Climate-driven oscillation of phosphorus and iron limitation in the North Pacific Subtropical Gyre

Phosphorus deficiency alleviates iron limitation in Synechocystis cyanobacteria through direct PhoB-mediated gene regulation

Iron and phosphorus are essential nutrients that exist at low concentrations in surface waters and may be co-limiting resources for phytoplankton growth. Here, we show that phosphorus deficiency increases the growth of iron-limited cyanobacteria (Synechocystis sp. PCC 6803) through a PhoB-mediated regulatory network. We find that PhoB, in addition to its well-recognized role in controlling phosphate homeostasis, also regulates key metabolic processes crucial for iron-limited cyanobacteria, including ROS detoxification and iron uptake. Transcript abundances of PhoB-targeted genes are enriched in samples from phosphorus-depleted seawater, and a conserved PhoB-binding site is widely present in the promoters of the target genes, suggesting that the PhoB-mediated regulation may be highly conserved. Our findings provide molecular insights into the responses of cyanobacteria to simultaneous iron/phosphorus nutrient limitation.

Growth and mortality of aerobic anoxygenic phototrophs in the North Pacific Subtropical Gyre

Aerobic anoxygenic phototrophic (AAP) bacteria harvest light energy using bacteriochlorophyll-containing reaction centers to supplement their mostly heterotrophic metabolism. While their abundance and growth have been intensively studied in coastal environments, much less is known about their activity in oligotrophic open ocean regions. Therefore, we combined in situ sampling in the North Pacific Subtropical Gyre, north of O'ahu island, Hawaii, with two manipulation experiments. Infra-red epifluorescence microscopy documented that AAP bacteria represented approximately 2% of total bacteria in the euphotic zone with the maximum abundance in the upper 50 m. They conducted active photosynthetic electron transport with maximum rates up to 50 electrons per reaction center per second. The in situ decline of bacteriochlorophyll concentration over the daylight period, an estimate of loss rates due to predation, indicated that the AAP bacteria in the upper 50 m of the water column turned over at rates of 0.75-0.90 d-1. This corresponded well with the specific growth rate determined in dilution experiments where AAP bacteria grew at a rate 1.05 ± 0.09 d-1. An amendment of inorganic nitrogen to obtain N:P = 32 resulted in a more than 10 times increase in AAP abundance over 6 days. The presented data document that AAP bacteria are an active part of the bacterioplankton community in the oligotrophic North Pacific Subtropical Gyre and that their growth was mostly controlled by nitrogen availability and grazing pressure.IMPORTANCEMarine bacteria represent a complex assembly of species with different physiology, metabolism, and substrate preferences. We focus on a specific functional group of marine bacteria called aerobic anoxygenic phototrophs. These photoheterotrophic organisms require organic carbon substrates for growth, but they can also supplement their metabolic needs with light energy captured by bacteriochlorophyll. These bacteria have been intensively studied in coastal regions, but rather less is known about their distribution, growth, and mortality in the oligotrophic open ocean. Therefore, we conducted a suite of measurements in the North Pacific Subtropical Gyre to determine the distribution of these organisms in the water column and their growth and mortality rates. A nutrient amendment experiment showed that aerobic anoxygenic phototrophs were limited by inorganic nitrogen. Despite this, they grew more rapidly than average heterotrophic bacteria, but their growth was balanced by intense grazing pressure.

What happens to biomass burning-emitted particles in the ocean? A laboratory experimental approach based on their tracers

Wildfires, controlled burns, and biofuel combustion (biomass burning or BB) are major contributors to particulate matter in the atmosphere and thus have an impact on climate, human health, and ecosystems. Once emitted, the particulate matter derived from BB can be taken up by the oceans. However, the fate and impact of BB in the marine biological carbon pump, and carbon cycle are largely unknown. This work presents the first attempt to investigate the bioavailability of two BB tracers, levoglucosan and galactosan, in seawater inoculated with marine prokaryotes. Levoglucosan and galactosan were incubated with a marine bacterial inoculum and monitored for six weeks under controlled laboratory conditions. Along with the anhydrosugar concentrations, multiple chemical and biological parameters were monitored over time. The results indicate that levoglucosan and galactosan can be assimilated by marine prokaryotes as their concentrations decreased by 97 ± 4 % and 36 ± 21 % (n = 3) of their initial values. However, this decrease occurred only after a 9 and 15 days from the beginning of the experiment, respectively. The decrease in the levoglucosan and galactosan concentrations was accompanied by an increase in both heterotrophic prokaryotic production, and abundance. These results demonstrate that these anhydrosugars have the potential to be assimilated by heterotrophic prokaryotes and thus contribute to the microbial food web functioning. Under our experimental conditions, levoglucosan exhibited a bacterial growth efficiency of 17 ± 5 % (n = 3), suggesting that most of the levoglucosan is mineralized into CO2. Prokaryotic diversity analyses revealed the predominance of a few bacterial genera from the Roseobacter clade that were selected after the addition of the anhydrosugars. The presence of this widespread marine bacterial clade reflects its ability to process semilabile compounds (here levoglucosan and galactosan) originating from BB and contribute to the dissolved organic matter pool in surface seawaters.

Non-cyanobacterial diazotrophs: global diversity, distribution, ecophysiology, and activity in marine waters

Biological dinitrogen (N2) fixation supplies nitrogen to the oceans, supporting primary productivity, and is carried out by some bacteria and archaea referred to as diazotrophs. Cyanobacteria are conventionally considered to be the major contributors to marine N2 fixation, but non-cyanobacterial diazotrophs (NCDs) have been shown to be distributed throughout ocean ecosystems. However, the biogeochemical significance of marine NCDs has not been demonstrated. This review synthesizes multiple datasets, drawing from cultivation-independent molecular techniques and data from extensive oceanic expeditions, to provide a comprehensive view into the diversity, biogeography, ecophysiology, and activity of marine NCDs. A NCD nifH gene catalog was compiled containing sequences from both PCR-based and PCR-free methods, identifying taxa for future studies. NCD abundances from a novel database of NCD nifH-based abundances were colocalized with environmental data, unveiling distinct distributions and environmental drivers of individual taxa. Mechanisms that NCDs may use to fuel and regulate N2 fixation in response to oxygen and fixed nitrogen availability are discussed, based on a metabolic analysis of recently available Tara Oceans expedition data. The integration of multiple datasets provides a new perspective that enhances understanding of the biology, ecology, and biogeography of marine NCDs and provides tools and directions for future research.

Characteristics and emissions of isoprene and other non-methane hydrocarbons in the Northwest Pacific Ocean and responses to atmospheric aerosol deposition

Field investigations in the Northwest Pacific Ocean were carried out to determine the distributions of marine and atmospheric non-methane hydrocarbons (NMHCs), sources and environmental effects. We also conducted deck incubation experiments to investigate the effects of atmospheric aerosol deposition on NMHCs production. The marine NMHCs displayed an increasing trend from the South Equatorial Current to the Oyashio Current. The enhanced phytoplankton biomass and dissolved organic materials (DOM) content in the Kuroshio-Oyashio Extension contributed significantly to isoprene and NMHCs production compared with those in tropical waters and the North Pacific subtropical gyre. The Northwest Pacific Ocean was a significant source of atmospheric NMHCs, with average sea-to-air fluxes of 28.0 ± 38.9, 65.2 ± 73.3, 21.0 ± 26.7, 48.7 ± 62.6, 12.7 ± 15.9, 14.2 ± 16.8, and 41.7 ± 80.4 nmol m^-2 d^-1 for ethane, ethylene, propane, propylene, i-butane, n-butane, and isoprene, respectively. Influenced by seawater release and OH radical consumption, the atmospheric NMHCs apart from isoprene displayed upward trends with increasing latitude. The deck incubation showed that the addition of aerosols and acidic aerosols significantly boosted phytoplankton biomass, altered community structure, and accelerated the production of isoprene. However, the other six NMHCs showed no obvious responses to atmospheric aerosol deposition in the incubation experiments. In summary, ocean current movements and atmospheric deposition could influence the production and release of isoprene in the Northwest Pacific Ocean.

Atmospheric nourishment of global ocean ecosystems

Over the vast open ocean, vital nutrients for phytoplankton growth in the sunlit surface layer are largely provided through physical transport from deep waters, but some nutrients are also provided through atmospheric deposition of desert dust. The extent and magnitude of dust-mediated effects on surface ocean ecosystems have been difficult to estimate globally. In this work, we use global satellite ocean color products to demonstrate widespread responses to atmospheric dust deposition across a diverse continuum of phytoplankton nutritional conditions. The observed responses vary regionally, with some areas exhibiting substantial changes in phytoplankton biomass, whereas in other areas, the response reflects a change in physiological status or health. Climate-driven changes in atmospheric aerosols will alter the relative importance of this nutrient source.

Ontology-driven analysis of marine metagenomics: what more can we learn from our data?

BACKGROUND

The proliferation of metagenomic sequencing technologies has enabled novel insights into the functional genomic potentials and taxonomic structure of microbial communities. However, cyberinfrastructure efforts to manage and enable the reproducible analysis of sequence data have not kept pace. Thus, there is increasing recognition of the need to make metagenomic data discoverable within machine-searchable frameworks compliant with the FAIR (Findability, Accessibility, Interoperability, and Reusability) principles for data stewardship. Although a variety of metagenomic web services exist, none currently leverage the hierarchically structured terminology encoded within common life science ontologies to programmatically discover data.

RESULTS

Here, we integrate large-scale marine metagenomic datasets with community-driven life science ontologies into a novel FAIR web service. This approach enables the retrieval of data discovered by intersecting the knowledge represented within ontologies against the functional genomic potential and taxonomic structure computed from marine sequencing data. Our findings highlight various microbial functional and taxonomic patterns relevant to the ecology of prokaryotes in various aquatic environments.

CONCLUSIONS

In this work, we present and evaluate a novel Semantic Web architecture that can be used to ask novel biological questions of existing marine metagenomic datasets. Finally, the FAIR ontology searchable data products provided by our API can be leveraged by future research efforts.

Nutrient uptake plasticity in phytoplankton sustains future ocean net primary production

Annually, marine phytoplankton convert approximately 50 billion tons of dissolved inorganic carbon to particulate and dissolved organic carbon, a portion of which is exported to depth via the biological carbon pump. Despite its important roles in regulating atmospheric carbon dioxide via carbon sequestration and in sustaining marine ecosystems, model-projected future changes in marine net primary production are highly uncertain even in the sign of the change. Here, using an Earth system model, we show that frugal utilization of phosphorus by phytoplankton under phosphate-stressed conditions can overcompensate the previously projected 21st century declines due to ocean warming and enhanced stratification. Our results, which are supported by observations from the Hawaii Ocean Time-series program, suggest that nutrient uptake plasticity in the subtropical ocean plays a key role in sustaining phytoplankton productivity and carbon export production in a warmer world.

Surface Ocean Biogeochemistry Regulates the Impact of Anthropogenic Aerosol Fe Deposition on the Cycling of Iron and Iron Isotopes in the North Pacific

Distinctively-light isotopic signatures associated with Fe released from anthropogenic activity have been used to trace basin-scale impacts. However, this approach is complicated by the way Fe cycle processes modulate oceanic dissolved Fe (dFe) signatures (δ56Fediss) post deposition. Here we include dust, wildfire, and anthropogenic aerosol Fe deposition in a global ocean biogeochemical model with active Fe isotope cycling, to quantify how anthropogenic Fe impacts surface ocean dFe and δ56Fediss. Using the North Pacific as a natural laboratory, the response of dFe, δ56Fediss, and primary productivity are spatially and seasonally variable and do not simply follow the footprint of atmospheric deposition. Instead, the effect of anthropogenic Fe is regulated by the biogeochemical regime, specifically the degree of Fe limitation and rates of primary production. Overall, we find that while δ56Fediss does trace anthropogenic input, the response is muted by fractionation during phytoplankton uptake, but amplified by other isotopically-light Fe sources.

Earth, Wind, Fire, and Pollution: Aerosol Nutrient Sources and Impacts on Ocean Biogeochemistry

A key Earth system science question is the role of atmospheric deposition in supplying vital nutrients to the phytoplankton that form the base of marine food webs. Industrial and vehicular pollution, wildfires, volcanoes, biogenic debris, and desert dust all carry nutrients within their plumes throughout the globe. In remote ocean ecosystems, aerosol deposition represents an essential new source of nutrients for primary production. The large spatiotemporal variability in aerosols from myriad sources combined with the differential responses of marine biota to changing fluxes makes it crucially important to understand where, when, and how much nutrients from the atmosphere enter marine ecosystems. This review brings together existing literature, experimental evidence of impacts, and new atmospheric nutrient observations that can be compared with atmospheric and ocean biogeochemistry modeling. We evaluate the contribution and spatiotemporal variability of nutrient-bearing aerosols from desert dust, wildfire, volcanic, and anthropogenic sources, including the organic component, deposition fluxes, and oceanic impacts.

A Forecasting and Prediction Methodology for Improving the Blue Economy Resilience to Climate Change in the Romanian Lower Danube Euroregion

European Union (EU) policy encourages the development of a blue economy (BE) by unlocking the full economic potential of oceans, seas, lakes, rivers and other water resources, especially in member countries in which it represents a low contribution to the national economy (under 1%). However, climate change represents a main barrier to fully realizing a BE. Enabling conditions that will support the sustainable development of a BE and increase its climate resiliency must be promoted. Romania has high potential to contribute to the development of the EU BE due to its geographic characteristics, namely the presence of the Danube Delta-Black Sea macrosystem, which is part of the Romanian Lower Danube Euroregion (RLDE). Aquatic living resources represent a sector which can significantly contribute to the growth of the BE in the RLDE, a situation which imposes restrictions for both halting biodiversity loss and maintaining the proper conditions to maximize the benefits of the existing macrosystem. It is known that climate change causes water quality problems, accentuates water level fluctuations and loss of biodiversity and induces the destruction of habitats, which eventually leads to fish stock depletion. This paper aims to develop an analytical framework based on multiple linear predictive and forecast models that offers cost-efficient tools for the monitoring and control of water quality, fish stock dynamics and biodiversity in order to strengthen the resilience and adaptive capacity of the BE of the RLDE in the context of climate change. The following water-dependent variables were considered: total nitrogen (TN); total phosphorus (TP); dissolved oxygen (DO); pH; water temperature (wt); and water level, all of which were measured based on a series of 26 physicochemical indicators associated with 4 sampling areas within the RLDE (Brăila, Galați, Tulcea and Sulina counties). Predictive models based on fish species catches associated with the Galati County Danube River Basin segment and the “Danube Delta” Biosphere Reserve Administration territory were included in the analytical framework to establish an efficient tool for monitoring fish stock dynamics and structures as well as identify methods of controlling fish biodiversity in the RLDE to enhance the sustainable development and resilience of the already-existing BE and its expansion (blue growth) in the context of aquatic environment climate variation. The study area reflects the integrated approach of the emerging BE, focused on the ocean, seas, lakes and rivers according to the United Nations Agenda. The results emphasized the vulnerability of the RLDE to climate change, a situation revealed by the water level, air temperature and water quality parameter trend lines and forecast models. Considering the sampling design applied within the RLDE, it can be stated that the Tulcea county Danube sector was less affected by climate change compared with the Galați county sector as confirmed by water TN and TP forecast analysis, which revealed higher increasing trends in Galați compared with Tulcea. The fish stock biodiversity was proven to be affected by global warming within the RLDE, since peaceful species had a higher upward trend compared with predatory species. Water level and air temperature forecasting analysis proved to be an important tool for climate change monitoring in the study area. The resulting analytical framework confirmed that time series methods could be used together with machine learning prediction methods to highlight their synergetic abilities for monitoring and predicting the impact of climate change on the marine living resources of the BE sector within the RLDE. The forecasting models developed in the present study were meant to be used as methods of revealing future information, making it possible for decision makers to adopt proper management solutions to prevent or limit the negative impacts of climate change on the BE. Through the identified independent variables, prediction models offer a solution for managing the dependent variables and the possibility of performing less cost-demanding aquatic environment monitoring activities.

Toward a versatile flow technique: Development and application of reverse flow dual-injection analysis (rFDIA) for determining dissolved iron redox species and soluble reactive phosphorus in seawater

A versatile flow analyzer that extended the features of reverse flow injection analysis (rFIA) was developed in this study and named reverse flow dual-injection analysis (rFDIA). Compared with typical rFIA, the analyzer requires less reagent and is more environmentally friendly, which has two injection valves and two reagent loops for the accurate and successive injection of two reagents. With a 2-m long liquid waveguide capillary cell (LWCC) and a spectrophotometer, the analyzer was applied to underway determination of dissolved iron redox species in estuarine and coastal waters. Detection limits of 0.18 and 0.20 nmol L^-1 were achieved for Fe(II) and Fe(II + III), respectively and a linear dynamic range of 0.5-450 nmol L^-1 was obtained for both Fe(II) and Fe(II + III). The sample throughput for the simultaneous measurement of Fe(II) and Fe(II + III) was 12 h^-1, and each analysis consumed only 8 mL sample, 520 μL ferrozine solution, and 260 μL ascorbic acid solution. The analyzer was also used to measure nanomolar amounts of soluble reactive phosphorus (SRP) in seawater. The detection limit and the linear dynamic range for the SRP assay were 0.5 nmol L^-1 and 1.5-850 nmol L^-1. For SRP determination, the sample throughput was 20 h^-1, and each analysis required 9 mL of sample, 130 μL of mixed reagent solution and 260 μL of ascorbic acid. The analytical results were reproducible, with a relative standard deviation of 1.4% (2.5 nmol L^-1, n = 10), 2.1% (2.5 nmol L^-1, n = 10), and 2.1% (10 nmol L^-1, n = 11) for Fe(II), Fe(II + III), and SRP, respectively.