl-MmpL5, and investigate the function of Pl-MmpL7 in skeletogenesis. The inhibition of MMPs does not change the volume of the calcium vesicles in the skeletogenic cells. The expression of Pl-MmpL7 and Pl-MmpL5 is regulated by the Vascular Endothelial Growth Factor (VEGF) signaling, from the time of skeleton initiation and on. The expression of these genes is localized to the subsets of skeletogenic cells where active spicule growth occurs throughout skeletogenesis. Downregulation of Pl-MmpL7 expression delays the growth of the skeletal rods and in some cases, strongly perturbs skeletal shape. The localized expression of Pl-MmpL7 and Pl-MmpL5 to the active growth zone and the effect of Pl-MmpL7 perturbations on skeletal growth, suggest that these genes are essential for normal spicule elongation in the sea urchin embryo.
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Affiliation(s)
- Miri Morgulis
- Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, 31905, Israel
| | - Mark R Winter
- Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, 31905, Israel
| | - Ligal Shternhell
- Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, 31905, Israel
| | - Tsvia Gildor
- Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, 31905, Israel
| | - Smadar Ben-Tabou de-Leon
- Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, 31905, Israel.
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18
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Remsburg C, Testa M, Song JL. Rab35 regulates skeletogenesis and gastrulation by facilitating actin remodeling and vesicular trafficking. Cells Dev 2021; 165:203660. [PMID: 34024337 DOI: 10.1016/j.cdev.2021.203660] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 11/11/2020] [Accepted: 12/21/2020] [Indexed: 11/15/2022]
Abstract
Rab35 is a small GTPase that regulates plasma membrane to early endosome vesicular trafficking and mediates actin remodeling to form actin-rich cellular structures. While the function of Rab35 in the cellular context has been examined, its role during development has not been well studied. In this study, we take advantage of the sea urchin's high fecundity, external fertilization, and transparent embryos to determine the function of Rab35 during development. We found that loss of function of Rab35 results in defects in skeletogenesis and gastrulation, which were rescued by co-injection of sea urchin Rab35. The loss of Rab35's function results in decreased endocytosis and impaired exocytosis, which may be important for skeletogenesis and gastrulation. Skeletal spicules of Rab35 knockdown embryos have reduced organized actin compared to the control, supporting the notion that Rab35 regulates actin dynamics. In addition, the skeletal and gastrulation defects induced by Rab35 knockdown were rescued by co-injection with Fascin, an actin-bundling protein, indicating that proper actin dynamics play a critical role for both skeletogenesis and gastrulation. Overall, results indicate that through its role in mediating vesicular trafficking and actin remodeling, Rab35 is an important regulator of embryonic structure formation in early development.
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Affiliation(s)
- Carolyn Remsburg
- University of Delaware, Department of Biological Sciences, Newark, DE, USA
| | - Michael Testa
- University of Delaware, Department of Biological Sciences, Newark, DE, USA
| | - Jia L Song
- University of Delaware, Department of Biological Sciences, Newark, DE, USA.
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19
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Kahil K, Varsano N, Sorrentino A, Pereiro E, Rez P, Weiner S, Addadi L. Cellular pathways of calcium transport and concentration toward mineral formation in sea urchin larvae. Proc Natl Acad Sci U S A 2020; 117:30957-30965. [PMID: 33229583 PMCID: PMC7733801 DOI: 10.1073/pnas.1918195117] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Sea urchin larvae have an endoskeleton consisting of two calcitic spicules. The primary mesenchyme cells (PMCs) are the cells that are responsible for spicule formation. PMCs endocytose sea water from the larval internal body cavity into a network of vacuoles and vesicles, where calcium ions are concentrated until they precipitate in the form of amorphous calcium carbonate (ACC). The mineral is subsequently transferred to the syncytium, where the spicule forms. Using cryo-soft X-ray microscopy we imaged intracellular calcium-containing particles in the PMCs and acquired Ca-L2,3 X-ray absorption near-edge spectra of these Ca-rich particles. Using the prepeak/main peak (L2'/ L2) intensity ratio, which reflects the atomic order in the first Ca coordination shell, we determined the state of the calcium ions in each particle. The concentration of Ca in each of the particles was also determined by the integrated area in the main Ca absorption peak. We observed about 700 Ca-rich particles with order parameters, L2'/ L2, ranging from solution to hydrated and anhydrous ACC, and with concentrations ranging between 1 and 15 M. We conclude that in each cell the calcium ions exist in a continuum of states. This implies that most, but not all, water is expelled from the particles. This cellular process of calcium concentration may represent a widespread pathway in mineralizing organisms.
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Affiliation(s)
- Keren Kahil
- Department of Structural Biology, Weizmann Institute of Science, 76100 Rehovot, Israel
| | - Neta Varsano
- Department of Structural Biology, Weizmann Institute of Science, 76100 Rehovot, Israel
| | - Andrea Sorrentino
- MISTRAL Beamline-Experiments Division, ALBA Synchrotron Light Source, Cerdanyola del Valles, 08290 Barcelona, Spain
| | - Eva Pereiro
- MISTRAL Beamline-Experiments Division, ALBA Synchrotron Light Source, Cerdanyola del Valles, 08290 Barcelona, Spain
| | - Peter Rez
- Department of Physics, Arizona State University, Tempe, AZ 85287
| | - Steve Weiner
- Department of Structural Biology, Weizmann Institute of Science, 76100 Rehovot, Israel
| | - Lia Addadi
- Department of Structural Biology, Weizmann Institute of Science, 76100 Rehovot, Israel;
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20
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Zhu Y, Sun D, Schertel A, Ning J, Fu X, Gwo PP, Watson AM, Zanetti-Domingues LC, Martin-Fernandez ML, Freyberg Z, Zhang P. Serial cryoFIB/SEM Reveals Cytoarchitectural Disruptions in Leigh Syndrome Patient Cells. Structure 2020; 29:82-87.e3. [PMID: 33096015 PMCID: PMC7802768 DOI: 10.1016/j.str.2020.10.003] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Revised: 08/31/2020] [Accepted: 10/05/2020] [Indexed: 01/21/2023]
Abstract
The advancement of serial cryoFIB/SEM offers an opportunity to study large volumes of near-native, fully hydrated frozen cells and tissues at voxel sizes of 10 nm and below. We explored this capability for pathologic characterization of vitrified human patient cells by developing and optimizing a serial cryoFIB/SEM volume imaging workflow. We demonstrate profound disruption of subcellular architecture in primary fibroblasts from a Leigh syndrome patient harboring a disease-causing mutation in USMG5 protein responsible for impaired mitochondrial energy production. Developed and optimized a serial cryoFIB/SEM volume imaging workflow Visualized the 3D structure of an entire cell under native conditions Revealed a disruption of cellular structures in primary LS patient fibroblasts Demonstrated the potential for clinical phenotyping of pathogenic tissues
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Affiliation(s)
- Yanan Zhu
- Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK
| | - Dapeng Sun
- Department of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA
| | - Andreas Schertel
- Carl Zeiss Microscopy GmbH, Zeiss Customer Center Europe, Carl-Zeiss-Strassee 22, 73447 Oberkochen, Germany
| | - Jiying Ning
- Department of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA
| | - Xiaofeng Fu
- Department of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA
| | - Pam Pam Gwo
- Department of Psychiatry, University of Pittsburgh, Pittsburgh, PA 15213, USA
| | - Alan M Watson
- Department of Cell Biology, University of Pittsburgh, Pittsburgh, PA 15213, USA
| | - Laura C Zanetti-Domingues
- Central Laser Facility, Research Complex at Harwell, STFC Rutherford Appleton Laboratory, Harwell Oxford, Didcot, Oxford OX11 0QX, UK
| | - Marisa L Martin-Fernandez
- Central Laser Facility, Research Complex at Harwell, STFC Rutherford Appleton Laboratory, Harwell Oxford, Didcot, Oxford OX11 0QX, UK
| | - Zachary Freyberg
- Department of Psychiatry, University of Pittsburgh, Pittsburgh, PA 15213, USA; Department of Cell Biology, University of Pittsburgh, Pittsburgh, PA 15213, USA
| | - Peijun Zhang
- Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK; Department of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA; Electron Bio-Imaging Centre, Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, UK.
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21
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Hu MY, Petersen I, Chang WW, Blurton C, Stumpp M. Cellular bicarbonate accumulation and vesicular proton transport promote calcification in the sea urchin larva. Proc Biol Sci 2020; 287:20201506. [PMID: 32900308 PMCID: PMC7542784 DOI: 10.1098/rspb.2020.1506] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Accepted: 08/07/2020] [Indexed: 12/12/2022] Open
Abstract
The sea urchin embryo develops a calcitic endoskeleton through intracellular formation of amorphous calcium carbonate (ACC). Intracellular precipitation of ACC, requires [Formula: see text] concentrating as well as proton export mechanisms to promote calcification. These processes are of fundamental importance in biological mineralization, but remain largely unexplored. Here, we demonstrate that the calcifying primary mesenchyme cells (PMCs) use Na+/H+-exchange (NHE) mechanisms to control cellular pH homeostasis during maintenance of the skeleton. During skeleton re-calcification, pHi of PMCs is increased accompanied by substantial elevation in intracellular [Formula: see text] mediated by the [Formula: see text] cotransporter Sp_Slc4a10. However, PMCs lower their pHi regulatory capacities associated with a reduction in NHE activity. Live-cell imaging using green fluorescent protein reporter constructs in combination with intravesicular pH measurements demonstrated alkaline and acidic populations of vesicles in PMCs and extensive trafficking of large V-type H+-ATPase (VHA)-rich acidic vesicles in blastocoelar filopodial cells. Pharmacological and gene expression analyses underline a central role of the VHA isoforms Sp_ATP6V0a1, Sp_ATP6V01_1 and Sp_ATPa1-4 for the process of skeleton re-calcification. These results highlight novel pH regulatory strategies in calcifying cells of a marine species with important implications for our understanding of the mineralization process in times of rapid changes in oceanic pH.
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Affiliation(s)
- Marian Y. Hu
- Institute of Physiology, Christian-Albrechts-University Kiel, Hermann-Rodewaldstraße 5, 24118 Kiel, Germany
| | - Inga Petersen
- Institute of Physiology, Christian-Albrechts-University Kiel, Hermann-Rodewaldstraße 5, 24118 Kiel, Germany
| | - William Weijen Chang
- Institute of Physiology, Christian-Albrechts-University Kiel, Hermann-Rodewaldstraße 5, 24118 Kiel, Germany
| | - Christine Blurton
- Institute of Immunobiology, Christian-Albrechts-University Kiel, Am Botanischen Garten 1-9, 24118 Kiel, Germany
| | - Meike Stumpp
- Institute of Immunobiology, Christian-Albrechts-University Kiel, Am Botanischen Garten 1-9, 24118 Kiel, Germany
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22
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Spehner D, Steyer AM, Bertinetti L, Orlov I, Benoit L, Pernet-Gallay K, Schertel A, Schultz P. Cryo-FIB-SEM as a promising tool for localizing proteins in 3D. J Struct Biol 2020; 211:107528. [PMID: 32387573 DOI: 10.1016/j.jsb.2020.107528] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2019] [Revised: 03/10/2020] [Accepted: 04/28/2020] [Indexed: 02/02/2023]
Abstract
Focused Ion Beam-Scanning Electron Microscopy (FIB-SEM) is an invaluable tool to visualize the 3D architecture of cell constituents and map cell networks. Recently, amorphous ice embedding techniques have been associated with FIB-SEM to ensure that the biological material remains as close as possible to its native state. Here we have vitrified human HeLa cells and directly imaged them by cryo-FIB-SEM with the secondary electron InLens detector at cryogenic temperature and without any staining. Image stacks were aligned and processed by denoising, removal of ion beam milling artefacts and local charge imbalance. Images were assembled into a 3D volume and the major cell constituents were modelled. The data illustrate the power of the workflow to provide a detailed view of the internal architecture of the fully hydrated, close-to-native, entire HeLa cell. In addition, we have studied the feasibility of combining cryo-FIB-SEM imaging with live-cell protein detection. We demonstrate that internalized gold particles can be visualized by detecting back scattered primary electrons at low kV while simultaneously acquiring signals from the secondary electron detector to image major cell features. Furthermore, gold-conjugated antibodies directed against RNA polymerase II could be observed in the endo-lysosomal pathway while labelling of the enzyme in the nucleus was not detected, a shortcoming likely due to the inadequacy between the size of the gold particles and the voxel size. With further refinements, this method promises to have a variety of applications where the goal is to localize cellular antigens while visualizing the entire native cell in three dimensions.
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Affiliation(s)
- Daniele Spehner
- Institut de Génétique et de Biologie Moléculaire et Cellulaire, Department of Integrated Structural Biology, Equipe labellisée Ligue Contre le Cancer, Illkirch, France; Centre National de la Recherche Scientifique, UMR7104, Illkirch, France; Institut National de la Santé et de la Recherche Médicale, U1258 Illkirch, France; Université de Strasbourg, Illkirch, France
| | - Anna M Steyer
- Electron Microscopy Core Unit, Department of Neurogenetics, Max Planck Institute of Experimental Medicine, Göttingen, Germany
| | - Luca Bertinetti
- Max Planck Institute of Colloids and Interfaces, Department of Biomaterials, 14424 Potsdam, Germany
| | - Igor Orlov
- Institut de Génétique et de Biologie Moléculaire et Cellulaire, Department of Integrated Structural Biology, Equipe labellisée Ligue Contre le Cancer, Illkirch, France; Centre National de la Recherche Scientifique, UMR7104, Illkirch, France; Institut National de la Santé et de la Recherche Médicale, U1258 Illkirch, France; Université de Strasbourg, Illkirch, France
| | - Lucas Benoit
- University Grenoble Alpes; Institut National de la Santé et de la Recherche Médicale U1216, Grenoble, France; Grenoble Institut Neurosciences, GIN, Grenoble, France
| | - Karin Pernet-Gallay
- University Grenoble Alpes; Institut National de la Santé et de la Recherche Médicale U1216, Grenoble, France; Grenoble Institut Neurosciences, GIN, Grenoble, France
| | - Andreas Schertel
- Carl Zeiss Microscopy GmbH, Zeiss Customer Center Europe, Carl-Zeiss-Straße 22, D-73447 Oberkochen, Germany
| | - Patrick Schultz
- Institut de Génétique et de Biologie Moléculaire et Cellulaire, Department of Integrated Structural Biology, Equipe labellisée Ligue Contre le Cancer, Illkirch, France; Centre National de la Recherche Scientifique, UMR7104, Illkirch, France; Institut National de la Santé et de la Recherche Médicale, U1258 Illkirch, France; Université de Strasbourg, Illkirch, France
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23
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Jantschke A, Pinkas I, Schertel A, Addadi L, Weiner S. Biomineralization pathways in calcifying dinoflagellates: Uptake, storage in MgCaP-rich bodies and formation of the shell. Acta Biomater 2020; 102:427-439. [PMID: 31785382 DOI: 10.1016/j.actbio.2019.11.042] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2019] [Revised: 10/17/2019] [Accepted: 11/22/2019] [Indexed: 10/25/2022]
Abstract
Little is known about shell formation of calcareous dinoflagellates, despite the fact that they are one of the major calcifying organisms of the phytoplankton. Here, calcitic cyst formation in two representative members of calcareous dinoflagellates is investigated using cryo-electron microscopy (cryo-SEM and cryo-FIB-SEM) in combination with micro-Raman and infrared spectroscopy. Only calcein-AM and not calcein enters these cells, indicating active uptake of calcium and other divalent cations. Multifunctional vacuoles containing crystalline inclusions are observed, and the crystals are identified as anhydrous guanine in the β-form. The same vacuolar enclosures contain dense magnesium-, calcium-, and phosphorous-rich mineral bodies. These bodies are presumably secreted into the outer matrix where calcite forms. Calcite formation occurs via multiple independent nucleation events, and the different crystals grow with preferred orientation into a dense reticular network that forms the mature calcitic shell. We suggest a biomineralization pathway for calcareous dinoflagellates that includes (1) active uptake of calcium through the membranes, (2) deposition of Mg2+- and Ca2+-ions inside disordered MgCaP-rich mineral bodies, (3) secretion of these bodies to the inter-membrane space, and (4) Formation and growth of calcite into a dense reticulate network. This study provides new insights into calcium uptake, storage and transport in calcifying dinoflagellates. STATEMENT OF SIGNIFICANCE: Little is known about the shell formation of calcareous dinoflagellates, despite the fact that they are one of the major calcifying organisms of the phytoplankton. We used state-of-the-art cryo-electron microscopy (cryo-SEM and cryo-FIB-SEM) in combination with micro-Raman spectroscopy to provide new insights into mineral formation in calcifying dinoflagellates. To date, intracellular crystalline calcite was assumed to be involved in calcite shell formation. Surprisingly, we identify these crystalline inclusions as anhydrous guanine suggesting that they are not involved in biomineralization. Instead, a key finding is that MgCaP-rich bodies are probably secreted into the outer matrix where the calcite shell is formed. We suggest that these bodies are an essential part of Ca-uptake, -storage and -transport and propose a new biomineralization model.
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Liu YW, Sutton JN, Ries JB, Eagle RA. Regulation of calcification site pH is a polyphyletic but not always governing response to ocean acidification. SCIENCE ADVANCES 2020; 6:eaax1314. [PMID: 32064331 PMCID: PMC6989143 DOI: 10.1126/sciadv.aax1314] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2019] [Accepted: 11/21/2019] [Indexed: 05/21/2023]
Abstract
The response of marine-calcifying organisms to ocean acidification (OA) is highly variable, although the mechanisms behind this variability are not well understood. Here, we use the boron isotopic composition (δ11B) of biogenic calcium carbonate to investigate the extent to which organisms' ability to regulate pH at their site of calcification (pHCF) determines their calcification responses to OA. We report comparative δ11B analyses of 10 species with divergent calcification responses (positive, parabolic, threshold, and negative) to OA. Although the pHCF is closely coupled to calcification responses only in 3 of the 10 species, all 10 species elevate pHCF above pHsw under elevated pCO2. This result suggests that these species may expend additional energy regulating pHCF under future OA. This strategy of elevating pHCF above pHsw appears to be a polyphyletic, if not universal, response to OA among marine calcifiers-although not always the principal factor governing a species' response to OA.
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Affiliation(s)
- Yi-Wei Liu
- Université de Brest, UBO, CNRS, IRD, Ifremer, Institut Universitaire Européen de la Mer, LEMAR, Rue Dumont d’Urville, 29280 Plouzané, France
- Institute of Earth Sciences, Academia Sinica, 128, Sec. 2, Academia Road, Nangang, Taipei 11529, Taiwan
- Corresponding author. (Y.-W.L.); (R.A.E.)
| | - Jill N. Sutton
- Université de Brest, UBO, CNRS, IRD, Ifremer, Institut Universitaire Européen de la Mer, LEMAR, Rue Dumont d’Urville, 29280 Plouzané, France
| | - Justin B. Ries
- Department of Marine and Environmental Sciences, Marine Science Center, Northeastern University, 430 Nahant Rd., Nahant, MA 01908, USA
| | - Robert A. Eagle
- Université de Brest, UBO, CNRS, IRD, Ifremer, Institut Universitaire Européen de la Mer, LEMAR, Rue Dumont d’Urville, 29280 Plouzané, France
- Institute of the Environment and Sustainability, University of California–Los Angeles, La Kretz Hall, 619 Charles E. Young Dr. E #300, Los Angeles, CA 90095, USA
- Atmospheric and Oceanic Sciences Department, University of California–Los Angeles, Math Sciences Building, 520 Portola Plaza, Los Angeles, CA 90095, USA
- Corresponding author. (Y.-W.L.); (R.A.E.)
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25
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Hörning M, Schertel A, Schneider R, Lemloh ML, Schweikert MR, Weiss IM. Mineralized scale patterns on the cell periphery of the chrysophyte Mallomonas determined by comparative 3D Cryo-FIB SEM data processing. J Struct Biol 2019; 209:107403. [PMID: 31614182 DOI: 10.1016/j.jsb.2019.10.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2019] [Revised: 09/27/2019] [Accepted: 10/09/2019] [Indexed: 11/26/2022]
Abstract
Unicellular protists can biomineralize spatially complex and functional shells. A typical cell of the photosynthetic synurophyte Mallomonas is covered by about 60-100 silica scales. Their geometric arrangement, the so-called scale case, mainly depends on the species and on the cell cycle. In this study, the scale case of the synurophyte Mallomonas was preserved in aqueous suspension using high-pressure freezing (HPF). From this specimen, a three-dimensional (3D) data set spanning a volume of about 25.6 μm × 19.2 μm × 4.2 μm with a voxel size of 12.5 nm × 12.5 nm × 25.0 nm was collected by Cryo-FIB SEM in 3 h and 24 min. SEM imaging using In-lens SE detection allowed to clearly differentiate between mineralized, curved scales of less than 0.2 μm thickness and organic cellular ultrastructure or vitrified ice. The three-dimensional spatial orientations and shapes of a minimum set of scales (N = 13) were identified by visual inspection, and manually segmented. Manual and automated segmentation approaches were comparatively applied to one arbitrarily selected reference scale using the differences in grey level between scales and other constituents. Computational automated routines and principal component analysis of the experimentally extracted data created a realistic mathematical model based on the Fibonacci pattern theory. A complete in silico scale case of Mallomonas was reconstructed showing an optimized scale coverage on the cell surface, similarly as it was observed experimentally. The minimum time requirements from harvesting the living cells to the final scale case determination by Cryo-FIB SEM and computational image processing are discussed.
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Affiliation(s)
- Marcel Hörning
- Institute of Biomaterials and Biomolecular Systems, Biobased Materials Group, University of Stuttgart, Pfaffenwaldring 57, 70569 Stuttgart, Germany; AMICA - Stuttgart Research Focus (SRF), University of Stuttgart, Pfaffenwaldring 32, 70569 Stuttgart, Germany.
| | - Andreas Schertel
- Carl Zeiss Microscopy GmbH, Carl-Zeiss-Straße 22, 73447 Oberkochen, Germany
| | - Ralf Schneider
- High Performance Computing Center Stuttgart (HLRS), Nobelstr. 19, 70569 Stuttgart, Germany
| | - Marie-Louise Lemloh
- AMICA - Stuttgart Research Focus (SRF), University of Stuttgart, Pfaffenwaldring 32, 70569 Stuttgart, Germany; Materials Testing Institute (MPA), University of Stuttgart, Pfaffenwaldring 32, 70569 Stuttgart, Germany
| | - Michael R Schweikert
- Institute of Biomaterials and Biomolecular Systems, Biobased Materials Group, University of Stuttgart, Pfaffenwaldring 57, 70569 Stuttgart, Germany; AMICA - Stuttgart Research Focus (SRF), University of Stuttgart, Pfaffenwaldring 32, 70569 Stuttgart, Germany
| | - Ingrid M Weiss
- Institute of Biomaterials and Biomolecular Systems, Biobased Materials Group, University of Stuttgart, Pfaffenwaldring 57, 70569 Stuttgart, Germany; AMICA - Stuttgart Research Focus (SRF), University of Stuttgart, Pfaffenwaldring 32, 70569 Stuttgart, Germany; Stuttgart Research Center Systems Biology (SRCSB), University of Stuttgart, Stuttgart 70569, Germany
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26
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Ramesh K, Yarra T, Clark MS, John U, Melzner F. Expression of calcification-related ion transporters during blue mussel larval development. Ecol Evol 2019; 9:7157-7172. [PMID: 31380040 PMCID: PMC6662379 DOI: 10.1002/ece3.5287] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2018] [Revised: 05/06/2019] [Accepted: 05/08/2019] [Indexed: 01/03/2023] Open
Abstract
The physiological processes driving the rapid rates of calcification in larval bivalves are poorly understood. Here, we use a calcification substrate-limited approach (low dissolved inorganic carbon, C T) and mRNA sequencing to identify proteins involved in bicarbonate acquisition during shell formation. As a secondary approach, we examined expression of ion transport and shell matrix proteins (SMPs) over the course of larval development and shell formation. We reared four families of Mytilus edulis under ambient (ca. 1865 µmol/kg) and low C T (ca. 941 µmol/kg) conditions and compared expression patterns at six developmental time points. Larvae reared under low C T exhibited a developmental delay, and a small subset of contigs was differentially regulated between ambient and low C T conditions. Of particular note was the identification of one contig encoding an anion transporter (SLC26) which was strongly upregulated (2.3-2.9 fold) under low C T conditions. By analyzing gene expression profiles over the course of larval development, we are able to isolate sequences encoding ion transport and SMPs to enhance our understanding of cellular pathways underlying larval calcification processes. In particular, we observe the differential expression of contigs encoding SLC4 family members (sodium bicarbonate cotransporters, anion exchangers), calcium-transporting ATPases, sodium/calcium exchangers, and SMPs such as nacrein, tyrosinase, and transcripts related to chitin production. With a range of candidate genes, this work identifies ion transport pathways in bivalve larvae and by applying comparative genomics to investigate temporal expression patterns, provides a foundation for further studies to functionally characterize the proteins involved in larval calcification.
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Affiliation(s)
- Kirti Ramesh
- GEOMAR Helmholtz Centre for Ocean ResearchKielGermany
- Department of Biological and Environmental Sciences, Sven Lovén Centre for Marine Infrastructure‐KristinebergUniversity of GothenburgFiskebäckskilSweden
| | - Tejaswi Yarra
- British Antarctic SurveyNatural Environment Research CouncilCambridgeUK
- Ashworth Laboratories, Institute of Evolutionary BiologyUniversity of EdinburghEdinburghUK
| | - Melody S. Clark
- British Antarctic SurveyNatural Environment Research CouncilCambridgeUK
| | - Uwe John
- Ecological ChemistryAlfred‐Wegener‐Institut Helmholtz‐Zentrum für Polar‐und MeeresforschungBremerhavenGermany
- Helmholtz‐Institute for Functional Marine BiodiversityOldenburgGermany
| | - Frank Melzner
- GEOMAR Helmholtz Centre for Ocean ResearchKielGermany
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27
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Possible cooption of a VEGF-driven tubulogenesis program for biomineralization in echinoderms. Proc Natl Acad Sci U S A 2019; 116:12353-12362. [PMID: 31152134 DOI: 10.1073/pnas.1902126116] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023] Open
Abstract
Biomineralization is the process by which living organisms use minerals to form hard structures that protect and support them. Biomineralization is believed to have evolved rapidly and independently in different phyla utilizing preexisting components. The mechanistic understanding of the regulatory networks that drive biomineralization and their evolution is far from clear. Sea urchin skeletogenesis is an excellent model system for studying both gene regulation and mineral uptake and deposition. The sea urchin calcite spicules are formed within a tubular cavity generated by the skeletogenic cells controlled by vascular endothelial growth factor (VEGF) signaling. The VEGF pathway is essential for biomineralization in echinoderms, while in many other phyla, across metazoans, it controls tubulogenesis and vascularization. Despite the critical role of VEGF signaling in sea urchin spiculogenesis, the downstream program it activates was largely unknown. Here we study the cellular and molecular machinery activated by the VEGF pathway during sea urchin spiculogenesis and reveal multiple parallels to the regulation of vertebrate vascularization. Human VEGF rescues sea urchin VEGF knockdown, vesicle deposition into an internal cavity plays a significant role in both systems, and sea urchin VEGF signaling activates hundreds of genes, including biomineralization and interestingly, vascularization genes. Moreover, five upstream transcription factors and three signaling genes that drive spiculogenesis are homologous to vertebrate factors that control vascularization. Overall, our findings suggest that sea urchin spiculogenesis and vertebrate vascularization diverged from a common ancestral tubulogenesis program, broadly adapted for vascularization and specifically coopted for biomineralization in the echinoderm phylum.
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28
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Calcium Activity Dynamics Correlate with Neuronal Phenotype at a Single Cell Level and in a Threshold-Dependent Manner. Int J Mol Sci 2019; 20:ijms20081880. [PMID: 30995769 PMCID: PMC6515432 DOI: 10.3390/ijms20081880] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2019] [Revised: 04/08/2019] [Accepted: 04/10/2019] [Indexed: 12/23/2022] Open
Abstract
Calcium is a ubiquitous signaling molecule that plays a vital role in many physiological processes. Recent work has shown that calcium activity is especially critical in vertebrate neural development. Here, we investigated if calcium activity and neuronal phenotype are correlated only on a population level or on the level of single cells. Using Xenopus primary cell culture in which individual cells can be unambiguously identified and associated with a molecular phenotype, we correlated calcium activity with neuronal phenotype on the single-cell level. This analysis revealed that, at the neural plate stage, a high frequency of low-amplitude spiking activity correlates with an excitatory, glutamatergic phenotype, while high-amplitude spiking activity correlates with an inhibitory, GABAergic phenotype. Surprisingly, we also found that high-frequency, low-amplitude spiking activity correlates with neural progenitor cells and that differentiating cells exhibit higher spike amplitude. Additional methods of analysis suggested that differentiating marker tubb2b-expressing cells exhibit relatively persistent and predictable calcium activity compared to the irregular activity of neural progenitor cells. Our study highlights the value of using a range of thresholds for analyzing calcium activity data and underscores the importance of employing multiple methods to characterize the often irregular, complex patterns of calcium activity during early neural development.
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29
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Intercellular pathways from the vasculature to the forming bone in the zebrafish larval caudal fin: Possible role in bone formation. J Struct Biol 2019; 206:139-148. [PMID: 30858049 DOI: 10.1016/j.jsb.2019.02.011] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2018] [Revised: 02/23/2019] [Accepted: 02/25/2019] [Indexed: 11/20/2022]
Abstract
The pathway of ion supply from the source to the site of bone deposition in vertebrates is thought to involve transport through the vasculature, followed by ion concentration in osteoblasts. The cells deposit a precursor mineral phase in vesicles, which are then exocytosed into the extracellular matrix. We observed that the entire skeleton of zebrafish larvae, is labelled within minutes after injection of calcein or FITC-dextran into the blood. This raised the possibility that there is an additional pathway of solute transport that can account for the rapid labelling. We used cryo-FIB-SEM serial block face imaging to reconstruct at high resolution the 3D ultrastructure of the caudal tail of the zebrafish larva. This reconstruction clearly shows that there is a continuous intercellular pathway from the artery to the forming bone, and from the forming bone to the vein. Fluorescence light microscopy shows that calcein and FITC-dextran form a reticulate network pattern in this tissue, which we attribute to the dye being present in the intercellular space. We conclude that this intercellular continuous space may be a supply route for ions, mineral and other solute or particulate material to the fast forming bone.
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30
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Kołbuk D, Dubois P, Stolarski J, Gorzelak P. Effects of seawater chemistry (Mg 2+/Ca 2+ ratio) and diet on the skeletal Mg/Ca ratio in the common sea urchin Paracentrotus lividus. MARINE ENVIRONMENTAL RESEARCH 2019; 145:22-26. [PMID: 30777345 DOI: 10.1016/j.marenvres.2019.02.006] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2018] [Revised: 02/08/2019] [Accepted: 02/08/2019] [Indexed: 06/09/2023]
Abstract
It has been argued that concentration of major metallic ions such as Mg2+ and Ca2+ plays a role in determining the composition of the echinoderm skeleton. Consequently, in several studies Mg/Ca ratio from modern and fossil echinoderm ossicles was used as a proxy of secular Mg2+/Ca2+ changes of Phanerozoic seawater. However, although significant progress has been made in understanding biomineralization of echinoderms, it is still largely unknown what are the sources and physiological pathways of major ions that contribute to skeleton formation. Herein we tested the effects of modifications of ambient seawater Mg2+/Ca2+ ratio (which is typically ∼5) and Mg-enrichment of the diet on the Mg/Ca ratio in regenerating spines of sea urchin Paracentrotus lividus under experimental conditions. We found that sea urchins cultured in seawater with Mg2+/Ca2+ ratio decreased to ∼1.9 produced a skeleton with also decreased Mg/Ca ratio. However, the skeleton of specimens fed on a Mg-enriched diet showed significantly higher Mg/Ca ratio. This suggests that the seawater is an important but not the only source of ions that contributes to the Mg/Ca ratio of the skeleton. Consequently, the reliability of geochemical models that link directly seawater chemistry with the Mg/Ca ratio of the skeleton should be reevaluated.
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Affiliation(s)
- Dorota Kołbuk
- Institute of Paleobiology, Polish Academy of Sciences, Twarda 51/55, PL-00-818, Warsaw, Poland
| | - Philippe Dubois
- Université Libre de Bruxelles, Faculté des Sciences, Laboratoire de Biologie Marine, CP 160/15, av. F.D. Roosevelt, 50 B-1050, Bruxelles, Belgium
| | - Jarosław Stolarski
- Institute of Paleobiology, Polish Academy of Sciences, Twarda 51/55, PL-00-818, Warsaw, Poland
| | - Przemysław Gorzelak
- Institute of Paleobiology, Polish Academy of Sciences, Twarda 51/55, PL-00-818, Warsaw, Poland.
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31
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Rao A, Roncal-Herrero T, Schmid E, Drechsler M, Scheffner M, Gebauer D, Kröger R, Cölfen H. On Biomineralization: Enzymes Switch on Mesocrystal Assembly. ACS CENTRAL SCIENCE 2019; 5:357-364. [PMID: 30834324 PMCID: PMC6396387 DOI: 10.1021/acscentsci.8b00853] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2018] [Indexed: 05/04/2023]
Abstract
Cellular machineries guide the bottom-up pathways toward crystal superstructures based on the transport of inorganic precursors and their precise integration with organic frameworks. The biosynthesis of mesocrystalline spines entails concerted interactions between biomolecules and inorganic precursors; however, the bioinorganic interactions and interfaces that regulate material form and growth as well as the selective emergence of structural complexity in the form of nanostructured crystals are not clear. By investigating mineral nucleation under the regulation of recombinant proteins, we show that SpSM50, a matrix protein of the sea urchin spine, stabilizes mineral precursors via vesicle-confinement, a function conferred by a low-complexity, disordered region. Site-specific proteolysis of this domain by a collagenase initiates phase transformation of the confined mineral phase. The residual C-type lectin domain molds the fluidic mineral precursor into hierarchical mesocrystals identical to structural crystal modules constituting the biogenic mineral. Thus, the regulatory functions of proteolytic enzymes can guide biomacromolecular domain constitutions and interfaces, in turn determining inorganic phase transformations toward hybrid materials as well as integrating organic and inorganic components across hierarchical length scales. Bearing striking resemblance to biogenic mineralization, these hybrid materials recruit bioinorganic interactions which elegantly intertwine nucleation and crystallization phenomena with biomolecular structural dynamics, hence elucidating a long-sought key of how nature can orchestrate complex biomineralization processes.
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Affiliation(s)
- Ashit Rao
- Physical
Chemistry, Department of Chemistry, University
of Konstanz, Universitätsstr. 10, Konstanz 78464, Germany
- Faculty
of Science and Technology, Physics of Complex Fluids, University of Twente, PO Box 217, Enschede 7500 AE, The
Netherlands
| | - Teresa Roncal-Herrero
- Department
of Physics, University of York, Heslington YO10 5DD, United Kingdom
- School
of Chemical and Process Engineering, University
of Leeds, 211 Clarendon
Road, Leeds LS2 9JT, United Kingdom
| | - Elina Schmid
- Physical
Chemistry, Department of Chemistry, University
of Konstanz, Universitätsstr. 10, Konstanz 78464, Germany
| | - Markus Drechsler
- Bavarian
Polymer Institute, Keylab Electron and Optical Microscopy, University of Bayreuth, Universitätsstr. 30, Bayreuth 95440, Germany
| | - Martin Scheffner
- Cellular
Biochemistry, Department of Biology, University
of Konstanz, Universitätsstr. 10, Konstanz 78464, Germany
| | - Denis Gebauer
- Physical
Chemistry, Department of Chemistry, University
of Konstanz, Universitätsstr. 10, Konstanz 78464, Germany
| | - Roland Kröger
- Department
of Physics, University of York, Heslington YO10 5DD, United Kingdom
| | - Helmut Cölfen
- Physical
Chemistry, Department of Chemistry, University
of Konstanz, Universitätsstr. 10, Konstanz 78464, Germany
- E-mail:
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32
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Gebauer D, Wolf SE. Designing Solid Materials from Their Solute State: A Shift in Paradigms toward a Holistic Approach in Functional Materials Chemistry. J Am Chem Soc 2019; 141:4490-4504. [DOI: 10.1021/jacs.8b13231] [Citation(s) in RCA: 87] [Impact Index Per Article: 17.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
- Denis Gebauer
- Department of Chemistry, Physical Chemistry, University of Konstanz, 78457 Konstanz, Germany
| | - Stephan E. Wolf
- Department of Materials Science and Engineering, Institute of Glass and Ceramics and Interdisciplinary Center for Functional Particle Systems, Friedrich-Alexander-University Erlangen-Nuremberg, 91058 Erlangen, Germany
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33
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Moreno B, DiCorato A, Park A, Mobilia K, Knapp R, Bleher R, Wilke C, Alvares K, Joester D. Culture of and experiments with sea urchin embryo primary mesenchyme cells. Methods Cell Biol 2019; 150:293-330. [PMID: 30777181 PMCID: PMC8273911 DOI: 10.1016/bs.mcb.2019.01.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Skeletogenesis in the sea urchin embryo gives rise to a pair of intricate endoskeletal spicules. Deposition of these skeletal elements in the early larva is the outcome of a morphogenetic program that begins with maternal inputs in the early zygote and results in the specification of the large micromere-primary mesenchyme cell (PMC) lineage. PMCs are of considerable interest as a model system, not only to dissect the mechanism of specific developmental processes, but also to investigate their evolution and the unrivaled level of control over the formation of a graded, mechanically robust, yet single crystalline biomineral. The ability to study gene regulatory circuits, cellular behavior, signaling pathways, and molecular players involved in biomineralization is significantly boosted by the high level of autonomy of PMCs. In fact, in the presence of horse serum, micromeres differentiate into PMCs and produce spicules in vitro, separated from the embryonic milieu. PMC culture eliminates indirect effects that can complicate the interpretation of experiments in vivo, offers superior spatiotemporal control, enables PMC-specific readouts, and is compatible with most imaging and characterization techniques. In this chapter, we provide an updated protocol, based on the pioneering work by Okazaki and Wilt, for the isolation of micromeres and subsequent culture of PMCs, as well as protocols for fixation and staining for fluorescent microscopy, preparation of cell cultures for electron microscopy, and the isolation of RNA.
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Affiliation(s)
- Bradley Moreno
- Department of Materials Science and Engineering, Northwestern University, Evanston, IL, United States
| | - Allessandra DiCorato
- Department of Materials Science and Engineering, Northwestern University, Evanston, IL, United States
| | - Alexander Park
- Department of Materials Science and Engineering, Northwestern University, Evanston, IL, United States
| | - Kellen Mobilia
- Department of Materials Science and Engineering, Northwestern University, Evanston, IL, United States
| | - Regina Knapp
- Department of Materials Science and Engineering, Northwestern University, Evanston, IL, United States
| | - Reiner Bleher
- Department of Materials Science and Engineering, Northwestern University, Evanston, IL, United States
| | - Charlene Wilke
- Department of Materials Science and Engineering, Northwestern University, Evanston, IL, United States
| | - Keith Alvares
- Department of Materials Science and Engineering, Northwestern University, Evanston, IL, United States
| | - Derk Joester
- Department of Materials Science and Engineering, Northwestern University, Evanston, IL, United States.
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Albéric M, Stifler CA, Zou Z, Sun CY, Killian CE, Valencia S, Mawass MA, Bertinetti L, Gilbert PUPA, Politi Y. Growth and regrowth of adult sea urchin spines involve hydrated and anhydrous amorphous calcium carbonate precursors. JOURNAL OF STRUCTURAL BIOLOGY-X 2019; 1:100004. [PMID: 32647811 PMCID: PMC7337052 DOI: 10.1016/j.yjsbx.2019.100004] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/22/2018] [Revised: 01/27/2019] [Accepted: 01/28/2019] [Indexed: 01/25/2023]
Abstract
In various mineralizing marine organisms, calcite or aragonite crystals form through the initial deposition of amorphous calcium carbonate (ACC) phases with different hydration levels. Using X-ray PhotoEmission Electron spectroMicroscopy (X-PEEM), ACCs with varied spectroscopic signatures were previously identified. In particular, ACC type I and II were recognized in embryonic sea urchin spicules. ACC type I was assigned to hydrated ACC based on spectral similarity with synthetic hydrated ACC. However, the identity of ACC type II has never been unequivocally determined experimentally. In the present study we show that synthetic anhydrous ACC and ACC type II identified here in sea urchin spines, have similar Ca L2,3-edge spectra. Moreover, using X-PEEM chemical mapping, we revealed the presence of ACC-H2O and anhydrous ACC in growing stereom and septa regions of sea urchin spines, supporting their role as precursor phases in both structures. However, the distribution and the abundance of the two ACC phases differ substantially between the two growing structures, suggesting a variation in the crystal growth mechanism; in particular, ACC dehydration, in the two-step reaction ACC-H2O → ACC → calcite, presents different kinetics, which are proposed to be controlled biologically.
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Affiliation(s)
- Marie Albéric
- Department of Biomaterials, Max Planck Institute of Colloids and Interfaces, 14424 Potsdam, Germany
| | - Cayla A Stifler
- Department of Physics, University of Wisconsin, Madison, WI 53706, USA
| | - Zhaoyong Zou
- Department of Biomaterials, Max Planck Institute of Colloids and Interfaces, 14424 Potsdam, Germany.,State Key Laboratory of Advanced Technology for Materials Synthesis and Processing, Wuhan University of Technology, 430070 Wuhan, China
| | - Chang-Yu Sun
- Department of Physics, University of Wisconsin, Madison, WI 53706, USA.,Materials Science Program, University of Wisconsin, Madison, WI 53706, USA
| | - Christopher E Killian
- Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA
| | - Sergio Valencia
- Helmholtz-Zentrum Berlin für Materialen & Energie, 12489 Berlin, Germany
| | | | - Luca Bertinetti
- Department of Biomaterials, Max Planck Institute of Colloids and Interfaces, 14424 Potsdam, Germany
| | - Pupa U P A Gilbert
- Department of Physics, University of Wisconsin, Madison, WI 53706, USA.,Departments of Chemistry, Geoscience, Materials Science and Engineering, University of Wisconsin, Madison, WI 53706, USA
| | - Yael Politi
- Department of Biomaterials, Max Planck Institute of Colloids and Interfaces, 14424 Potsdam, Germany
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Shashikant T, Khor JM, Ettensohn CA. From genome to anatomy: The architecture and evolution of the skeletogenic gene regulatory network of sea urchins and other echinoderms. Genesis 2018; 56:e23253. [PMID: 30264451 PMCID: PMC6294693 DOI: 10.1002/dvg.23253] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2018] [Revised: 09/14/2018] [Accepted: 09/23/2018] [Indexed: 01/19/2023]
Abstract
The skeletogenic gene regulatory network (GRN) of sea urchins and other echinoderms is one of the most intensively studied transcriptional networks in any developing organism. As such, it serves as a preeminent model of GRN architecture and evolution. This review summarizes our current understanding of this developmental network. We describe in detail the most comprehensive model of the skeletogenic GRN, one developed for the euechinoid sea urchin Strongylocentrotus purpuratus, including its initial deployment by maternal inputs, its elaboration and stabilization through regulatory gene interactions, and its control of downstream effector genes that directly drive skeletal morphogenesis. We highlight recent comparative studies that have leveraged the euechinoid GRN model to examine the evolution of skeletogenic programs in diverse echinoderms, studies that have revealed both conserved and divergent features of skeletogenesis within the phylum. Last, we summarize the major insights that have emerged from analysis of the structure and evolution of the echinoderm skeletogenic GRN and identify key, unresolved questions as a guide for future work.
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Affiliation(s)
- Tanvi Shashikant
- Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania
| | - Jian Ming Khor
- Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania
| | - Charles A Ettensohn
- Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania
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36
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Expanding horizons of cryo-tomography to larger volumes. Curr Opin Microbiol 2018; 43:155-161. [DOI: 10.1016/j.mib.2018.01.001] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2017] [Revised: 01/02/2018] [Accepted: 01/03/2018] [Indexed: 12/18/2022]
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Hu MY, Yan JJ, Petersen I, Himmerkus N, Bleich M, Stumpp M. A SLC4 family bicarbonate transporter is critical for intracellular pH regulation and biomineralization in sea urchin embryos. eLife 2018; 7:36600. [PMID: 29714685 PMCID: PMC5986267 DOI: 10.7554/elife.36600] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2018] [Accepted: 04/30/2018] [Indexed: 12/21/2022] Open
Abstract
Efficient pH regulation is a fundamental requisite of all calcifying systems in animals and plants but with the underlying pH regulatory mechanisms remaining largely unknown. Using the sea urchin larva, this work identified the SLC4 HCO3- transporter family member SpSlc4a10 to be critically involved in the formation of an elaborate calcitic endoskeleton. SpSlc4a10 is specifically expressed by calcifying primary mesenchyme cells with peak expression during de novo formation of the skeleton. Knock-down of SpSlc4a10 led to pH regulatory defects accompanied by decreased calcification rates and skeleton deformations. Reductions in seawater pH, resembling ocean acidification scenarios, led to an increase in SpSlc4a10 expression suggesting a compensatory mechanism in place to maintain calcification rates. We propose a first pH regulatory and HCO3- concentrating mechanism that is fundamentally linked to the biological precipitation of CaCO3. This knowledge will help understanding biomineralization strategies in animals and their interaction with a changing environment. Many marine organisms such as mussels, sea urchins or corals, have skeletons and shells, which – due to their beautiful colors and shapes – are often desirable collector pieces. These structures are made from calcium and carbonate ions that react to form calcium carbonate crystals in a process known as biomineralization. In sea urchin larvae, for example, the skeleton is built by so-called primary mesenchyme cells, which work similar to the bone forming cells in mammals. These mesenchyme cells use calcium from the sea water, which travels to the site where the shell starts to form. About half of the carbonate comes from carbon dioxide that the animals make as they breathe, but it is not known how the other half gets to the site of biomineralization. Producing a skeleton generates acid, and marine animals need to be able to regulate their pH levels, as too acidic environments can dissolve the calcium carbonate and threatening to destroy the developing shell. How cells accumulate enough carbonate to make their shells, and how they cope with acidity is still poorly understood. Here, Hu et al. address this problem by studying purple sea urchin larvae, revealing that they use ion transporters to gather bicarbonate from seawater. These structures are part of a group of bicarbonate transporters known as the ‘SLC4 transporter family’, which sit across the membrane of the mesenchyme cells and move the bicarbonate ions along. As the sea urchin larvae develop, the levels of the transporter protein start to rise in mesenchyme cells, peaking around the time they are producing the skeleton. Stopping the production of the transporter hindered the larvae from building normal skeletons and also made their cells more acidic. It turns out that bicarbonate is more than a skeleton ingredient – it also helps to buffer the acid made in the process. Bicarbonate ions can combine with acidic molecules to form water and carbon dioxide. Bicarbonate pumped in from the sea neutralises the acidic molecules made during calcium carbonate formation, which helps to stabilize pH levels. When the acidity of the water was experimentally increased, it prompted the sea urchins to produce more of the SLC4 transporters, revealing that they may have another role to play. Their acid-neutralizing capability helped the animals to cope with changes in their environment. Taking on more bicarbonate could therefore help to compensate for rising acidity, allowing skeleton production to carry on as normal. This last finding is important in the context of ocean acidification. As the amount of carbon dioxide in the atmosphere increases, more of the gas dissolves in the sea. The chemical reactions that follow make the water more acidic and decreases the pH levels of the sea. Understanding how animals make their skeletons and shells, and manage acid, could reveal how they will cope as the environment changes in the future.
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Affiliation(s)
- Marian Y Hu
- Institute of Physiology, Christian-Albrechts University of Kiel, Kiel, Germany
| | - Jia-Jiun Yan
- Institute of Physiology, Christian-Albrechts University of Kiel, Kiel, Germany.,Institute of Cellular and Organismic Biology, Taipei, Taiwan
| | - Inga Petersen
- Institute of Physiology, Christian-Albrechts University of Kiel, Kiel, Germany
| | - Nina Himmerkus
- Institute of Physiology, Christian-Albrechts University of Kiel, Kiel, Germany
| | - Markus Bleich
- Institute of Physiology, Christian-Albrechts University of Kiel, Kiel, Germany
| | - Meike Stumpp
- Comparative Immunobiology, Institute of Zoology, Christian-Albrechts University of Kiel, Kiel, Germany
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38
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Kunitake JAMR, Choi S, Nguyen KX, Lee MM, He F, Sudilovsky D, Morris PG, Jochelson MS, Hudis CA, Muller DA, Fratzl P, Fischbach C, Masic A, Estroff LA. Correlative imaging reveals physiochemical heterogeneity of microcalcifications in human breast carcinomas. J Struct Biol 2018; 202:25-34. [PMID: 29221896 PMCID: PMC5835408 DOI: 10.1016/j.jsb.2017.12.002] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2017] [Accepted: 12/02/2017] [Indexed: 02/02/2023]
Abstract
Microcalcifications (MCs) are routinely used to detect breast cancer in mammography. Little is known, however, about their materials properties and associated organic matrix, or their correlation to breast cancer prognosis. We combine histopathology, Raman microscopy, and electron microscopy to image MCs within snap-frozen human breast tissue and generate micron-scale resolution correlative maps of crystalline phase, trace metals, particle morphology, and organic matrix chemical signatures within high grade ductal carcinoma in situ (DCIS) and invasive cancer. We reveal the heterogeneity of mineral-matrix pairings, including punctate apatitic particles (<2 µm) with associated trace elements (e.g., F, Na, and unexpectedly Al) distributed within the necrotic cores of DCIS, and both apatite and spheroidal whitlockite particles in invasive cancer within a matrix containing spectroscopic signatures of collagen, non-collagen proteins, cholesterol, carotenoids, and DNA. Among the three DCIS samples, we identify key similarities in MC morphology and distribution, supporting a dystrophic mineralization pathway. This multimodal methodology lays the groundwork for establishing MC heterogeneity in the context of breast cancer biology, and could dramatically improve current prognostic models.
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Affiliation(s)
- Jennie A M R Kunitake
- Department of Materials Science and Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Siyoung Choi
- Nancy E. and Peter C. Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Kayla X Nguyen
- School of Applied and Engineering Physics, Cornell University, Ithaca, NY 14853, USA
| | - Meredith M Lee
- Department of Materials Science and Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Frank He
- Nancy E. and Peter C. Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Daniel Sudilovsky
- Department of Pathology and Laboratory Medicine, Cayuga Medical Center at Ithaca, Ithaca, NY 14850, USA; Department of Pathology, Upstate Medical University, SUNY, Binghamton, NY 13904, USA
| | - Patrick G Morris
- Breast Medicine Service, Department of Medicine, Memorial Sloan Kettering Cancer Center/Evelyn H. Lauder Breast and Imaging Center, New York, NY 10065, USA
| | - Maxine S Jochelson
- Department of Radiology, Memorial Sloan Kettering Cancer Center/Evelyn H. Lauder Breast and Imaging Center, New York, NY 10065, USA
| | - Clifford A Hudis
- Breast Medicine Service, Department of Medicine, Memorial Sloan Kettering Cancer Center/Evelyn H. Lauder Breast and Imaging Center, New York, NY 10065, USA
| | - David A Muller
- School of Applied and Engineering Physics, Cornell University, Ithaca, NY 14853, USA; Kavli Institute at Cornell for Nanoscale Science, Cornell University, Ithaca, NY 14853, USA
| | - Peter Fratzl
- Department of Biomaterials, Max Planck Institute of Colloids and Interfaces, Research Campus Potsdam-Golm, 14424 Potsdam, Germany
| | - Claudia Fischbach
- Nancy E. and Peter C. Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY 14853, USA; Kavli Institute at Cornell for Nanoscale Science, Cornell University, Ithaca, NY 14853, USA.
| | - Admir Masic
- Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
| | - Lara A Estroff
- Department of Materials Science and Engineering, Cornell University, Ithaca, NY 14853, USA; Kavli Institute at Cornell for Nanoscale Science, Cornell University, Ithaca, NY 14853, USA.
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Comparison of 3D cellular imaging techniques based on scanned electron probes: Serial block face SEM vs. Axial bright-field STEM tomography. J Struct Biol 2018; 202:216-228. [PMID: 29408702 DOI: 10.1016/j.jsb.2018.01.012] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2017] [Revised: 01/26/2018] [Accepted: 01/30/2018] [Indexed: 11/22/2022]
Abstract
Microscopies based on focused electron probes allow the cell biologist to image the 3D ultrastructure of eukaryotic cells and tissues extending over large volumes, thus providing new insight into the relationship between cellular architecture and function of organelles. Here we compare two such techniques: electron tomography in conjunction with axial bright-field scanning transmission electron microscopy (BF-STEM), and serial block face scanning electron microscopy (SBF-SEM). The advantages and limitations of each technique are illustrated by their application to determining the 3D ultrastructure of human blood platelets, by considering specimen geometry, specimen preparation, beam damage and image processing methods. Many features of the complex membranes composing the platelet organelles can be determined from both approaches, although STEM tomography offers a higher ∼3 nm isotropic pixel size, compared with ∼5 nm for SBF-SEM in the plane of the block face and ∼30 nm in the perpendicular direction. In this regard, we demonstrate that STEM tomography is advantageous for visualizing the platelet canalicular system, which consists of an interconnected network of narrow (∼50-100 nm) membranous cisternae. In contrast, SBF-SEM enables visualization of complete platelets, each of which extends ∼2 µm in minimum dimension, whereas BF-STEM tomography can typically only visualize approximately half of the platelet volume due to a rapid non-linear loss of signal in specimens of thickness greater than ∼1.5 µm. We also show that the limitations of each approach can be ameliorated by combining 3D and 2D measurements using a stereological approach.
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Huang YC, Gindele MB, Knaus J, Rao A, Gebauer D. On mechanisms of mesocrystal formation: magnesium ions and water environments regulate the crystallization of amorphous minerals. CrystEngComm 2018. [DOI: 10.1039/c8ce00241j] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Elucidating the emergence of crystalline superstructures from amorphous precursors, hydration environments and ionic constituents can guide transformation and structuration reactions towards distinct micro- and nano-structures.
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Affiliation(s)
- Yu-Chieh Huang
- Physical Chemistry
- Department of Chemistry
- Universitätsstr. 10
- University of Konstanz
- Konstanz 78464
| | - Maxim Benjamin Gindele
- Physical Chemistry
- Department of Chemistry
- Universitätsstr. 10
- University of Konstanz
- Konstanz 78464
| | - Jennifer Knaus
- Physical Chemistry
- Department of Chemistry
- Universitätsstr. 10
- University of Konstanz
- Konstanz 78464
| | - Ashit Rao
- Freiburg Institute for Advanced Studies
- Albert-Ludwigs-Universität Freiburg
- Freiburg 79104
- Germany
- University of Twente
| | - Denis Gebauer
- Physical Chemistry
- Department of Chemistry
- Universitätsstr. 10
- University of Konstanz
- Konstanz 78464
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Martino C, Costa C, Roccheri MC, Koop D, Scudiero R, Byrne M. Gadolinium perturbs expression of skeletogenic genes, calcium uptake and larval development in phylogenetically distant sea urchin species. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2018; 194:57-66. [PMID: 29156215 DOI: 10.1016/j.aquatox.2017.11.004] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2017] [Revised: 11/06/2017] [Accepted: 11/09/2017] [Indexed: 06/07/2023]
Abstract
Chelates of Gadolinium (Gd), a lanthanide metal, are employed as contrast agents for magnetic resonance imaging and are released into the aquatic environment where they are an emerging contaminant. We studied the effects of environmentally relevant Gd concentrations on the development of two phylogenetically and geographically distant sea urchin species: the Mediterranean Paracentrotus lividus and the Australian Heliocidaris tuberculata. We found a general delay of embryo development at 24h post-fertilization, and a strong inhibition of skeleton growth at 48h. Total Gd and Ca content in the larvae showed a time- and concentration-dependent increase in Gd, in parallel with a reduction in Ca. To investigate the impact of Gd on the expression of genes involved in the regulation of skeletogenesis, we performed comparative RT-PCR analysis and found a misregulation of several genes involved in the skeletogenic and left-right axis specification gene regulatory networks. Species-specific differences in the biomineralization response were evident, likely due to differences in the skeletal framework of the larvae and the amount of biomineral produced. Our results highlight the hazard of Gd for marine organisms.
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Affiliation(s)
- Chiara Martino
- Dipartimento Scienze e Tecnologie Biologiche Chimiche e Farmaceutiche, Università di Palermo, Viale delle Scienze, Ed. 16, 90128, Palermo, Italy; Consiglio Nazionale delle Ricerche, Istituto di Biomedicina e Immunologia Molecolare "Alberto Monroy", Via Ugo La Malfa 153, 90146, Palermo, Italy.
| | - Caterina Costa
- Consiglio Nazionale delle Ricerche, Istituto di Biomedicina e Immunologia Molecolare "Alberto Monroy", Via Ugo La Malfa 153, 90146, Palermo, Italy
| | - Maria Carmela Roccheri
- Dipartimento Scienze e Tecnologie Biologiche Chimiche e Farmaceutiche, Università di Palermo, Viale delle Scienze, Ed. 16, 90128, Palermo, Italy
| | - Demian Koop
- Department of Anatomy and Histology, F13, University of Sydney, NSW, Australia
| | - Rosaria Scudiero
- Dipartimento di Biologia, Università di Napoli Federico II, via Mezzocannone 8, 80134, Napoli, Italy
| | - Maria Byrne
- Department of Anatomy and Histology, F13, University of Sydney, NSW, Australia
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Mass T, Drake JL, Heddleston JM, Falkowski PG. Nanoscale Visualization of Biomineral Formation in Coral Proto-Polyps. Curr Biol 2017; 27:3191-3196.e3. [PMID: 29033329 DOI: 10.1016/j.cub.2017.09.012] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2017] [Revised: 07/11/2017] [Accepted: 09/06/2017] [Indexed: 11/16/2022]
Abstract
Calcium carbonate platforms produced by reef-building stony corals over geologic time are pervasive features around the world [1]; however, the mechanism by which these organisms produce the mineral is poorly understood (see review by [2]). It is generally assumed that stony corals precipitate calcium carbonate extracellularly as aragonite in a calcifying medium between the calicoblastic ectoderm and pre-existing skeleton, separated from the overlying seawater [2]. The calicoblastic ectoderm produces extracellular matrix (ECM) proteins, secreted to the calcifying medium [3-6], which appear to provide the nucleation, alteration, elongation, and inhibition mechanisms of the biomineral [7] and remain occluded and preserved in the skeleton [8-10]. Here we show in cell cultures of the stony coral Stylophora pistillata that calcium is concentrated in intracellular pockets that are subsequently exported from the cell where a nucleation process leads to the formation of extracellular aragonite crystals. Analysis of the growing crystals by lattice light-sheet microscopy suggests that the crystals elongate from the cells' surfaces outward.
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Affiliation(s)
- Tali Mass
- University of Haifa, Department of Marine Biology, The Leon H. Charney School of Marine Sciences, Multi Purpose Boulevard, Mt. Carmel, Haifa 3498838, Israel.
| | - Jeana L Drake
- Rutgers University, Department of Marine and Coastal Sciences, Dudley Road, New Brunswick, NJ 08901, USA
| | - John M Heddleston
- Howard Hughes Medical Institute Janelia Research Campus, Advanced Imaging Center, Helix Drive, Ashburn, VA 20147, USA
| | - Paul G Falkowski
- Rutgers University, Department of Marine and Coastal Sciences, Dudley Road, New Brunswick, NJ 08901, USA; Rutgers University, Department of Earth and Planetary Sciences, Taylor Road, Piscataway, NJ 08854, USA
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Abstract
Do corals form their skeletons by precipitation from solution or by attachment of amorphous precursor particles as observed in other minerals and biominerals? The classical model assumes precipitation in contrast with observed "vital effects," that is, deviations from elemental and isotopic compositions at thermodynamic equilibrium. Here, we show direct spectromicroscopy evidence in Stylophora pistillata corals that two amorphous precursors exist, one hydrated and one anhydrous amorphous calcium carbonate (ACC); that these are formed in the tissue as 400-nm particles; and that they attach to the surface of coral skeletons, remain amorphous for hours, and finally, crystallize into aragonite (CaCO3). We show in both coral and synthetic aragonite spherulites that crystal growth by attachment of ACC particles is more than 100 times faster than ion-by-ion growth from solution. Fast growth provides a distinct physiological advantage to corals in the rigors of the reef, a crowded and fiercely competitive ecosystem. Corals are affected by warming-induced bleaching and postmortem dissolution, but the finding here that ACC particles are formed inside tissue may make coral skeleton formation less susceptible to ocean acidification than previously assumed. If this is how other corals form their skeletons, perhaps this is how a few corals survived past CO2 increases, such as the Paleocene-Eocene Thermal Maximum that occurred 56 Mya.
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Endocytosis in primary mesenchyme cells during sea urchin larval skeletogenesis. Exp Cell Res 2017; 359:205-214. [PMID: 28782554 DOI: 10.1016/j.yexcr.2017.07.028] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2017] [Revised: 06/26/2017] [Accepted: 07/22/2017] [Indexed: 12/18/2022]
Abstract
The sea urchin larval embryo elaborates two calcitic endoskeletal elements called spicules. Spicules are synthesized by the primary mesenchyme cells (PMCs) and begin to form at early gastrula stage. It is known that the calcium comprising the spicules comes from the seawater and we wish to further consider the mode of calcium transport from the extracellular seawater to the PMCs and then onto the forming spicules. We used PMC in vitro cultures, calcein, fluorescently labeled dextran, and fluorescently labeled Wheat Germ Agglutinin (WGA) to track calcium transport from the seawater into PMCs and spicules and to determine how molecules from the surface of PMCs interact with the incoming calcium. Labeling of PMC endocytic vesicles and forming spicules by both calcein and fluorescently tagged dextran indicate that calcium is taken up from the seawater by endocytosis and directly incorporated into spicules. Calcein labeling studies also indicate that calcium from the extracellular seawater begins to be incorporated into spicules within 30min of uptake. In addition, we demonstrate that fluorescently labeled WGA and calcein are taken up by many of the same endocytic vesicles and are incorporated into growing spicules. These findings suggest that PMC specific surface molecules accompany calcium ions as they enter PMCs via endocytosis and are incorporated together in the growing spicule. Using anti-spicule matrix protein antibodies, we pinpoint a subset of spicule matrix proteins that may accompany calcium ions from the surface of the PMCs until they are incorporated into spicules. Msp130 is identified as one of these spicule matrix proteins.
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