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Dornheim T, Moldabekov ZA, Vorberger J. Nonlinear density response from imaginary-time correlation functions: Ab initio path integral Monte Carlo simulations of the warm dense electron gas. J Chem Phys 2021; 155:054110. [PMID: 34364322 DOI: 10.1063/5.0058988] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The ab initio path integral Monte Carlo (PIMC) approach is one of the most successful methods in quantum many-body theory. A particular strength of this method is its straightforward access to imaginary-time correlation functions (ITCFs). For example, the well-known density-density ITCF F(q, τ) allows one to estimate the linear response of a given system for all wave vectors q from a single simulation of the unperturbed system. Moreover, it constitutes the basis for the reconstruction of the dynamic structure factor S(q, ω)-a key quantity in state-of-the-art scattering experiments. In this work, we present analogous relations between the nonlinear density response in the quadratic and cubic order of the perturbation strength and generalized ITCFs measuring correlations between up to four imaginary-time arguments. As a practical demonstration of our new approach, we carry out simulations of the warm dense electron gas and find excellent agreement with previous PIMC results that had been obtained with substantially larger computational effort. In addition, we give a relation between a cubic ITCF and the triple dynamic structure factor S(q1, ω1; q2, ω2), which evokes the enticing possibility to study dynamic three-body effects on an ab initio level.
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Affiliation(s)
- Tobias Dornheim
- Center for Advanced Systems Understanding (CASUS), D-02826 Görlitz, Germany
| | | | - Jan Vorberger
- Helmholtz-Zentrum Dresden-Rossendorf (HZDR), D-01328 Dresden, Germany
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2
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Kinugawa K, Takemoto A. Quantum polyamorphism in compressed distinguishable helium-4. J Chem Phys 2021; 154:224503. [PMID: 34241222 DOI: 10.1063/5.0048539] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We demonstrate that two amorphous solid states can exist in 4He consisting of distinguishable Boltzmann atoms under compressed conditions. The isothermal compression of normal or supercritical fluid 4He was conducted at 3-25 K using the isobaric-isothermal path integral centroid molecular dynamics simulation. The compression of fluid first produced the low-dispersion amorphous (LDA) state possessing modest extension of atomic necklaces. Further isothermal compression up to the order of 10 kbar to 1 Mbar or an isobaric cooling of LDA induced the transition to the high-dispersion amorphous (HDA) state. The HDA was characterized by long quantum wavelengths of atoms extended over several Angstroms and the promotion of atomic residual diffusion. They were related to the quantum tunneling of atoms bestriding the potential saddle points in this glass. The change in pressure or temperature induced the LDA-HDA transition reversibly with hysteresis, while it resembled the coil-globule transition of classical polymers. The HDA had lower kinetic and higher Gibbs free energies than the LDA at close temperature. The HDA was absent at T ≥ 13 K, while the LDA-HDA transition pressure significantly decreased with lowering temperature. The LDA and HDA correspond to the trapped and tunneling regimes proposed by Markland et al. [J. Chem. Phys. 136, 074511 (2012)], respectively. The same reentrant behavior as they found was observed for the expansion factor of the quantum wavelength as well as for atomic diffusivity.
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Affiliation(s)
- Kenichi Kinugawa
- Division of Chemistry, Graduate School of Humanities and Sciences, Nara Women's University, Nara 630-8506, Japan
| | - Ayumi Takemoto
- Division of Chemistry, Graduate School of Humanities and Sciences, Nara Women's University, Nara 630-8506, Japan
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3
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Dornheim T, Vorberger J. Finite-size effects in the reconstruction of dynamic properties from ab initio path integral Monte Carlo simulations. Phys Rev E 2020; 102:063301. [PMID: 33466040 DOI: 10.1103/physreve.102.063301] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2020] [Accepted: 11/15/2020] [Indexed: 06/12/2023]
Abstract
We systematically investigate finite-size effects in the dynamic structure factor S(q,ω) of the uniform electron gas obtained via the analytic continuation of ab initio path integral Monte Carlo data for the imaginary-time density-density correlation function F(q,τ). Using the recent scheme by Dornheim et al. [Phys. Rev. Lett. 121, 255001 (2018)PRLTAO0031-900710.1103/PhysRevLett.121.255001], we find that the reconstructed spectra are not afflicted with any finite-size effects for as few as N=14 electrons both at warm dense matter (WDM) conditions and at the margins of the strongly correlated electron liquid regime. Our results further corroborate the high quality of our current description of the dynamic density response of correlated electrons, which is of high importance for many applications in WDM theory and beyond.
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Affiliation(s)
- Tobias Dornheim
- Center for Advanced Systems Understanding (CASUS), D-02826 Görlitz, Germany
| | - Jan Vorberger
- Helmholtz-Zentrum Dresden-Rossendorf (HZDR), D-01328 Dresden, Germany
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Berta D, Ferenc D, Bakó I, Madarász Á. Nuclear Quantum Effects from the Analysis of Smoothed Trajectories: Pilot Study for Water. J Chem Theory Comput 2020; 16:3316-3334. [PMID: 32268067 PMCID: PMC7304866 DOI: 10.1021/acs.jctc.9b00703] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
![]()
Nuclear quantum effects
have significant contributions to thermodynamic
quantities and structural properties; furthermore, very expensive
methods are necessary for their accurate computation. In most calculations,
these effects, for instance, zero-point energies, are simply neglected
or only taken into account within the quantum harmonic oscillator
approximation. Herein, we present a new method, Generalized Smoothed
Trajectory Analysis, to determine nuclear quantum effects from molecular
dynamics simulations. The broad applicability is demonstrated with
the examples of a harmonic oscillator and different states of water.
Ab initio molecular dynamics simulations have been performed for ideal
gas up to the temperature of 5000 K. Classical molecular dynamics
have been carried out for hexagonal ice, liquid water, and vapor at
atmospheric pressure. With respect to the experimental heat capacity,
our method outperforms previous calculations in the literature in
a wide temperature range at lower computational cost than other alternatives.
Dynamic and structural nuclear quantum effects of water are also discussed.
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Affiliation(s)
- Dénes Berta
- Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar Tudósok Körútja 2, H-1117 Budapest, Hungary.,Department of Chemistry, Kings College London, 7 Trinity Street, SE1 1DB London, United Kingdom
| | - Dávid Ferenc
- Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar Tudósok Körútja 2, H-1117 Budapest, Hungary
| | - Imre Bakó
- Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar Tudósok Körútja 2, H-1117 Budapest, Hungary
| | - Ádám Madarász
- Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar Tudósok Körútja 2, H-1117 Budapest, Hungary
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Nagashima H, Tsuda S, Tsuboi N, Hayashi AK, Tokumasu T. A molecular dynamics study of nuclear quantum effect on diffusivity of hydrogen molecule. J Chem Phys 2017; 147:024501. [PMID: 28711051 DOI: 10.1063/1.4991732] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In this paper, the nuclear quantum effect of the hydrogen molecule on its diffusivity was analyzed using the molecular dynamics (MD) method. The centroid MD (CMD) method was applied to reproduce the time evolution of the molecules. The diffusion coefficient of hydrogen was calculated using the Green-Kubo method over a wide temperature region, and the temperature dependence of the quantum effect of the hydrogen molecule on its diffusivity was addressed. The calculated results were compared with classical MD results based on the principle of corresponding state (PCS). It was confirmed that the difference in the diffusion coefficient calculated in the CMD and classical MD methods was small, and the PCS appears to be satisfied on the temperature dependence of the diffusion coefficient, even though the quantum effect of the hydrogen molecules was taken into account. It was clarified that this result did not suggest that the quantum effect on the diffusivity of the hydrogen molecule was small but that the two changes in the intermolecular interaction of hydrogen due to the quantum effect offset each other. Moreover, it was found that this tendency was related to the temperature dependence of the ratio of the kinetic energy of the quantum fluctuational motion to the classical kinetic energy.
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Affiliation(s)
- H Nagashima
- Department of Mechanical Systems Engineering, University of the Ryukuys, Okinawa, Senbaru, Nishihara-cho, Okinawa 903-0213, Japan
| | - S Tsuda
- Department of Mechanical Engineering, Kyushu University, Fukuoka 819-0395, Japan
| | - N Tsuboi
- Department of Mechanical and Control Engineering, Kyushu Institute of Technology, Kitakyushu 804-8550, Japan
| | - A K Hayashi
- Department of Mechanical Engineering, Aoyama Gakuin University, Sagamihara 229-8558, Japan
| | - T Tokumasu
- Institute of Fluid Science, Tohoku University, Sendai 980-8577, Japan
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7
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Ke Y, Zhao Y. An extension of stochastic hierarchy equations of motion for the equilibrium correlation functions. J Chem Phys 2017; 146:214105. [PMID: 28576086 PMCID: PMC5453806 DOI: 10.1063/1.4984260] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2017] [Accepted: 05/16/2017] [Indexed: 11/14/2022] Open
Abstract
A traditional stochastic hierarchy equations of motion method is extended into the correlated real-time and imaginary-time propagations, in this paper, for its applications in calculating the equilibrium correlation functions. The central idea is based on a combined employment of stochastic unravelling and hierarchical techniques for the temperature-dependent and temperature-free parts of the influence functional, respectively, in the path integral formalism of the open quantum systems coupled to a harmonic bath. The feasibility and validity of the proposed method are justified in the emission spectra of homodimer compared to those obtained through the deterministic hierarchy equations of motion. Besides, it is interesting to find that the complex noises generated from a small portion of real-time and imaginary-time cross terms can be safely dropped to produce the stable and accurate position and flux correlation functions in a broad parameter regime.
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Affiliation(s)
- Yaling Ke
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Collaborative Innovation Center of Chemistry for Energy Materials, and Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, People's Republic of China
| | - Yi Zhao
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Collaborative Innovation Center of Chemistry for Energy Materials, and Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, People's Republic of China
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8
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Marsalek O, Markland TE. Ab initio molecular dynamics with nuclear quantum effects at classical cost: Ring polymer contraction for density functional theory. J Chem Phys 2016; 144:054112. [DOI: 10.1063/1.4941093] [Citation(s) in RCA: 69] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Ondrej Marsalek
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
| | - Thomas E. Markland
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
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9
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Song L, Shi Q. Calculation of correlated initial state in the hierarchical equations of motion method using an imaginary time path integral approach. J Chem Phys 2015; 143:194106. [DOI: 10.1063/1.4935799] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Affiliation(s)
- Linze Song
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory for Structural Chemistry of Unstable and Stable Species, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun, Beijing 100190, China
| | - Qiang Shi
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory for Structural Chemistry of Unstable and Stable Species, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun, Beijing 100190, China
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Kowalczyk P, Terzyk AP, Gauden PA, Furmaniak S, Kaneko K, Miller TF. Nuclear Quantum Effects in the Layering and Diffusion of Hydrogen Isotopes in Carbon Nanotubes. J Phys Chem Lett 2015; 6:3367-3372. [PMID: 26270239 DOI: 10.1021/acs.jpclett.5b01545] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Although recent experimental studies have demonstrated that H2 and D2 molecules wet the inner surface of supergrowth carbon nanotubes at low temperatures, characterization of the structural and dynamical properties in this regime is challenging. This Letter presents a theoretical study of self-diffusion in pure and binary H2, D2, and T2 contact monolayer films formed on the inner surface of a carbon nanotube. Our results show that monolayer formation and self-diffusion both in pure hydrogen isotopes and in H2/T2 and H2/D2 isotope mixtures is impacted by nuclear quantum effects, suggesting potential applications of carbon nanotubes for the separation of hydrogen isotopes.
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Affiliation(s)
- Piotr Kowalczyk
- School of Engineering and Information Technology, Murdoch University , Perth, Western Australia 6150, Australia
| | - Artur P Terzyk
- Faculty of Chemistry, Physicochemistry of Carbon Materials Research Group, Nicolaus Copernicus University in Toruń , Gagarin Street 7, 87-100 Toruń, Poland
| | - Piotr A Gauden
- Faculty of Chemistry, Physicochemistry of Carbon Materials Research Group, Nicolaus Copernicus University in Toruń , Gagarin Street 7, 87-100 Toruń, Poland
| | - Sylwester Furmaniak
- Faculty of Chemistry, Physicochemistry of Carbon Materials Research Group, Nicolaus Copernicus University in Toruń , Gagarin Street 7, 87-100 Toruń, Poland
| | - Katsumi Kaneko
- Center for Energy and Environmental Science, Shinshu University , Nagano 380-8553, Japan
| | - Thomas F Miller
- Division of Chemistry and Chemical Engineering, California Institute of Technology , Pasadena, California 91125, United States
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12
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Chen X. The rigorous stochastic matrix multiplication scheme for the calculations of reduced equilibrium density matrices of open multilevel quantum systems. J Chem Phys 2014. [DOI: 10.1063/1.4870496] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
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13
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Videla PE, Rossky PJ, Laria D. Nuclear quantum effects on the structure and the dynamics of [H2O]8 at low temperatures. J Chem Phys 2013; 139:174315. [DOI: 10.1063/1.4827935] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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14
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Kowalczyk P, Gauden PA, Terzyk AP, Pantatosaki E, Papadopoulos GK. Constant Pressure Path Integral Gibbs Ensemble Monte Carlo Method. J Chem Theory Comput 2013; 9:2922-9. [PMID: 26583975 DOI: 10.1021/ct400110c] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We present the implementation of a real-space constant pressure path integral Gibbs ensemble Monte Carlo (CP-PIGEMC) method for the simulation of one-component fluid consists of distinguishable quantum particles (henceforth referred to as Boltzmannons) in an external potential field at finite temperatures. We apply this simulation method to study the para-H2 adsorption in NaX zeolite at 77 K and pressures up to 100 bar. We present a new set of effective solid-fluid parameters optimized for path integral simulations of hydrogen isotope adsorption and separation in synthetic zeolites. The agreement among CP-PIGEMC, experiment, and the path integral grand canonical Monte Carlo method (PIGCMC) is very good, even at high pressures. CP-PIGEMC is a particularly useful method for simulation of one-component quantum fluid composed of Boltzmannons at finite temperatures, when the chemical potential is difficult to measure or calculate explicitly.
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Affiliation(s)
- Piotr Kowalczyk
- Nanochemistry Research Institute, Department of Chemistry, Curtin University of Technology , P.O. Box U1987, Perth, 6845 Western Australia, Australia
| | - Piotr A Gauden
- Department of Chemistry, Physicochemistry of Carbon Materials Research Group, N. Copernicus University , Gagarin St. 7, 87-100 Torun, Poland
| | - Artur P Terzyk
- Department of Chemistry, Physicochemistry of Carbon Materials Research Group, N. Copernicus University , Gagarin St. 7, 87-100 Torun, Poland
| | - Evangelia Pantatosaki
- School of Chemical Engineering, National Technical University of Athens , 9 Heroon Polytechniou Street, 157 80 Athens, Greece
| | - George K Papadopoulos
- School of Chemical Engineering, National Technical University of Athens , 9 Heroon Polytechniou Street, 157 80 Athens, Greece
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15
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Habershon S, Manolopoulos DE, Markland TE, Miller TF. Ring-Polymer Molecular Dynamics: Quantum Effects in Chemical Dynamics from Classical Trajectories in an Extended Phase Space. Annu Rev Phys Chem 2013; 64:387-413. [DOI: 10.1146/annurev-physchem-040412-110122] [Citation(s) in RCA: 448] [Impact Index Per Article: 40.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Scott Habershon
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom;
| | - David E. Manolopoulos
- Physical and Theoretical Chemistry Laboratory, University of Oxford, Oxford OX1 3QZ, United Kingdom;
| | - Thomas E. Markland
- Department of Chemistry, Stanford University, Stanford, California 94305;
| | - Thomas F. Miller
- Department of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125;
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16
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Wilner EY, Levy TJ, Rabani E. Analytical continuation approaches to electronic transport: The resonant level model. J Chem Phys 2012; 137:214107. [DOI: 10.1063/1.4768674] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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18
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Nagashima H, Tokumasu T, Tsuda SI, Tsuboi N, Koshi M, Hayashi AK. Limits of classical molecular simulation on the estimation of thermodynamic properties of cryogenic hydrogen. MOLECULAR SIMULATION 2012. [DOI: 10.1080/08927022.2010.548383] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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19
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Markland TE, Morrone JA, Miyazaki K, Berne BJ, Reichman DR, Rabani E. Theory and simulations of quantum glass forming liquids. J Chem Phys 2012; 136:074511. [DOI: 10.1063/1.3684881] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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20
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MAKRI NANCY, NAKAYAMA AKIRA, WRIGHT NICHOLASJ. FORWARD-BACKWARD SEMICLASSICAL SIMULATION OF DYNAMICAL PROCESSES IN LIQUIDS. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2011. [DOI: 10.1142/s0219633604001112] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Forward-backward semiclassical dynamics (FBSD) provides a practical methodology for including quantum mechanical effects in classical trajectory simulations of polyatomic systems. FBSD expressions for time-dependent expectation values or correlation functions take the form of phase space integrals with respect to trajectory initial conditions, weighted by the coherent state transform of a corrected density operator. Quantization through a discretized path integral representation of the Boltzmann operator ensures a proper treatment of zero point energy effects and of imaginary components in finite-temperature correlation functions, and extension to systems obeying Bose statistics is possible. Accelerated convergence is achieved via Monte Carlo or molecular dynamics sampling techniques and through the construction of improved imaginary time propagators. The accuracy of the methodology is demonstrated on several model systems, including models of Bose and Fermi particles. Applications to liquid argon, neon and para-hydrogen are presented.
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Affiliation(s)
- NANCY MAKRI
- Department of Chemistry, University of Illinois, 601 S. Goodwin Avenue, Urbana, Illinois 61801, USA
| | - AKIRA NAKAYAMA
- Department of Chemistry, University of Illinois, 601 S. Goodwin Avenue, Urbana, Illinois 61801, USA
| | - NICHOLAS J. WRIGHT
- Department of Chemistry, University of Illinois, 601 S. Goodwin Avenue, Urbana, Illinois 61801, USA
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21
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Kletenik-Edelman O, Reichman DR, Rabani E. On the mode-coupling treatment of collective density fluctuations for quantum liquids: Para-hydrogen and normal liquid helium. J Chem Phys 2011; 134:044528. [DOI: 10.1063/1.3521478] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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22
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Kowalczyk P, Gauden PA, Terzyk AP, Furmaniak S. Quantum fluctuations increase the self-diffusive motion of para-hydrogen in narrow carbon nanotubes. Phys Chem Chem Phys 2011; 13:9824-30. [DOI: 10.1039/c1cp20184k] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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23
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Makri N. Forward–backward semiclassical and quantum trajectory methods for time correlation functions. Phys Chem Chem Phys 2011; 13:14442-52. [DOI: 10.1039/c0cp02374d] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Kletenik-Edelman O, Rabani E, Reichman DR. Analytic continuation average spectrum method for transport in quantum liquids. Chem Phys 2010. [DOI: 10.1016/j.chemphys.2010.01.012] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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25
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Paesani F, Voth GA. A quantitative assessment of the accuracy of centroid molecular dynamics for the calculation of the infrared spectrum of liquid water. J Chem Phys 2010; 132:014105. [DOI: 10.1063/1.3291212] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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26
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Habershon S, Manolopoulos DE. Zero point energy leakage in condensed phase dynamics: An assessment of quantum simulation methods for liquid water. J Chem Phys 2009; 131:244518. [DOI: 10.1063/1.3276109] [Citation(s) in RCA: 108] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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27
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Liu J, Miller WH. A simple model for the treatment of imaginary frequencies in chemical reaction rates and molecular liquids. J Chem Phys 2009; 131:074113. [DOI: 10.1063/1.3202438] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
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28
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Kowalczyk P, Gauden PA, Terzyk AP, Furmaniak S. Frequency-Dependent Diffusion Constant of Quantum Fluids from Path Integral Monte Carlo and Tikhonov’s Regularizing Functional. J Chem Theory Comput 2009; 5:1990-6. [DOI: 10.1021/ct900215q] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Piotr Kowalczyk
- Applied Physics, Royal Melbourne Institute of Technology University, GPO Box 2476 V, Victoria 3001, Australia and Department of Chemistry, Physicochemistry of Carbon Materials Research Group, Nicolaus Copernicus University, Gagarin St. 7, 87-100 Torun, Poland
| | - Piotr A. Gauden
- Applied Physics, Royal Melbourne Institute of Technology University, GPO Box 2476 V, Victoria 3001, Australia and Department of Chemistry, Physicochemistry of Carbon Materials Research Group, Nicolaus Copernicus University, Gagarin St. 7, 87-100 Torun, Poland
| | - Artur P. Terzyk
- Applied Physics, Royal Melbourne Institute of Technology University, GPO Box 2476 V, Victoria 3001, Australia and Department of Chemistry, Physicochemistry of Carbon Materials Research Group, Nicolaus Copernicus University, Gagarin St. 7, 87-100 Torun, Poland
| | - Sylwester Furmaniak
- Applied Physics, Royal Melbourne Institute of Technology University, GPO Box 2476 V, Victoria 3001, Australia and Department of Chemistry, Physicochemistry of Carbon Materials Research Group, Nicolaus Copernicus University, Gagarin St. 7, 87-100 Torun, Poland
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29
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Bukhman E, Makri N. Mixed Quantum and Forward−Backward Semiclassical Dynamics. J Phys Chem A 2009; 113:7183-8. [DOI: 10.1021/jp809741x] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ed Bukhman
- Department of Chemistry, University of Illinois, Urbana, Illinois 61801
| | - Nancy Makri
- Department of Chemistry, University of Illinois, Urbana, Illinois 61801
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30
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Reichman DR, Rabani E. Analytic continuation average spectrum method for quantum liquids. J Chem Phys 2009; 131:054502. [DOI: 10.1063/1.3185728] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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31
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Direct Monte Carlo evaluation of real-time quantum correlation functions using single-step propagators. Chem Phys Lett 2009. [DOI: 10.1016/j.cplett.2008.11.057] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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32
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Pérez A, Tuckerman ME, Müser MH. A comparative study of the centroid and ring-polymer molecular dynamics methods for approximating quantum time correlation functions from path integrals. J Chem Phys 2009; 130:184105. [DOI: 10.1063/1.3126950] [Citation(s) in RCA: 86] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
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33
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Liu J, Miller WH. Linearized semiclassical initial value time correlation functions with maximum entropy analytic continuation. J Chem Phys 2008; 129:124111. [PMID: 19045010 DOI: 10.1063/1.2981065] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jian Liu
- Department of Chemistry and K. S. Pitzer Center for Theoretical Chemistry, University of California, Berkeley, California 94720-1460, USA
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Egorov SA, Larrégaray P. Absorption and emission lineshapes and ultrafast solvation dynamics of NO in parahydrogen. J Chem Phys 2008; 128:244502. [DOI: 10.1063/1.2943316] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
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35
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Liu J, Miller WH. Test of the consistency of various linearized semiclassical initial value time correlation functions in application to inelastic neutron scattering from liquid para-hydrogen. J Chem Phys 2008; 128:144511. [DOI: 10.1063/1.2889945] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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36
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Hone TD, Poulsen JA, Rossky PJ, Manolopoulos DE. Comparison of Approximate Quantum Simulation Methods Applied to Normal Liquid Helium at 4 K. J Phys Chem B 2007; 112:294-300. [DOI: 10.1021/jp075022n] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Tyler D. Hone
- Center for Computational Molecular Science, Institute for Computational Engineering and Sciences and Department of Chemistry and Biochemistry, University of Texas at Austin, Austin, Texas 78712
| | - Jens A. Poulsen
- Physical Chemistry, Göteborg University, S-412-96, Göteborg, Sweden
| | - Peter J. Rossky
- Center for Computational Molecular Science, Institute for Computational Engineering and Sciences and Department of Chemistry and Biochemistry, University of Texas at Austin, Austin, Texas 78712
| | - David E. Manolopoulos
- Physical and Theoretical Chemistry Laboratory, Oxford University, South Parks Road, Oxford OX1 3QZ, United Kingdom
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37
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Habershon S, Braams BJ, Manolopoulos DE. Quantum mechanical correlation functions, maximum entropy analytic continuation, and ring polymer molecular dynamics. J Chem Phys 2007; 127:174108. [DOI: 10.1063/1.2786451] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
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38
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Liu J, Miller WH. Linearized semiclassical initial value time correlation functions using the thermal Gaussian approximation: Applications to condensed phase systems. J Chem Phys 2007; 127:114506. [PMID: 17887856 DOI: 10.1063/1.2774990] [Citation(s) in RCA: 81] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The linearized approximation to the semiclassical initial value representation (LSC-IVR) has been used together with the thermal Gaussian approximation (TGA) (TGA/LSC-IVR) [J. Liu and W. H. Miller, J. Chem. Phys. 125, 224104 (2006)] to simulate quantum dynamical effects in realistic models of two condensed phase systems. This represents the first study of dynamical properties of the Ne(13) Lennard-Jones cluster in its liquid-solid phase transition region (temperature from 4 to 14 K). Calculation of the force autocorrelation function shows considerable differences from that given by classical mechanics, namely that the cluster is much more mobile (liquidlike) than in the classical case. Liquid para-hydrogen at two thermodynamic state points (25 and 14 K under nearly zero external pressure) has also been studied. The momentum autocorrelation function obtained from the TGA/LSC-IVR approach shows very good agreement with recent accurate path integral Monte Carlo results at 25 K [A. Nakayama and N. Makri, J. Chem. Phys. 125, 024503 (2006)]. The self-diffusion constants calculated by the TGA/LSC-IVR are in reasonable agreement with those from experiment and from other theoretical calculations. These applications demonstrate the TGA/LSC-IVR to be a practical and versatile method for quantum dynamics simulations of condensed phase systems.
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Affiliation(s)
- Jian Liu
- Department of Chemistry and K. S. Pitzer Center for Theoretical Chemistry, University of California, Berkeley, California 94720-1460, USA
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39
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Venkataraman C, Miller WH. Chemical reaction rates using the semiclassical Van Vleck initial value representation. J Chem Phys 2007; 126:094104. [PMID: 17362101 DOI: 10.1063/1.2567200] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A semiclassical initial value representation formulation using the Van Vleck [Proc. Natl. Acad. Sci. U.S.A. 14, 178 (1928)] propagator has been used to calculate the flux correlation function and thereby reaction rate constants. This Van Vleck formulation of the flux-flux correlation function is computationally as simple as the classical Wigner [Trans. Faraday Soc. 34, 29 (1938)] model. However, unlike the latter, it has the ability to capture quantum interference/coherence effects. Classical trajectories are evolved starting from the dividing surface that separates reactants and products, and are evolved negatively in time. This formulation has been tested on model problems ranging from the Eckart barrier, double well to the collinear H+H2.
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40
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Navrotskaya I, Geva E. Vibrational Energy Relaxation Rates of H2 and D2 in Liquid Argon via the Linearized Semiclassical Method. J Phys Chem A 2006; 111:460-7. [PMID: 17228894 DOI: 10.1021/jp066243g] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The vibrational energy relaxation (VER) rates for H2 and D2 in liquid argon (T=152 K, rho=1.45x1022 cm-3) are calculated using the linearized semiclassical (LSC) method (J. Phys. Chem. 2003, 107, 9059, 9070). The calculation is based on Fermi's golden rule. The VER rate constant is expressed in terms of the quantum-mechanical force-force correlation function, which is then estimated using the LSC method. A local harmonic approximation (LHA) is employed in order to compute the multidimensional Wigner integrals underlying the LSC approximation. The H2-Ar and D2-Ar interactions are described by the three-body potential of Bissonette et al. (J. Phys. Chem. A 1996, 105, 2639). The LHA-LSC-based VER rate constants for both D2 and H2 are found to be about 2-3 orders of magnitude slower than those obtained experimentally. However, their ratio agrees quantitatively with the corresponding experimental result. In contrast, the classical VER rate constants are found to be 8-9 orders of magnitude slower than those obtained experimentally, and their ratio is found to be qualitatively different from the corresponding experimental result.
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Affiliation(s)
- Irina Navrotskaya
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109-1055, USA
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41
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Braams BJ, Manolopoulos DE. On the short-time limit of ring polymer molecular dynamics. J Chem Phys 2006; 125:124105. [PMID: 17014164 DOI: 10.1063/1.2357599] [Citation(s) in RCA: 123] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We examine the short-time accuracy of a class of approximate quantum dynamical techniques that includes the centroid molecular dynamics (CMD) and ring polymer molecular dynamics (RPMD) methods. Both of these methods are based on the path integral molecular dynamics (PIMD) technique for calculating the exact static equilibrium properties of quantum mechanical systems. For Kubo-transformed real-time correlation functions involving operators that are linear functions of positions or momenta, the RPMD and (adiabatic) CMD approximations differ only in the choice of the artificial mass matrix of the system of ring polymer beads that is employed in PIMD. The obvious ansatz for a general method of this type is therefore to regard the elements of the PIMD (or Parrinello-Rahman) mass matrix as an adjustable set of parameters that can be chosen to improve the accuracy of the resulting approximation. We show here that this ansatz leads uniquely to the RPMD approximation when the criterion that is used to select the mass matrix is the short-time accuracy of the Kubo-transformed correlation function. In particular, we show that the leading error in the RPMD position autocorrelation function is O(t(8)) and the error in the velocity autocorrelation function is O(t(6)), for a general anharmonic potential. The corresponding errors in the CMD approximation are O(t(6)) and O(t(4)), respectively.
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Affiliation(s)
- Bastiaan J Braams
- Department of Mathematics and Computer Science, Emory University, Atlanta, GA 30332, USA
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42
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Poulsen JA, Nyman G, Rossky PJ. Feynman−Kleinert Linearized Path Integral (FK-LPI) Algorithms for Quantum Molecular Dynamics, with Application to Water and He(4). J Chem Theory Comput 2006; 2:1482-91. [DOI: 10.1021/ct600167s] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Affiliation(s)
- Jens Aage Poulsen
- Physical Chemistry, Göteborg University, S-412-96, Göteborg, Sweden, and Institute for Theoretical Chemistry, Department of Chemistry and Biochemistry, University of Texas at Austin, Austin, Texas 78712
| | - Gunnar Nyman
- Physical Chemistry, Göteborg University, S-412-96, Göteborg, Sweden, and Institute for Theoretical Chemistry, Department of Chemistry and Biochemistry, University of Texas at Austin, Austin, Texas 78712
| | - Peter J. Rossky
- Physical Chemistry, Göteborg University, S-412-96, Göteborg, Sweden, and Institute for Theoretical Chemistry, Department of Chemistry and Biochemistry, University of Texas at Austin, Austin, Texas 78712
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43
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Kim H, Rossky PJ. Evaluation of quantum correlation functions from classical data: Anharmonic models. J Chem Phys 2006; 125:074107. [PMID: 16942322 DOI: 10.1063/1.2274412] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The previously introduced method of evaluating quantum mechanical time correlation functions using as input only classical simulation data is generalized and applied to two anharmonic model systems, as a further test. The quantum correction approach utilizes the relation between a general quantum correlation function and its classical analog. For the tested models, we obtain numerical results of nonlinear correlation functions with comparable accuracy to that of the centroid molecular dynamics method, although the present method is much simpler to implement and not limited to real valued quantum correlation functions.
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Affiliation(s)
- Hyojoon Kim
- Chemical Physics Theory Group, Department of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada.
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44
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Nakayama A, Makri N. Symmetrized correlation function for liquidpara-hydrogen using complex-time pair-product propagators. J Chem Phys 2006; 125:24503. [PMID: 16848588 DOI: 10.1063/1.2209682] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We present a simple and efficient method for calculating symmetrized time correlation functions of neat quantum fluids. Using the pair-product approximation to each complex-time quantum mechanical propagator, symmetrized correlation functions are written in terms of a double integral for each degree of freedom with a purely positive integrand. At moderate temperatures and densities, where the pair-product approximation to the Boltzmann operator is sufficiently accurate, the method leads to quantitative results for the early time part of the correlation function. The method is tested extensively on liquid para-hydrogen at 25 K and used to obtain accurate quantum mechanical results for the initial 0.2 ps segment of the symmetrized velocity autocorrelation function of this system, as well as the incoherent dynamic structure factor at certain momentum transfer values.
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Affiliation(s)
- Akira Nakayama
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
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Abstract
We applied the quantum path integral Monte Carlo method for the study of (para-H)N (N = 5-33) clusters at T = 2 K, exploring static and dynamic order, which originates from the effects of zero-point energy, kinetic energy, and thermal fluctuations in quantum clusters. Information on dynamic structure was inferred from the asymptotic tails of the cage correlation function calculated from the centroid Monte Carlo trajectory. The centroid cage correlation function decays to zero for large clusters (N = 15-33), manifesting the interchange of molecules between different solvation shells, with statistically diminishing back interchange. Further evidence for the floppiness of para-hydrogen clusters emerges from the Monte Carlo evolution of the centroid of a tagged molecule, which exhibits significant changes in the list of its first and second solvation shells due to the interchange of molecules between these shells.
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Affiliation(s)
- Eran Rabani
- School of Chemistry, The Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv 69978, Israel.
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46
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Hone TD, Rossky PJ, Voth GA. A comparative study of imaginary time path integral based methods for quantum dynamics. J Chem Phys 2006; 124:154103. [PMID: 16674214 DOI: 10.1063/1.2186636] [Citation(s) in RCA: 117] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The recently introduced approximate many-body quantum simulation method, ring polymer molecular dynamics (RPMD), is compared to the centroid molecular dynamics method (CMD). Comparisons of simulation results for liquid para-hydrogen at two state points and liquid ortho-deuterium at one state point are presented. The calculated quantum correlation functions for the two methods are shown to be in good agreement with one another for a large portion of the time spectrum. However, as the quantum mechanical nature of the system increases, RPMD is less accurate in predicting the kinetic energy of the system than is CMD. A simplified and highly efficient algorithm is proposed which largely corrects this deficiency.
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Affiliation(s)
- Tyler D Hone
- Institute for Theoretical Chemistry, Department of Chemistry and Biochemistry, University of Texas at Austin, Austin, Texas 78712, USA
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47
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Fujisaki H, Zhang Y, Straub JE. Time-dependent perturbation theory for vibrational energy relaxation and dephasing in peptides and proteins. J Chem Phys 2006; 124:144910. [PMID: 16626248 DOI: 10.1063/1.2191038] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Without invoking the Markov approximation, we derive formulas for vibrational energy relaxation (VER) and dephasing for an anharmonic system oscillator using a time-dependent perturbation theory. The system-bath Hamiltonian contains more than the third order coupling terms since we take a normal mode picture as a zeroth order approximation. When we invoke the Markov approximation, our theory reduces to the Maradudin-Fein formula which is used to describe the VER properties of glass and proteins. When the system anharmonicity and the renormalization effect due to the environment vanishes, our formulas reduce to those derived by and Mikami and Okazaki [J. Chem. Phys. 121, 10052 (2004)] invoking the path-integral influence functional method with the second order cumulant expansion. We apply our formulas to VER of the amide I mode of a small amino-acid like molecule, N-methylacetamide, in heavy water.
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Affiliation(s)
- Hiroshi Fujisaki
- Department of Chemistry, Boston University, Boston, Massachusetts 02215, USA.
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48
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Craig IR, Manolopoulos DE. Inelastic neutron scattering from liquid para-hydrogen by ring polymer molecular dynamics. Chem Phys 2006. [DOI: 10.1016/j.chemphys.2005.07.012] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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49
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50
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Molecular dynamics with quantum statistics: time correlation functions and weakly bound nano-clusters. Theor Chem Acc 2005. [DOI: 10.1007/s00214-005-0065-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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