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Zhu S, Oh YJ, Trepka EB, Chen X, Moore T. Dependence of Contextual Modulation in Macaque V1 on Interlaminar Signal Flow. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.04.18.590176. [PMID: 38659877 PMCID: PMC11042257 DOI: 10.1101/2024.04.18.590176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
In visual cortex, neural correlates of subjective perception can be generated by modulation of activity from beyond the classical receptive field (CRF). In macaque V1, activity generated by nonclassical receptive field (nCRF) stimulation involves different intracortical circuitry than activity generated by CRF stimulation, suggesting that interactions between neurons across V1 layers differ under CRF and nCRF stimulus conditions. Using Neuropixels probes, we measured border ownership modulation within large, local populations of V1 neurons. We found that neurons in single columns preferred the same side of objects located outside of the CRF. In addition, we found that cross-correlations between pairs of neurons situated across feedback/horizontal and input layers differed between CRF and nCRF stimulation. Furthermore, independent of the comparison with CRF stimulation, we observed that the magnitude of border ownership modulation increased with the proportion of information flow from feedback/horizontal layers to input layers. These results demonstrate that the flow of signals between layers covaries with the degree to which neurons integrate information from beyond the CRF.
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Wang J, Du X, Yao S, Li L, Tanigawa H, Zhang X, Roe AW. Mesoscale organization of ventral and dorsal visual pathways in macaque monkey revealed by 7T fMRI. Prog Neurobiol 2024; 234:102584. [PMID: 38309458 DOI: 10.1016/j.pneurobio.2024.102584] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Revised: 01/26/2024] [Accepted: 01/29/2024] [Indexed: 02/05/2024]
Abstract
In human and nonhuman primate brains, columnar (mesoscale) organization has been demonstrated to underlie both lower and higher order aspects of visual information processing. Previous studies have focused on identifying functional preferences of mesoscale domains in specific areas; but there has been little understanding of how mesoscale domains may cooperatively respond to single visual stimuli across dorsal and ventral pathways. Here, we have developed ultrahigh-field 7 T fMRI methods to enable simultaneous mapping, in individual macaque monkeys, of response in both dorsal and ventral pathways to single simple color and motion stimuli. We provide the first evidence that anatomical V2 cytochrome oxidase-stained stripes are well aligned with fMRI maps of V2 stripes, settling a long-standing controversy. In the ventral pathway, a systematic array of paired color and luminance processing domains across V4 was revealed, suggesting a novel organization for surface information processing. In the dorsal pathway, in addition to high quality motion direction maps of MT, MST and V3A, alternating color and motion direction domains in V3 are revealed. As well, submillimeter motion domains were observed in peripheral LIPd and LIPv. In sum, our study provides a novel global snapshot of how mesoscale networks in the ventral and dorsal visual pathways form the organizational basis of visual objection recognition and vision for action.
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Affiliation(s)
- Jianbao Wang
- Department of Neurosurgery of the Second Affiliated Hospital, Interdisciplinary Institute of Neuroscience and Technology, School of Medicine, Zhejiang University, Hangzhou, China; MOE Frontier Science Center for Brain Science and Brain-machine Integration, Zhejiang University, Hangzhou, China
| | - Xiao Du
- Department of Neurosurgery of the Second Affiliated Hospital, Interdisciplinary Institute of Neuroscience and Technology, School of Medicine, Zhejiang University, Hangzhou, China
| | - Songping Yao
- Department of Neurosurgery of the Second Affiliated Hospital, Interdisciplinary Institute of Neuroscience and Technology, School of Medicine, Zhejiang University, Hangzhou, China; Key Laboratory for Biomedical Engineering of Ministry of Education, College of Biomedical Engineering & Instrument Science, Zhejiang University, Hangzhou, China
| | - Lihui Li
- Department of Neurosurgery of the Second Affiliated Hospital, Interdisciplinary Institute of Neuroscience and Technology, School of Medicine, Zhejiang University, Hangzhou, China; Key Laboratory for Biomedical Engineering of Ministry of Education, College of Biomedical Engineering & Instrument Science, Zhejiang University, Hangzhou, China
| | - Hisashi Tanigawa
- Department of Neurosurgery of the Second Affiliated Hospital, Interdisciplinary Institute of Neuroscience and Technology, School of Medicine, Zhejiang University, Hangzhou, China; MOE Frontier Science Center for Brain Science and Brain-machine Integration, Zhejiang University, Hangzhou, China
| | - Xiaotong Zhang
- Department of Neurosurgery of the Second Affiliated Hospital, Interdisciplinary Institute of Neuroscience and Technology, School of Medicine, Zhejiang University, Hangzhou, China; Key Laboratory for Biomedical Engineering of Ministry of Education, College of Biomedical Engineering & Instrument Science, Zhejiang University, Hangzhou, China; MOE Frontier Science Center for Brain Science and Brain-machine Integration, Zhejiang University, Hangzhou, China; College of Electrical Engineering, Zhejiang University, Hangzhou, China.
| | - Anna Wang Roe
- Department of Neurosurgery of the Second Affiliated Hospital, Interdisciplinary Institute of Neuroscience and Technology, School of Medicine, Zhejiang University, Hangzhou, China; Key Laboratory for Biomedical Engineering of Ministry of Education, College of Biomedical Engineering & Instrument Science, Zhejiang University, Hangzhou, China; MOE Frontier Science Center for Brain Science and Brain-machine Integration, Zhejiang University, Hangzhou, China.
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Miranda M, Estrada-Rodriguez G, Estrada E. What Is in a Simplicial Complex? A Metaplex-Based Approach to Its Structure and Dynamics. ENTROPY (BASEL, SWITZERLAND) 2023; 25:1599. [PMID: 38136479 PMCID: PMC10742477 DOI: 10.3390/e25121599] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2023] [Revised: 11/24/2023] [Accepted: 11/28/2023] [Indexed: 12/24/2023]
Abstract
Geometric realization of simplicial complexes makes them a unique representation of complex systems. The existence of local continuous spaces at the simplices level with global discrete connectivity between simplices makes the analysis of dynamical systems on simplicial complexes a challenging problem. In this work, we provide some examples of complex systems in which this representation would be a more appropriate model of real-world phenomena. Here, we generalize the concept of metaplexes to embrace that of geometric simplicial complexes, which also includes the definition of dynamical systems on them. A metaplex is formed by regions of a continuous space of any dimension interconnected by sinks and sources that works controlled by discrete (graph) operators. The definition of simplicial metaplexes given here allows the description of the diffusion dynamics of this system in a way that solves the existing problems with previous models. We make a detailed analysis of the generalities and possible extensions of this model beyond simplicial complexes, e.g., from polytopal and cell complexes to manifold complexes, and apply it to a real-world simplicial complex representing the visual cortex of a macaque.
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Affiliation(s)
- Manuel Miranda
- Institute of Cross-Disciplinary Physics and Complex Systems, IFISC (UIB-CSIC), 07122 Palma de Mallorca, Spain;
| | | | - Ernesto Estrada
- Institute of Cross-Disciplinary Physics and Complex Systems, IFISC (UIB-CSIC), 07122 Palma de Mallorca, Spain;
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Hesse JK, Tsao DY. Functional modules for visual scene segmentation in macaque visual cortex. Proc Natl Acad Sci U S A 2023; 120:e2221122120. [PMID: 37523552 PMCID: PMC10410728 DOI: 10.1073/pnas.2221122120] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Accepted: 06/26/2023] [Indexed: 08/02/2023] Open
Abstract
Segmentation, the computation of object boundaries, is one of the most important steps in intermediate visual processing. Previous studies have reported cells across visual cortex that are modulated by segmentation features, but the functional role of these cells remains unclear. First, it is unclear whether these cells encode segmentation consistently since most studies used only a limited variety of stimulus types. Second, it is unclear whether these cells are organized into specialized modules or instead randomly scattered across the visual cortex: the former would lend credence to a functional role for putative segmentation cells. Here, we used fMRI-guided electrophysiology to systematically characterize the consistency and spatial organization of segmentation-encoding cells across the visual cortex. Using fMRI, we identified a set of patches in V2, V3, V3A, V4, and V4A that were more active for stimuli containing figures compared to ground, regardless of whether figures were defined by texture, motion, luminance, or disparity. We targeted these patches for single-unit recordings and found that cells inside segmentation patches were tuned to both figure-ground and borders more consistently across types of stimuli than cells in the visual cortex outside the patches. Remarkably, we found clusters of cells inside segmentation patches that showed the same border-ownership preference across all stimulus types. Finally, using a population decoding approach, we found that segmentation could be decoded with higher accuracy from segmentation patches than from either color-selective or control regions. Overall, our results suggest that segmentation signals are preferentially encoded in spatially discrete patches.
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Affiliation(s)
- Janis K. Hesse
- Department of Molecular and Cell Biology, University of California, Berkeley, CA94720
- Helen Wills Neuroscience Institute, University of California, Berkeley, CA94720
| | - Doris Y. Tsao
- Department of Molecular and Cell Biology, University of California, Berkeley, CA94720
- Helen Wills Neuroscience Institute, University of California, Berkeley, CA94720
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