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Schmitt O, Eipert P, Schwanke S, Lessmann F, Meinhardt J, Beier J, Kadir K, Karnitzki A, Sellner L, Klünker AC, Ruß F, Jenssen J. Connectome verification: inter-rater and connection reliability of tract-tracing-based intrinsic hypothalamic connectivity. Brief Bioinform 2019; 20:1944-1955. [PMID: 29897426 DOI: 10.1093/bib/bby048] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2018] [Revised: 05/09/2018] [Indexed: 11/12/2022] Open
Abstract
MOTIVATION Structural connectomics supports understanding aspects of neuronal dynamics and brain functions. Conducting metastudies of tract-tracing publications is one option to generate connectome databases by collating neuronal connectivity data. Meanwhile, it is a common practice that the neuronal connections and their attributes of such retrospective data collations are extracted from tract-tracing publications manually by experts. As the description of tract-tracing results is often not clear-cut and the documentation of interregional connections is not standardized, the extraction of connectivity data from tract-tracing publications could be complex. This might entail that different experts interpret such non-standardized descriptions of neuronal connections from the same publication in variable ways. Hitherto, no investigation is available that determines the variability of extracted connectivity information from original tract-tracing publications. A relatively large variability of connectivity information could produce significant misconstructions of adjacency matrices with faults in network and graph analyzes. The objective of this study is to investigate the inter-rater and inter-observation variability of tract-tracing-based documentations of neuronal connections. To demonstrate the variability of neuronal connections, data of 16 publications which describe neuronal connections of subregions of the hypothalamus have been assessed by way of example. RESULTS A workflow is proposed that allows detecting variability of connectivity at different steps of data processing in connectome metastudies. Variability between three blinded experts was found by comparing the connection information in a sample of 16 publications that describe tract-tracing-based neuronal connections in the hypothalamus. Furthermore, observation scores, matrix visualizations of discrepant connections and weight variations in adjacency matrices are analyzed. AVAILABILITY The resulting data and software are available at http://neuroviisas.med.uni-rostock.de/neuroviisas.shtml.
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Affiliation(s)
- Oliver Schmitt
- Department of Anatomy, University of Rostock, Gertrudenstr. 9, 18057 Rostock, Germany
| | - Peter Eipert
- Department of Anatomy, University of Rostock, Gertrudenstr. 9, 18057 Rostock, Germany
| | - Sebastian Schwanke
- Department of Anatomy, University of Rostock, Gertrudenstr. 9, 18057 Rostock, Germany
| | - Felix Lessmann
- Department of Anatomy, University of Rostock, Gertrudenstr. 9, 18057 Rostock, Germany
| | - Jennifer Meinhardt
- Department of Anatomy, University of Rostock, Gertrudenstr. 9, 18057 Rostock, Germany
| | - Julia Beier
- Department of Anatomy, University of Rostock, Gertrudenstr. 9, 18057 Rostock, Germany
| | - Kanar Kadir
- Department of Anatomy, University of Rostock, Gertrudenstr. 9, 18057 Rostock, Germany
| | - Adrian Karnitzki
- Department of Anatomy, University of Rostock, Gertrudenstr. 9, 18057 Rostock, Germany
| | - Linda Sellner
- Department of Anatomy, University of Rostock, Gertrudenstr. 9, 18057 Rostock, Germany
| | - Ann-Christin Klünker
- Department of Anatomy, University of Rostock, Gertrudenstr. 9, 18057 Rostock, Germany
| | - Frauke Ruß
- Department of Anatomy, University of Rostock, Gertrudenstr. 9, 18057 Rostock, Germany
| | - Jörg Jenssen
- Department of Anatomy, University of Rostock, Gertrudenstr. 9, 18057 Rostock, Germany
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Craft S. The Role of Insulin Dysregulation in Aging and Alzheimer’s Disease. DIABETES, INSULIN AND ALZHEIMER'S DISEASE 2010. [DOI: 10.1007/978-3-642-04300-0_8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
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Mathison S, Nagilla R, Kompella UB. Nasal route for direct delivery of solutes to the central nervous system: fact or fiction? J Drug Target 1998; 5:415-41. [PMID: 9783675 DOI: 10.3109/10611869808997870] [Citation(s) in RCA: 122] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
During this century, several investigators reported that certain viruses, metals, drugs, and other solutes could bypass systemic circulation and enter the brain and/or cerebrospinal fluid directly following nasal administration. Although evidence clearly suggests that the olfactory epithelium and its olfactory cells play a major role, little is known about the mechanisms of direct transport of solutes into the brain. An overview of what is known about these mechanisms may aid in further research in this field, including studies of direct drug delivery to the central nervous system. This review, in addition to summarizing the literature to date, clearly describes the intricate association of the anatomical features involved in direct entry of solutes into the brain following nasal administration. To aid in the understanding of the possible routes a solute can take after nasal administration, the anatomy of the olfactory epithelium and surrounding tissues is described, and a detailed scheme delineating the emerging pathways is presented. Techniques used in delineating these pathways and studies supporting a particular pathway are discussed in greater detail. Finally, some factors influencing the direct transport of solutes to the cerebrospinal fluid and brain are summarized.
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Affiliation(s)
- S Mathison
- Department of Chemistry, Auburn University, AL 36849-5503, USA
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Burd GD. Morphological study of the effects of intranasal zinc sulfate irrigation on the mouse olfactory epithelium and olfactory bulb. Microsc Res Tech 1993; 24:195-213. [PMID: 8431603 DOI: 10.1002/jemt.1070240302] [Citation(s) in RCA: 77] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
The effects of intranasal zinc sulfate (ZnSO4) irrigation on the morphology of the olfactory epithelium and olfactory bulb were studied in mice with short survival times (as early as 1 day) and with long survival times (up to 593 days) after the irrigation procedure. As in several previous studies, the olfactory epithelium was completely destroyed within a few days after the ZnSO4 treatment. Within 2-4 days, the septum and turbinates were covered by a new, cuboidal epithelium, the cells of which differed significantly from any cells normally seen in the olfactory epithelium. Slowly, over several months, small areas of the olfactory epithelium regenerated in many of the animals. The ultrastructural changes occurring in the olfactory bulb from 1 to 25 days (the reactive stage) were characterized by degenerating olfactory axons and axon terminals, hypertrophy of astroglial cell processes, and proliferation of or extravasation by phagocytic cells. By 25 days after intranasal ZnSO4 irrigation, the number of reactive glial processes and phagocytic cells returned to normal. In some mice with survival times of 150 days or longer, there was reinnervation of small areas of the olfactory bulb by regenerated olfactory axons. These new olfactory axons innervated only superficial glomeruli or the outer portions of deeper glomeruli, but they formed synaptic contacts with mitral/tufted cells and periglomerular cells that did not differ from control animals. These findings were supported by tract-tracing experiments with 3H-amino acids and by behavioral analysis. In summary, the ultrastructural changes observed in the olfactory bulb in this study were not significantly different from those observed after surgical lesions of the olfactory epithelium or nerve.(ABSTRACT TRUNCATED AT 250 WORDS)
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Affiliation(s)
- G D Burd
- Department of Anatomy, University of Arizona, Tucson 85721
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Baker H, Spencer RF. Transneuronal transport of peroxidase-conjugated wheat germ agglutinin (WGA-HRP) from the olfactory epithelium to the brain of the adult rat. Exp Brain Res 1986; 63:461-73. [PMID: 3758265 DOI: 10.1007/bf00237470] [Citation(s) in RCA: 124] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
The sensory neurons of the olfactory epithelium, as a consequence of their odor detection function, contact both the external environment and the central nervous system. The possibility that substances applied to the epithelium might reach the central nervous system was investigated by the intranasal application of peroxidase-conjugated wheat germ agglutinin (WGA-HRP). WGA-HRP was transported through olfactory receptor axons to the glomerulus of the olfactory bulb. Reaction product was localized electron microscopically to tubulovesicular profiles and dense bodies in sensory axons. Evidence of transneuronal transport was indicated by reaction product localized in dense bodies in dendrites postsynaptic to receptor cell axons. Periglomerular, tufted and mitral cells in the olfactory bulb also were transneuronally labeled. Anterograde transneuronal labeling occurred in the olfactory tubercle, piriform cortex and surrounding the lateral olfactory tract. Retrograde transneuronal label was found in neurons of the basal forebrain with the largest number of perikarya in the lateral nucleus of the horizontal limb of the diagonal band, a major source of cholinergic afferents to the olfactory bulb. These data suggest that substances, specifically those which bind to receptors, are transported from the olfactory receptor neurons in the nasal epithelium to the brain. Thus, the olfactory system may provide a route of entry for exogenous substances to the basal forebrain.
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Schalow G, Schmidt H. Effect of nerve length and temperature on the induction of action potentials in denervated slow muscle fibres of the frog. Pflugers Arch 1977; 372:17-22. [PMID: 304209 DOI: 10.1007/bf00582201] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
A. Pyriformis and extensor longus digiti IV muscles of Rana temporaria were denervated by cutting the sciatic or peroneal nerve at various distances from the muscles. Slow fibres were identified by their membrane time constants, and examined for their ability to produce action potentials in response to intracellularly applied current pulses. B. The slow muscle fibres acquired the ability to generate action potentials several days after denervation. The duration of this latent period depended on the length of the peripheral nerve stump, and on the temperature at which the frogs were kept after the operation. C. At 18 degrees C the latent period increased by 0.36 days per mm of sciatic nerve stump. At 11.5 degrees C the corresponding value was 0.7 days/mm. The effect of length of the peroneal nerve was smaller than that of the sciatic nerve. D. It is suggested that the peripheral nerve stump serves as a reservoir of 'trophic' material which is transported towards the slow fibres at a rate of 2.8 mm/day (at 18 degrees C) and seems to block the formation of Na channels. The Q10 value of this transport system would be 2.7.
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Axoplasmic transport of carnosine (?-alanyl-L-histidine) in the mouse olfactory pathway. Neurochem Res 1977; 2:507-19. [DOI: 10.1007/bf00966011] [Citation(s) in RCA: 27] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/19/1977] [Indexed: 10/26/2022]
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Conrad CD, Stumpf WE. Retinal projections traced with thaw-mount autoradiography and multiple injections of tritiated precursor or precursor cocktail. Cell Tissue Res 1974; 155:283-90. [PMID: 4218502 DOI: 10.1007/bf00222807] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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Bondy SC, Madsen CJ. The extent of axoplasmic transport during development, determined by migration of various radioactively-labelled materials. J Neurochem 1974; 23:905-10. [PMID: 4140218 DOI: 10.1111/j.1471-4159.1974.tb10741.x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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Pickel VM, Segal M, Bloom FE. A radioautographic study of the efferent pathways of the nucleus locus coeruleus. J Comp Neurol 1974; 155:15-42. [PMID: 4836061 DOI: 10.1002/cne.901550103] [Citation(s) in RCA: 389] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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Schonbach J, Schonbach C, Cuénod M. Distribution of transported proteins in the slow phase of axoplasmic flow. An electron microscopical autoradiographic study. J Comp Neurol 1973; 152:1-16. [PMID: 4128895 DOI: 10.1002/cne.901520102] [Citation(s) in RCA: 27] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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Gross GW, Beidler LM. Fast axonal transport in the c-fibers of the garfish olfactory nerve. JOURNAL OF NEUROBIOLOGY 1973; 4:413-28. [PMID: 4126912 DOI: 10.1002/neu.480040503] [Citation(s) in RCA: 48] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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Abstract
After injection of tritiated amino acid into the mouse eye, radioactivity appeared in the contralateral visual cortex, indicating that some material had been transferred from optic axons to lateral geniculate neurons. The radioactivity in the cortex was about 2 percent of that arriving in the geniculate, and most of it was contained in material that appeared to be protein.
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Hildebrand C. Ultrastructural and light-microscopic studies of the nodal region in large myelinated fibres of the adult feline spinal cord white matter. ACTA PHYSIOLOGICA SCANDINAVICA. SUPPLEMENTUM 1971; 364:43-79. [PMID: 4109394 DOI: 10.1111/j.1365-201x.1971.tb10978.x] [Citation(s) in RCA: 108] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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Schubert P, Lux HD, Kreutzberg GW. Single cell isotope injection technique, a tool for studying axonal and dendritic transport. Acta Neuropathol 1971; 5:Suppl 5:179-86. [PMID: 4104921 DOI: 10.1007/978-3-642-47449-1_23] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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Friede RL, Samorajski T. Axon caliber related to neurofilaments and microtubules in sciatic nerve fibers of rats and mice. Anat Rec (Hoboken) 1970; 167:379-87. [PMID: 5454590 DOI: 10.1002/ar.1091670402] [Citation(s) in RCA: 372] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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Amaldi P, Rusca G. Autoradiographic study of RNA in nerve fibres of embryonic sensory ganglia cultured in vitro under NGF stimulation. J Neurochem 1970; 17:767-71. [PMID: 5426654 DOI: 10.1111/j.1471-4159.1970.tb03347.x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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Lux HD, Schubert P, Kreutzberg GW, Globus A. Excitation and axonal flow: autoradiographic study on motoneurons intracellularly injected with a 3H-amino acid. Exp Brain Res 1970; 10:197-204. [PMID: 5434498 DOI: 10.1007/bf00234732] [Citation(s) in RCA: 82] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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Foulkes JA, Robinson N. Transport of 14C incorporated protein in the corticospinal tract of the rat brain. J Neurochem 1969; 16:1273-8. [PMID: 4184828 DOI: 10.1111/j.1471-4159.1969.tb05976.x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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Held I, Young IJ. A comparative study of the somato-axonal flow of protein in the feline hypoglossal and vagus nerves. Exp Brain Res 1969; 8:150-62. [PMID: 5808755 DOI: 10.1007/bf00234536] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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Banks P, Mangnall D, Mayor D. The re-distribution of cytochrome oxidase, noradrenaline and adenosine triphosphate in adrenergic nerves constricted at two points. J Physiol 1969; 200:745-62. [PMID: 4303920 PMCID: PMC1350525 DOI: 10.1113/jphysiol.1969.sp008720] [Citation(s) in RCA: 93] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Abstract
1. The experiments correlate certain changes in the ultrastructure of cat hypogastric nerves constricted at two points with the distribution of a mitochondrial enzyme (cytochrome oxidase), noradrenaline (stored in some of the vesicles with an electron dense core, i.e. granular vesicles) and adenosine triphosphate (ATP) (present in noradrenaline storage granules, mitochondria and the soluble fraction of the axon).2. Noradrenaline (NA) and granular vesicles accumulated proximal but not distal to both constrictions. The total amount of NA and the concentration of granular vesicles above the first constriction was greater than that present in a similar piece of normal nerve, indicating that the cell body was continuing to produce the transmitter despite injury to its axon. The granular vesicles proximal to the first constriction were found in swollen or distorted axons and in new axonal outgrowths. It was concluded that the movement of NA in these constricted nerves was only centrifugal in direction.3. Mitochondria and cytochrome oxidase accumulated on both sides of the two constrictions, indicating a bi-directional movement of mitochondria in the damaged axons. The possibility that some of the increase in the cytochrome oxidase could be related to an increase in the number of mitochondria in cells other than neurones is considered.4. The adenosine triphosphate content increased on both sides of the two constrictions. This increase developed more slowly and was less marked than that of the other two substances.5. It was concluded that (a) there was a close correlation between the behaviour of noradrenaline and granular vesicles and between cytochrome oxidase and mitochondria, (b) the dense cored vesicles and the mitochondria moved independently of one another and at different rates after constriction of non-myelinated axons, (c) while some of the changes may be attributed to an obstruction to the free movement of axoplasm others may be due to an active reaction to axonal injury, and (d) localized intraaxonal synthesis of noradrenaline and cytochrome oxidase did not occur between the two constrictions.
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Kasa P. Acetylcholinesterase transport in the central and peripheral nervous tissue: the role of tubules in the enzyme transport. Nature 1968; 218:1265-7. [PMID: 5656660 DOI: 10.1038/2181265a0] [Citation(s) in RCA: 78] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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Giuditta A, Dettbarn WD, Brzin M. Protein synthesis in the isolated giant axon of the squid. Proc Natl Acad Sci U S A 1968; 59:1284-7. [PMID: 5242241 PMCID: PMC224864 DOI: 10.1073/pnas.59.4.1284] [Citation(s) in RCA: 100] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023] Open
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Abstract
After tritiated leucine was injected into the eye of goldfish, radio-active protein synthesized by the ganglion cell bodies moved down the optic axons at an average rate of 0.4 mm per day. Radioautograms of the optic tectum in which these axons end show that, as early as 24 hours after the injection, before the radioactivity in the tectal layer containing the optic axons had risen above background level, the layer containing the axon terminals was already heavily labeled. The radioactivity in the terminals reached a maximum about 48 hours after the injection and remained approximately constant for at least 23 days thereafter, whereas the radioactivity in the fiber layer increased significantly during the same interval, as the slowly moving protein component entered it. Thus there appears to be a special mechanism for rapid transport of protein from the cell body to the synaptic terminals, as well as a slower movement of protein down the axon.
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Weiss P. Neuronal dynamics and axonal flow. 3. Cellulifugal transport of labeled neuroplasm in isolated nerve preparations. Proc Natl Acad Sci U S A 1967; 57:1239-45. [PMID: 5231729 PMCID: PMC224462 DOI: 10.1073/pnas.57.5.1239] [Citation(s) in RCA: 27] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023] Open
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