Structure and Arrangement of Salivary Gland Chromosomes in Drosophila Species

Design principles of 3D epigenetic memory systems

Cells remember their identities, in part, by using epigenetic marks-chemical modifications placed along the genome. How can mark patterns remain stable over cell generations despite their constant erosion by replication and other processes? We developed a theoretical model that reveals that three-dimensional (3D) genome organization can stabilize epigenetic memory as long as (i) there is a large density difference between chromatin compartments, (ii) modifying "reader-writer" enzymes spread marks in three dimensions, and (iii) the enzymes are limited in abundance relative to their histone substrates. Analogous to an associative memory that encodes memory in neuronal connectivity, mark patterns are encoded in a 3D network of chromosomal contacts. Our model provides a unified account of diverse observations and reveals a key role of 3D genome organization in epigenetic memory.

XIV.—The Association of Non‐homologous Chromosomes in Corixidæ (Hemiptera‐Heteroptera)

Karyological studies on spermatogenesis in species of aquatic bugs of the family Corixidæ have brought to light several examples of an unusual type of chromosome behaviour during the course of meiosis. It is considered to be an association of non‐homologues in a manner unexampled in other animal species.

Isotopic probing of molecular oxygen activation at copper(I) sites

Copper-dioxygen (CuO2) adducts are frequently proposed as intermediates in enzymes, yet their electronic and vibrational structures have not always been understood. [Cu(eta1-O2)TMG3tren]+ (TMG3tren = 1,1,1-tris{2-[N2-(1,1,3,3-tetramethylguanidino)]ethyl}amine) features end-on (eta1) O2 coordination in the solid state. Described here is an investigation of the compound's solution properties by nuclear magnetic resonance spectroscopy, density functional calculations, and oxygen isotope effects. The study yields two major findings. First, [Cu(eta1-O2)TMG3tren]+ is paramagnetic due to a triplet electronic structure; this is in contrast to other copper compounds where O2 is bound in a side-on manner. Second, the oxygen equilibrium isotope effect upon O2 binding to copper(I) (18O EIE [triple bond] K(16O16O)/K(16O18O) = 1.0148 +/- 0.0012) is significantly larger than those determined for iron and cobalt eta1-O2 adducts. This result is suggested to reflect greater ionic (CuII-O2-I) character within the valence bond description. A revised interpretation of the physical origins of the 18O EIEs upon O2 binding to redox metals is also advanced along with experimental data that should be used as benchmarks for interpreting 18O kinetic isotope effects upon enzyme reactions.

Binding of Molecular O2 to Di- and Triligated [UO2]+

Gas-phase complexes containing dioxouranium(V) cations ([UO(2)](+)) ligated with two or three sigma-donating acetone ligands reacted with dioxygen to form [UO(2)(A)(2,3)(O(2))](+), where A is acetone. Collision-induced dissociation studies of [UO(2)(A)(3)(O(2))](+) showed initial loss of acetone, followed by elimination of O(2), which suggested that O(2) was bound more strongly than the third acetone ligand, but less strongly than the second. Similar behavior was observed for complexes in which water was substituted for acetone. Binding of dioxygen to [UO(2)](+) containing zero, one, or four ligands did not occur, nor did it occur for analogous ligated U(IV)O(2) or U(VI)O(2) ions. For example, only addition of acetone and/or H(2)O occurred for the U(VI) species [UO(2)OH](+), with the ligand addition cascade terminating in formation of [UO(2)OH(A)(3)](+). Similarly, the U(IV) species [UOOH](+) added donor ligands, which produced the mixed-ligand complex [UOOH(A)(3)(H(2)O)](+) as the preferred product at the longest reaction times accessible. Since dioxygen normally functions as an electron acceptor, an alternative mode for binding dioxygen to the cationic U(V)O(2) center is indicated that is dependent on the presence of an unpaired electron and donor ligands in the uranyl valence orbitals.

The bithorax complex of Drosophila melanogaster: Underreplication and morphology in polytene chromosomes

The level of polyteny of the Drosophila salivary gland chromosomes was determined throughout the chromosome region 89E1-4, the locus of the Bithorax Complex. A zone of underreplication spans the 300 kb of DNA from the Ubx to Abd-B loci. From the centromere proximal end of the complex, a 70-kb-long gradual decrease of polytenization starts with the Ubx transcription unit and, after a floor corresponding to the abd-A locus, raises gradually back to the maximum over 70 kb in the region of the Abd-B transcription unit. In flies carrying the mutation Suppressor of DNA Underreplication [Su(UR)ES], the underreplication of the Bithorax Complex is fully suppressed. In the wild type, the Bithorax Complex forms a weak point featuring thinner bands separated by clefts or constrictions. In Su(UR)ES strain in contrast, the 89E1-4 band looks like a single solid band consisting of homogenous dense material. We speculate that the wild-type Su(UR)ES protein hampers DNA replication of silenced domains and leads to their underreplication in salivary gland polytene chromosomes.

The bithorax complex of Drosophila melanogaster: Underreplication and morphology in polytene chromosomes

The level of polyteny of the Drosophila salivary gland chromosomes was determined throughout the chromosome region 89E1-4, the locus of the Bithorax Complex. A zone of underreplication spans the 300 kb of DNA from the Ubx to Abd-B loci. From the centromere proximal end of the complex, a 70-kb-long gradual decrease of polytenization starts with the Ubx transcription unit and, after a floor corresponding to the abd-A locus, raises gradually back to the maximum over 70 kb in the region of the Abd-B transcription unit. In flies carrying the mutation Suppressor of DNA Underreplication [Su(UR)ES], the underreplication of the Bithorax Complex is fully suppressed. In the wild type, the Bithorax Complex forms a weak point featuring thinner bands separated by clefts or constrictions. In Su(UR)ES strain in contrast, the 89E1-4 band looks like a single solid band consisting of homogenous dense material. We speculate that the wild-type Su(UR)ES protein hampers DNA replication of silenced domains and leads to their underreplication in salivary gland polytene chromosomes.

Orientation of interphase chromosomes as detected by Giemsa C-bands

The orientation of Giemsa C-bands has been studied in mitotic and interphase cells of Allium cepa. A sativum and of Aloe vera. The C-bands in these three species are located at the telomeres, secondary constriction region of the nucleolar chromosomes and the centromeric regions, respectively. Observations in A. cepa and Aloe indicate clearly that the interphase chromosomes are non-random in their orientation and possibly maintain their telophase configuration through the attachment of telomeres and perhaps of kinetochores with the nuclear membrane. Electron micrographs of onion cells also reveal that certain heterochromatic segments are associated with the nuclear membrane.--The nucleolar interstitial C-bands in A. sativum remain free in the nucleoplasm and may come close to each other due to heterochromatic attraction. Such a heterochromatic attraction is also evident between telomeric regions and between centromeres. However, a two by two attachment could not be noticed. A diagrammatic representation of the orientation of interphase chromosomes has been presented.

[Frequency of telomers in Drosophila melanogaster dependent on different modes of selection]

The frequencies of telomers were counted in chromosomes 3L and 3R in several strains of Drosophila melanogaster kept under different selection pressures for many generations. Observed frequencies were in most cases in good agreement with frequencies expected from Hardy-Weinberg-equilibria. Mode and direction of selection affected the frequencies of telomers on chromosome 3R. Equilibria of the telomer-structures were determined to a certain degree by different selection procedures. Terminal adhesions of 3L and 3R were more frequent when telomers were present.The main conclusion is that presence or absence of telomers are part of the genetic variability of populations, and that telomer frequencies are affected by selection in much the same way as other adaptive chromosome polymorphisms.

Morphology and development of the salivary glands and their chromosomes in the larvae of Anopheles stephensi sensu stricto

In the larvae of Anopheles stephensi s. s. five typically banded salivary chromosomes are present united proximally to a chromocentre. Maps have been constructed to illustrate their constant and characteristic banded pattern. Chromosome IIIR, however, has shown a variation in the form of a heterozygous inversion. The chromocentre is a small, fragile body, closely associated with the large nucleolus.The development of the salivary glands in the larva is by cell-growth. The chromocentre appears at first as a heteropycnotic "crescent", which soon gives place to a disc-shaped body. Later on in development the chromocentre loses both its heteropycnotic nature and compactness. The nucleolus persists until the time of histolysis of the glands, which begins at the distal end of the gland and gradually involves the more anterior regions. At the earliest observable stage the homologous chromatin elements constitute a tight coil. Full synapsis is preceded by a process of uncoiling accompanied by a chromomere-to-chromomere fusion. The rate of this process varies among different pairs of homologues and along different regions of the same pair. Synapsis is completed in the late third instar larva.RNA is localized in the cytoplasm and the nucleolus of the larval salivary gland cells. The chromosomes and the chromocentre include DNA. A faint reaction of the interband areas show that DNA is present in a diffuse state throughout the chromosomes.