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Marks JH, Bai X, Nikolayev AA, Gong Q, Zhu C, Kleimeier NF, Turner AM, Singh SK, Wang J, Yang J, Pan Y, Yang T, Mebel AM, Kaiser RI. Methanetriol─Formation of an Impossible Molecule. J Am Chem Soc 2024; 146:12174-12184. [PMID: 38629886 DOI: 10.1021/jacs.4c02637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/02/2024]
Abstract
Orthocarboxylic acids─organic molecules carrying three hydroxyl groups at the same carbon atom─have been distinguished as vital reactive intermediates by the atmospheric science and physical (organic) chemistry communities as transients in the atmospheric aerosol cycle. Predicted short lifetimes and their tendency to dehydrate to a carboxylic acid, free orthocarboxylic acids, signify one of the most elusive classes of organic reactive intermediates, with even the simplest representative methanetriol (CH(OH)3)─historically known as orthoformic acid─not previously been detected experimentally. Here, we report the first synthesis of the previously elusive methanetriol molecule in low-temperature mixed methanol (CH3OH) and molecular oxygen (O2) ices subjected to energetic irradiation. Supported by electronic structure calculations, methanetriol was identified in the gas phase upon sublimation via isomer-selective photoionization reflectron time-of-flight mass spectrometry combined with isotopic substitution studies and the detection of photoionization fragments. The first synthesis and detection of methanetriol (CH(OH)3) reveals its gas-phase stability as supported by a significant barrier hindering unimolecular decomposition. These findings progress our fundamental understanding of the chemistry and chemical bonding of methanetriol, hydroxyperoxymethane (CH3OOOH), and hydroxyperoxymethanol (CH2(OH)OOH), which are all prototype molecules in the oxidation chemistry of the atmosphere.
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Affiliation(s)
- Joshua H Marks
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
| | - Xilin Bai
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai 200062, P. R. China
| | | | - Qi'ang Gong
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai 200062, P. R. China
| | - Cheng Zhu
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
| | - N Fabian Kleimeier
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
| | - Andrew M Turner
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
| | - Santosh K Singh
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
| | - Jia Wang
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
| | - Jiuzhong Yang
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, P. R. China
| | - Yang Pan
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, P. R. China
| | - Tao Yang
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai 200062, P. R. China
- Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, Shanxi 030006, P. R. China
| | - Alexander M Mebel
- Department of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, United States
| | - Ralf I Kaiser
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
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Wang J, Marks JH, Fortenberry RC, Kaiser RI. Interstellar formation of glyceric acid [HOCH 2CH(OH)COOH]-The simplest sugar acid. SCIENCE ADVANCES 2024; 10:eadl3236. [PMID: 38478624 PMCID: PMC10936953 DOI: 10.1126/sciadv.adl3236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 02/08/2024] [Indexed: 03/17/2024]
Abstract
Glyceric acid [HOCH2CH(OH)COOH]-the simplest sugar acid-represents a key molecule in biochemical processes vital for metabolism in living organisms such as glycolysis. Although critically linked to the origins of life and identified in carbonaceous meteorites with abundances comparable to amino acids, the underlying mechanisms of its formation have remained elusive. Here, we report the very first abiotic synthesis of racemic glyceric acid via the barrierless radical-radical reaction of the hydroxycarbonyl radical (HOĊO) with 1,2-dihydroxyethyl (HOĊHCH2OH) radical in low-temperature carbon dioxide (CO2) and ethylene glycol (HOCH2CH2OH) ices. Using isomer-selective vacuum ultraviolet photoionization reflectron time-of-flight mass spectrometry, glyceric acid was identified in the gas phase based on the adiabatic ionization energies and isotopic substitution studies. This work reveals the key reaction pathways for glyceric acid synthesis through nonequilibrium reactions from ubiquitous precursor molecules, advancing our fundamental knowledge of the formation pathways of key biorelevant organics-sugar acids-in deep space.
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Affiliation(s)
- Jia Wang
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Joshua H. Marks
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Ryan C. Fortenberry
- Department of Chemistry and Biochemistry, University of Mississippi, University, MS 38677, USA
| | - Ralf I. Kaiser
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
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3
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Fortenberry RC. Quantum Chemistry and Astrochemistry: A Match Made in the Heavens. J Phys Chem A 2024; 128:1555-1565. [PMID: 38381079 DOI: 10.1021/acs.jpca.3c07601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2024]
Abstract
Quantum chemistry can uniquely answer astrochemical questions that no other technique can provide. Computations can be parallelized, automated, and left to run continuously providing exceptional molecular throughput that cannot be done through experimentation. Additionally, the granularity of the individual computations that are required of potential energy surfaces, reaction mechanism pathways, or other quantum chemically derived observables produces a unique mosaic that make up the larger whole. These pieces can be dissected for their individual contributions or evaluated in an ad hoc fashion for each of their roles in generating the larger whole. No other scientific approach is capable of reporting such fine-grained insights. Quantum chemistry also works from a bottom-up approach in providing properties directly from the desired molecule instead of a top-down perspective as required of experiment where molecules have to be linked to observed phenomena. Furthermore, modern quantum chemistry is well within the range of "chemical accuracy" and is approaching "spectroscopic accuracy." As such, the seemingly difficult questions asked by astrochemistry that would not be asked initially for any other application require quantum chemical reference data. While the results of quantum chemical computations are needed to interpret astrochemical observation, modeling, or laboratory experimentation, such hard questions, regardless of the original need to answer them, produce unique solutions. While questions in astrochemistry often require novel developments in and implementations of quantum chemistry as outlined herein, the applications of these solutions will stretch beyond astrochemistry and may yet impact fields much closer to Earth.
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Affiliation(s)
- Ryan C Fortenberry
- Department of Chemistry & Biochemistry, University of Mississippi, Oxford, Mississippi 38677-1848, United States
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Tang Y, Pu M, Lei M. Cyclopentadienone Diphosphine Ruthenium Complex: A Designed Catalyst for the Hydrogenation of Carbon Dioxide to Methanol. J Org Chem 2024; 89:2431-2439. [PMID: 38306607 DOI: 10.1021/acs.joc.3c02438] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2024]
Abstract
The development of homogeneous metal catalysts for the efficient hydrogenation of carbon dioxide (CO2) into methanol (CH3OH) remains a significant challenge. In this study, a new cyclopentadienone diphosphine ligand (CPDDP ligand) was designed, which could coordinate with ruthenium to form a Ru-CPDDP complex to efficiently catalyze the CO2-to-methanol process using dihydrogen (H2) as the hydrogen resource based on density functional theory (DFT) mechanistic investigation. This process consists of three catalytic cycles, stage I (the hydrogenation of CO2 to HCOOH), stage II (the hydrogenation of HCOOH to HCHO), and stage III (the hydrogenation of HCHO to CH3OH). The calculated free energy barriers for the hydrogen transfer (HT) steps of stage I, stage II, and stage III are 7.5, 14.5, and 3.5 kcal/mol, respectively. The most favorable pathway of the dihydrogen activation (DA) steps of three stages to regenerate catalytic species is proposed to be the formate-assisted DA step with a free energy barrier of 10.4 kcal/mol. The calculated results indicate that the designed Ru-CPDDP and Ru-CPDDPEt complexes could catalyze hydrogenation of CO2 to CH3OH (HCM) under mild conditions and that the transition-metal owning designed CPDDP ligand framework be one kind of promising potential efficient catalysts for HCM.
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Affiliation(s)
- Yanhui Tang
- State Key Laboratory of Chemical Resource Engineering, Institute of Computational Chemistry, College of Chemistry, Beijing University of Chemical Technology, Beijing 100029, P.R. China
- School of Materials Design and Engineering, Beijing Institute of Fashion Technology, Beijing 100029, P.R. China
| | - Min Pu
- State Key Laboratory of Chemical Resource Engineering, Institute of Computational Chemistry, College of Chemistry, Beijing University of Chemical Technology, Beijing 100029, P.R. China
| | - Ming Lei
- State Key Laboratory of Chemical Resource Engineering, Institute of Computational Chemistry, College of Chemistry, Beijing University of Chemical Technology, Beijing 100029, P.R. China
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Turner AM, Marks JH, Lechner JT, Klapötke TM, Sun R, Kaiser RI. Ultraviolet-Initiated Decomposition of Solid 1,1-Diamino-2,2-dinitroethylene (FOX-7). J Phys Chem A 2023; 127:7707-7717. [PMID: 37682229 DOI: 10.1021/acs.jpca.3c03215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/09/2023]
Abstract
FOX-7 (1,1-diamino-2,2-dinitroethylene) was photolyzed with 202 nm photons to probe reaction energies, leading to the decomposition of this energetic material and to compare results from irradiations using lower-energy 532 and 355 nm photons as well as higher-energy electrons. The photolysis occurred at 5 K to suppress thermal reactions, and the solid samples were monitored using Fourier transform infrared spectroscopy (FTIR), which observed carbon dioxide (CO2), carbon monoxide (CO), cyanide (CN-), and cyanate (OCN-) after irradiation. During warming to 300 K, subliming products were detected using electron-impact quadrupole mass spectrometry (EI-QMS) and photoionization time-of-flight mass spectrometry (PI-ReTOF-MS). Five products were observed in QMS: water (H2O), carbon monoxide (CO), nitric oxide (NO), carbon dioxide (CO2), and cyanogen (NCCN). The ReTOF-MS results showed overlap with electron irradiation products but also included three intermediates for the oxidation of ammonia and nitric oxide: hydroxylamine (NH2OH), nitrosamine (NH2NO), and the largest product at 76 amu with the proposed assignment of hydroxyurea (NH2C(O)NHOH). These results highlight the role of reactive oxygen intermediates and nitro-to-nitrite isomerization as key early reactions that lead to a diverse array of decomposition products.
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Affiliation(s)
- Andrew M Turner
- Department of Chemistry, University of Hawaii, Honolulu, Hawaii 96822, United States
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii, Honolulu, Hawaii 96822, United States
| | - Joshua H Marks
- Department of Chemistry, University of Hawaii, Honolulu, Hawaii 96822, United States
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii, Honolulu, Hawaii 96822, United States
| | - Jasmin T Lechner
- Department of Chemistry, Ludwig-Maximilian University of Munich, München 81377, Germany
| | - Thomas M Klapötke
- Department of Chemistry, Ludwig-Maximilian University of Munich, München 81377, Germany
| | - Rui Sun
- Department of Chemistry, University of Hawaii, Honolulu, Hawaii 96822, United States
| | - Ralf I Kaiser
- Department of Chemistry, University of Hawaii, Honolulu, Hawaii 96822, United States
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii, Honolulu, Hawaii 96822, United States
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6
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Wittstock G, Bäumer M, Dononelli W, Klüner T, Lührs L, Mahr C, Moskaleva LV, Oezaslan M, Risse T, Rosenauer A, Staubitz A, Weissmüller J, Wittstock A. Nanoporous Gold: From Structure Evolution to Functional Properties in Catalysis and Electrochemistry. Chem Rev 2023; 123:6716-6792. [PMID: 37133401 DOI: 10.1021/acs.chemrev.2c00751] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Nanoporous gold (NPG) is characterized by a bicontinuous network of nanometer-sized metallic struts and interconnected pores formed spontaneously by oxidative dissolution of the less noble element from gold alloys. The resulting material exhibits decent catalytic activity for low-temperature, aerobic total as well as partial oxidation reactions, the oxidative coupling of methanol to methyl formate being the prototypical example. This review not only provides a critical discussion of ways to tune the morphology and composition of this material and its implication for catalysis and electrocatalysis, but will also exemplarily review the current mechanistic understanding of the partial oxidation of methanol using information from quantum chemical studies, model studies on single-crystal surfaces, gas phase catalysis, aerobic liquid phase oxidation, and electrocatalysis. In this respect, a particular focus will be on mechanistic aspects not well understood, yet. Apart from the mechanistic aspects of catalysis, best practice examples with respect to material preparation and characterization will be discussed. These can improve the reproducibility of the materials property such as the catalytic activity and selectivity as well as the scope of reactions being identified as the main challenges for a broader application of NPG in target-oriented organic synthesis.
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Affiliation(s)
- Gunther Wittstock
- Carl von Ossietzky University of Oldenburg, School of Mathematics and Science, Institute of Chemistry, D-26111 Oldenburg, Germany
| | - Marcus Bäumer
- University of Bremen, Institute for Applied and Physical Chemistry, 28359 Bremen, Germany
- University of Bremen, MAPEX Center for Materials and Processes, 28359 Bremen, Germany
| | - Wilke Dononelli
- University of Bremen, MAPEX Center for Materials and Processes, 28359 Bremen, Germany
- University of Bremen, Bremen Center for Computational Materials Science, Hybrid Materials Interfaces Group, Am Fallturm 1, Bremen 28359, Germany
| | - Thorsten Klüner
- Carl von Ossietzky University of Oldenburg, School of Mathematics and Science, Institute of Chemistry, D-26111 Oldenburg, Germany
| | - Lukas Lührs
- Hamburg University of Technology, Institute of Materials Physics and Technology, 21703 Hamburg, Germany
| | - Christoph Mahr
- University of Bremen, MAPEX Center for Materials and Processes, 28359 Bremen, Germany
- University of Bremen, Institute of Solid State Physics, Otto Hahn Allee 1, 28359 Bremen, Germany
| | - Lyudmila V Moskaleva
- University of the Free State, Department of Chemistry, P.O. Box 339, Bloemfontein 9300, South Africa
| | - Mehtap Oezaslan
- Technical University of Braunschweig Institute of Technical Chemistry, Technical Electrocatalysis Laboratory, Franz-Liszt-Strasse 35a, 38106 Braunschweig, Germany
| | - Thomas Risse
- Freie Universität Berlin, Institute of Chemistry and Biochemistry, Arnimallee 22, 14195 Berlin, Germany
| | - Andreas Rosenauer
- University of Bremen, MAPEX Center for Materials and Processes, 28359 Bremen, Germany
- University of Bremen, Institute of Solid State Physics, Otto Hahn Allee 1, 28359 Bremen, Germany
| | - Anne Staubitz
- University of Bremen, MAPEX Center for Materials and Processes, 28359 Bremen, Germany
- University of Bremen, Institute for Organic and Analytical Chemistry, Leobener Strasse 7, D-28359 Bremen, Germany
| | - Jörg Weissmüller
- Hamburg University of Technology, Institute of Materials Physics and Technology, 21703 Hamburg, Germany
- Helmholtz-Zentrum Hereon, Institute of Materials Mechanics, 21502 Geesthacht, Germany
| | - Arne Wittstock
- University of Bremen, MAPEX Center for Materials and Processes, 28359 Bremen, Germany
- University of Bremen, Institute for Organic and Analytical Chemistry, Leobener Strasse 7, D-28359 Bremen, Germany
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7
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Wang C, Chen X, Liu Y, Huang T, Jiang S. Theoretical Study of the Gas-Phase Hydrolysis of Formaldehyde to Produce Methanediol and Its Implication to New Particle Formation. ACS OMEGA 2023; 8:15467-15478. [PMID: 37151514 PMCID: PMC10157852 DOI: 10.1021/acsomega.3c00770] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Accepted: 03/30/2023] [Indexed: 05/09/2023]
Abstract
Aldehydes were speculated to be important precursor species in new particle formation (NPF). The direct involvement of formaldehyde (CH2O) in sulfuric acid and water nucleation is negligible; however, whether its atmospheric hydrolysate, methanediol (CH2(OH)2), which contains two hydroxyl groups, participates in NPF is not known. This work investigates both CH2O hydrolysis and NPF from sulfuric acid and CH2(OH)2 with quantum chemistry calculations and atmospheric cluster dynamics modeling. Kinetic calculation shows that reaction rates of the gas-phase hydrolysis of CH2O catalyzed by sulfuric acid are 11-15 orders of magnitude faster than those of the naked path at 253-298 K. Based on structures and the calculated formation Gibbs free energies, the interaction between sulfuric acid/its dimer/its trimer and CH2(OH)2 is thermodynamically favorable, and CH2(OH)2 forms hydrogen bonds with sulfuric acid/its dimer/its trimer via two hydroxyl groups to stabilize clusters. Our further cluster kinetic calculations suggested that the particle formation rates of the system are higher than those of the binary system of sulfuric acid and water at ambient low sulfuric acid concentrations and low relative humidity. In addition, the formation rate is found to present a negative temperature dependence because evaporation rate constants contribute significantly to it. However, cluster growth is essentially limited by the weak formation of the largest clusters, which implies that other stabilizing vapors are required for stable cluster formation and growth.
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Affiliation(s)
- Chunyu Wang
- School
of Biological and Environmental Engineering, Chaohu University, Hefei 238024, Anhui, China
- Water
Environment Research Center, Chaohu University, Hefei 238024, Anhui, China
| | - Xiaoju Chen
- School
of Biological and Environmental Engineering, Chaohu University, Hefei 238024, Anhui, China
| | - Yirong Liu
- School
of Information Science and Technology, University
of Science and Technology of China, Hefei 230026, Anhui, China
| | - Teng Huang
- Laboratory
of Atmospheric Physico-Chemistry, Anhui
Institute of Optics & Fine Mechanics, Chinese Academy of Sciences, Hefei 230031, Anhui, China
| | - Shuai Jiang
- School
of Information Science and Technology, University
of Science and Technology of China, Hefei 230026, Anhui, China
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8
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Wang J, Marks JH, Turner AM, Mebel AM, Eckhardt AK, Kaiser RI. Gas-phase detection of oxirene. SCIENCE ADVANCES 2023; 9:eadg1134. [PMID: 36897943 PMCID: PMC10005165 DOI: 10.1126/sciadv.adg1134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Accepted: 02/08/2023] [Indexed: 06/18/2023]
Abstract
Oxirenes-highly strained 4π Hückel antiaromatic organics-have been recognized as key reactive intermediates in the Wolff rearrangement and in interstellar environments. Predicting short lifetimes and tendency toward ring opening, oxirenes are one of the most mysterious classes of organic transients, with the isolation of oxirene (c-C2H2O) having remained elusive. Here, we report on the preparation of oxirene in low-temperature methanol-acetaldehyde matrices upon energetic processing through isomerization of ketene (H2CCO) followed by resonant energy transfer of the internal energy of oxirene to the vibrational modes (hydroxyl stretching and bending, methyl deformation) of methanol. Oxirene was detected upon sublimation in the gas phase exploiting soft photoionization coupled with a reflectron time-of-flight mass spectrometry. These findings advance our fundamental understanding of the chemical bonding and stability of cyclic, strained molecules and afford a versatile strategy for the synthesis of highly ring-strained transients in extreme environments.
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Affiliation(s)
- Jia Wang
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Joshua H. Marks
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Andrew M. Turner
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Alexander M. Mebel
- Department of Chemistry and Biochemistry, Florida International University, Miami, FL 33199, USA
| | - André K. Eckhardt
- Lehrstuhl für Organische Chemie II, Ruhr-Universität Bochum, Bochum 44801, Germany
| | - Ralf I. Kaiser
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
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Hu Z, Di Q, Liu B, Li Y, He Y, Zhu Q, Xu Q, Dagaut P, Hansen N, Sarathy SM, Xing L, Truhlar DG, Wang Z. Elucidating the photodissociation fingerprint and quantifying the determination of organic hydroperoxides in gas-phase autoxidation. Proc Natl Acad Sci U S A 2023; 120:e2220131120. [PMID: 36848575 PMCID: PMC10013783 DOI: 10.1073/pnas.2220131120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2022] [Accepted: 01/12/2023] [Indexed: 03/01/2023] Open
Abstract
Hydroperoxides are formed in the atmospheric oxidation of volatile organic compounds, in the combustion autoxidation of fuel, in the cold environment of the interstellar medium, and also in some catalytic reactions. They play crucial roles in the formation and aging of secondary organic aerosols and in fuel autoignition. However, the concentration of organic hydroperoxides is seldom measured, and typical estimates have large uncertainties. In this work, we developed a mild and environmental-friendly method for the synthesis of alkyl hydroperoxides (ROOH) with various structures, and we systematically measured the absolute photoionization cross-sections (PICSs) of the ROOHs using synchrotron vacuum ultraviolet-photoionization mass spectrometry (SVUV-PIMS). A chemical titration method was combined with an SVUV-PIMS measurement to obtain the PICS of 4-hydroperoxy-2-pentanone, a typical molecule for combustion and atmospheric autoxidation ketohydroperoxides (KHPs). We found that organic hydroperoxide cations are largely dissociated by loss of OOH. This fingerprint was used for the identification and accurate quantification of the organic peroxides, and it can therefore be used to improve models for autoxidation chemistry. The synthesis method and photoionization dataset for organic hydroperoxides are useful for studying the chemistry of hydroperoxides and the reaction kinetics of the hydroperoxy radicals and for developing and evaluating kinetic models for the atmospheric autoxidation and combustion autoxidation of the organic compounds.
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Affiliation(s)
- Zhihong Hu
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui230029, P. R. China
| | - Qimei Di
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui230029, P. R. China
| | - Bingzhi Liu
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui230029, P. R. China
| | - Yanbo Li
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui230029, P. R. China
| | - Yunrui He
- Energy and Power Engineering Institute, Henan University of Science and Technology, Luoyang, Henan471003, China
| | - Qingbo Zhu
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui230029, P. R. China
| | - Qiang Xu
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui230029, P. R. China
| | - Philippe Dagaut
- CNRS, Institut National des Sciences de l’Ingénierie et des Systèmes, Institut de Combustion, Aérothermique, Réactivité et Environnement, Orléans45071, cedex 2, France
| | - Nils Hansen
- Combustion Research Facility, Sandia National Laboratories, Livermore, CA94551
| | - S. Mani Sarathy
- King Abdullah University of Science and Technology, Clean Combustion Research Center, Thuwal23955-6900, Saudi Arabia
| | - Lili Xing
- Energy and Power Engineering Institute, Henan University of Science and Technology, Luoyang, Henan471003, China
| | - Donald G. Truhlar
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, MN55455-0431
| | - Zhandong Wang
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui230029, P. R. China
- State Key Laboratory of Fire Science, University of Science and Technology of China, Hefei, Anhui230026, P. R. China
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10
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Guo M, Zhou S, Sun X. Room-Temperature Conversion of Methane to Methanediol by [FeO 2] . J Phys Chem Lett 2023; 14:1633-1640. [PMID: 36752636 DOI: 10.1021/acs.jpclett.2c03786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Inspired by the activities of P-450 enzyme and Rieske oxygenases in nature, in which the high-valent Fe-oxo complexes play a key role for oxidation of alkanes, the oxidation process of methane by the high-valent iron oxide cation [FeO2]+ has been explored by using Fourier transform-ion cyclotron resonance (FT-ICR) mass spectrometry complemented by high-level quantum chemical calculations. In contrast to the previously reported [FeO]+/CH4 and [Fe(O)OH]+/CH4 systems, which afford [FeOH]+ as the main product, the generation of Fe+ dominates the reaction of [FeO2]+ with CH4. Theoretical calculations suggest a novel "oxygen rebound" pathway for the liberation of methanediol. In particular, the inevitable valence increase of Fe prior to C-H activation is similar to the cytochrome P-450 mediated processes. To our best knowledge, this study provides the first example of methane activation by the high-valent Fe(V)-oxo species in the gas phase, which may thus bridge the gas-phase model and the condensed-phase biosystems.
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Affiliation(s)
- Mengdi Guo
- Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China
- Shandong Energy Institute, Qingdao 266101, China
| | - Shaodong Zhou
- College of Chemical and Biological Engineering, Zhejiang Provincial Key Laboratory of Advanced Chemical Engineering Manufacture Technology, Zhejiang University, Hangzhou 310027, China
- Institute of Zhejiang University─Quzhou, Zheda Road No. 99, Quzhou 324000, China
| | - Xiaoyan Sun
- Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China
- Shandong Energy Institute, Qingdao 266101, China
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Franke PR, Stanton JF. Rotamers of Methanediol: Composite Ab Initio Predictions of Structures, Frequencies, and Rovibrational Constants. J Phys Chem A 2023; 127:924-937. [PMID: 36657011 DOI: 10.1021/acs.jpca.2c06686] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Geminal diols are known to be important intermediates in atmospheric ozonolysis and the aerosol cycle. Recently, the simplest member of this class, methanediol, was interrogated in the gas phase with infrared spectroscopy. To aid in future spectroscopic investigations of methanediol, including in the interstellar medium, we report fundamental frequencies and rovibrational constants for the two rotamers of this molecule using ab initio composite methods along with vibrational perturbation theory. Sensitivity of the predictions to the level of theory and the treatment of anharmonic resonances are carefully assessed. The OH stretching harmonic frequencies of both rotamers are particularly sensitive to the level of theory. The CH stretches of the Cs rotamer are sensitive to the treatment of anharmonic resonances with VPT2-based effective Hamiltonian models. Equilibrium bond distances and harmonic frequencies are converged conservatively to within 0.0005 Å and 3 cm-1, respectively. The effect of tunneling on the rotational constants is investigated with a 2D variational calculation, based on a relaxed hydroxyl torsional potential energy surface. Tunneling is found to be negligible in the lower energy C2 rotamer but should modify the rotational constants of the Cs rotamer on the order of MHz, giving rise to rotational line splittings of the same order. The rovibrational constants of the Cs rotamer are dominated by hydroxyl torsional effects, and here we see evidence for the breakdown of vibrational perturbation theory.
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Affiliation(s)
- Peter R Franke
- Department of Chemistry, University of Florida, Gainesville, Florida32611, United States
| | - John F Stanton
- Department of Chemistry, University of Florida, Gainesville, Florida32611, United States
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12
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Haney OG, Westbrook BR, Santaloci TJ, Fortenberry RC. Red-Shifting the Excitation Energy of Carbonic Acid Clusters Via Nonminimum Structures. J Phys Chem A 2023; 127:489-494. [PMID: 36622286 DOI: 10.1021/acs.jpca.2c07589] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Nonminimum carbonic acid clusters provide excitation energies and oscillator strengths in line with observed ice-phase UV absorptions better than traditional optimized minima. This equation-of-motion coupled cluster quantum chemical analysis on carbonic acid monomers and dimers shows that shifts to the dihedral angle for the internal heavy atoms in the monomer produce UV electronic excitations close to 200 nm with oscillator strengths that would produce observable features. This τ(OCOO) dihedral is actually a relatively floppy motion unlike what is often expected for sp2 carbons and can be distorted by 30° away from equilibrium for an energy cost of only 11 kcal/mol. As this dihedral decreases beyond 30°, the excitation energies decrease further. The oscillator strengths do, as well, but only to a point. Hence, the lower-energy distortions of τ(OCOO) are sufficient to produce structures that exhibit excitation energies and oscillator strengths that would red-shift observed spectra of carbonic acid ices away from the highest UV absorption feature at 139 nm. Such data imply that colder temperatures (20 K) in the experimental treatment of carbonic acid ices are freezing these structures out after annealing, whereas the warmer temperature experiments (80 K) are not.
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Affiliation(s)
- Olivia G Haney
- Department of Chemistry & Biochemistry, Belhaven University, Jackson, Mississippi 39212, United States
| | - Brent R Westbrook
- Department of Chemistry & Biochemistry, University of Mississippi, University, Mississippi 38677-1848, United States
| | - Taylor J Santaloci
- Department of Chemistry & Biochemistry, University of Mississippi, University, Mississippi 38677-1848, United States
| | - Ryan C Fortenberry
- Department of Chemistry & Biochemistry, University of Mississippi, University, Mississippi 38677-1848, United States
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13
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Wang J, Marks JH, Turner AM, Nikolayev AA, Azyazov V, Mebel AM, Kaiser RI. Mechanistical study on the formation of hydroxyacetone (CH 3COCH 2OH), methyl acetate (CH 3COOCH 3), and 3-hydroxypropanal (HCOCH 2CH 2OH) along with their enol tautomers (prop-1-ene-1,2-diol (CH 3C(OH)CHOH), prop-2-ene-1,2-diol (CH 2C(OH)CH 2OH), 1-methoxyethen-1-ol (CH 3OC(OH)CH 2) and prop-1-ene-1,3-diol (HOCH 2CHCHOH)) in interstellar ice analogs. Phys Chem Chem Phys 2023; 25:936-953. [PMID: 36285574 DOI: 10.1039/d2cp03543j] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
We unravel, for the very first time, the formation pathways of hydroxyacetone (CH3COCH2OH), methyl acetate (CH3COOCH3), and 3-hydroxypropanal (HCOCH2CH2OH), as well as their enol tautomers within mixed ices of methanol (CH3OH) and acetaldehyde (CH3CHO) analogous to interstellar ices in the ISM exposed to ionizing radiation at ultralow temperatures of 5 K. Exploiting photoionization reflectron time-of-flight mass spectrometry (PI-ReToF-MS) and isotopically labeled ices, the reaction products were selectively photoionized allowing for isomer discrimination during the temperature-programmed desorption phase. Based on the distinct mass-to-charge ratios and ionization energies of the identified species, we reveal the formation pathways of hydroxyacetone (CH3COCH2OH), methyl acetate (CH3COOCH3), and 3-hydroxypropanal (HCOCH2CH2OH) via radical-radical recombination reactions and of their enol tautomers (prop-1-ene-1,2-diol (CH3C(OH)CHOH), prop-2-ene-1,2-diol (CH2C(OH)CH2OH), 1-methoxyethen-1-ol (CH3OC(OH)CH2) and prop-1-ene-1,3-diol (HOCH2CHCHOH)) via keto-enol tautomerization. To the best of our knowledge, 1-methoxyethen-1-ol (CH3OC(OH)CH2) and prop-1-ene-1,3-diol (HOCH2CHCHOH) are experimentally identified for the first time. Our findings help to constrain the formation mechanism of hydroxyacetone and methyl acetate detected within star-forming regions and suggest that the hitherto astronomically unobserved isomer 3-hydroxypropanal and its enol tautomers represent promising candidates for future astronomical searches. These enol tautomers may contribute to the molecular synthesis of biologically relevant molecules in deep space due to their nucleophilic character and high reactivity.
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Affiliation(s)
- Jia Wang
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA. .,Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Joshua H Marks
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA. .,Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Andrew M Turner
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA. .,Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Anatoliy A Nikolayev
- Lebedev Physical Institute, Samara 443011, Russia.,Samara National Research University, Samara 443086, Russia
| | | | - Alexander M Mebel
- Department of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, USA
| | - Ralf I Kaiser
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA. .,Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
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14
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Preparation of methanediamine (CH 2(NH 2) 2)-A precursor to nucleobases in the interstellar medium. Proc Natl Acad Sci U S A 2022; 119:e2217329119. [PMID: 36508671 PMCID: PMC9907108 DOI: 10.1073/pnas.2217329119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
Although methanediamine (CH2(NH2)2) has historically been the subject of theoretical scrutiny, it has never been isolated to date. Here, we report the preparation of methanediamine (CH2(NH2)2)-the simplest diamine. Low-temperature interstellar analog ices composed of ammonia and methylamine were exposed to energetic electrons which act as proxies for secondary electrons produced in the track of galactic cosmic rays. These experimental conditions, which simulate the conditions within cold molecular clouds, result in radical formation and initiate aminomethyl (ĊH2NH2) and amino ([Formula: see text]2) radical chemistry. Exploiting tunable photoionization reflectron time-of-flight mass spectrometry (PI-ReToF-MS) to make isomer-specific assignments, methanediamine was identified in the gas phase upon sublimation, while its isomer methylhydrazine (CH3NHNH2) was not observed. The molecular formula was confirmed to be CH6N2 through the use of isotopically labeled reactants. Methanediamine is the simplest molecule to contain the NCN moiety and could be a vital intermediate in the abiotic formation of heterocyclic and aromatic systems such as nucleobases, which all contain the NCN moiety.
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15
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Zhu C, Wang H, Medvedkov I, Marks J, Xu M, Yang J, Yang T, Pan Y, Kaiser RI. Exploitation of Synchrotron Radiation Photoionization Mass Spectrometry in the Analysis of Complex Organics in Interstellar Model Ices. J Phys Chem Lett 2022; 13:6875-6882. [PMID: 35861849 DOI: 10.1021/acs.jpclett.2c01628] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Unravelling the generation of complex organic molecules (COMs) on interstellar nanoparticles (grains) is essential in establishing predictive astrochemical reaction networks and recognizing evolution stages of molecular clouds and star-forming regions. The formation of COMs has been associated with the irradiation of interstellar ices by ultraviolet photons and galactic cosmic rays. Herein, we pioneer the first incorporation of synchrotron vacuum ultraviolet photoionization reflectron time-of-flight mass spectrometry (SVUV-PI-ReTOF-MS) in laboratory astrophysics simulation experiments to afford an isomer-selective identification of key COMs (ketene (H2C═CO); acetaldehyde (CH3CHO); vinyl alcohol (H2C═CHOH)) based on photoionization efficiency (PIE) curves of molecules desorbing from exposed carbon monoxide-methane (CO-CH4) ices. Our results demonstrate that the SVUV-PI-ReTOF-MS approach represents a versatile, rapid methodology for a comprehensive identification and explicit understanding of the complex organics produced in space simulation experiments. This methodology is expected to significantly improve the predictive nature of astrochemical models of complex organic molecules formed abiotically in deep space, including biorelated species linked to the origins-of-life topic.
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Affiliation(s)
- Cheng Zhu
- Department of Chemistry, University of Hawai'i at Ma̅noa, 2545 McCarthy Mall, Honolulu, Hawaii 96822, United States
| | - Hailing Wang
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai 200062, P.R. China
| | - Iakov Medvedkov
- Department of Chemistry, University of Hawai'i at Ma̅noa, 2545 McCarthy Mall, Honolulu, Hawaii 96822, United States
| | - Joshua Marks
- Department of Chemistry, University of Hawai'i at Ma̅noa, 2545 McCarthy Mall, Honolulu, Hawaii 96822, United States
| | - Minggao Xu
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei 230029, P.R. China
| | - Jiuzhong Yang
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei 230029, P.R. China
| | - Tao Yang
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai 200062, P.R. China
- Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, Shanxi 030006, P.R. China
| | - Yang Pan
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei 230029, P.R. China
| | - Ralf I Kaiser
- Department of Chemistry, University of Hawai'i at Ma̅noa, 2545 McCarthy Mall, Honolulu, Hawaii 96822, United States
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Davis MC, Garrett NR, Fortenberry RC. Confirmation of gaseous methanediol from state-of-the-art theoretical rovibrational characterization. Phys Chem Chem Phys 2022; 24:18552-18558. [PMID: 35904881 DOI: 10.1039/d2cp02076a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
High-level rovibrational characterization of methanediol, the simplest geminal diol, using state-of-the-art, purely ab initio techniques unequivocally confirms previously reported gas phase preparation of this simplest geminal diol in its C2 conformation. The F12-TZ-cCR and F12-DZ-cCR quartic force fields (QFFs) utilized in this work are among the largest coupled cluster-based anharmonic frequencies computed to date, and they match the experimental band origins of the spectral features in the 980-1100 cm-1 range to within 3 cm-1, representing a significant improvement over previous studies. The simulated spectrum also matches the experimental spectrum in the strong Q branch feature and qualitative shape of the 980-1100 cm-1 region. Additionally, the full set of rotational constants, anharmonic vibrational frequencies, and quartic and sextic distortion constants are provided for both the lowest energy C2 conformer as well as the slightly higher Cs conformer. Several vibrational modes have intensities of 60 km mol-1 or higher, facilitating potential astronomical or atmospheric detection of methanediol or further identification in laboratory work especially now that gas phase synthesis of this molecule has been established.
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Affiliation(s)
- Megan C Davis
- Department of Chemistry & Biochemistry, University of Mississippi, University, MS, 38677-1848, USA.
| | - Noah R Garrett
- Department of Chemistry & Biochemistry, University of Mississippi, University, MS, 38677-1848, USA.
| | - Ryan C Fortenberry
- Department of Chemistry & Biochemistry, University of Mississippi, University, MS, 38677-1848, USA.
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Abstract
The simplest geminal diol CH2(OH)2 serves as an important precursor to form atmospheric formic acid. CH2(OH)2 vapour can be generated by the evaporation of an aqueous formaldehyde solution, prepared by dissolving paraformaldehyde under reflux. Its rovibrational feature at 980-1100 cm-1 is consistent with the simulation and free of the intense interferences of H2O and CH2O.
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Affiliation(s)
- Yi-Fang Chen
- Department of Chemistry, National Tsing Hua University, 101, Sec. 2, Kuang-Fu Rd, Hsinchu 300044, Taiwan.
| | - Li-Kang Chu
- Department of Chemistry, National Tsing Hua University, 101, Sec. 2, Kuang-Fu Rd, Hsinchu 300044, Taiwan.
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Fischer TLL, Bödecker MADI, Zehnacker A, Mata RA, Suhm MA. Setting up the HyDRA blind challenge for the microhydration of organic molecules. Phys Chem Chem Phys 2022; 24:11442-11454. [DOI: 10.1039/d2cp01119k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The procedure leading to the first HyDRA blind challenge for the prediction of water donor stretching vibrations in monohydrates of organic molecules is described. A training set of 10 monohydrates...
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