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Li SJ, Fang DC. DFT Studies on the Dirhodium-Catalyzed [3 + 2] and [3 + 3] Cycloaddition Reactions of Enol Diazoacetates with Isoquinolinium Methylide: Mechanism, Selectivity, and Ligand Effect. Organometallics 2018. [DOI: 10.1021/acs.organomet.8b00069] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Shi-Jun Li
- College of Chemistry, Beijing Normal University, Beijing 100875, People’s Republic of China
| | - De-Cai Fang
- College of Chemistry, Beijing Normal University, Beijing 100875, People’s Republic of China
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2
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Zhang LL, Li SJ, Zhang L, Fang DC. Theoretical studies on CuCl-catalyzed C-H activation/C-O coupling reactions: oxidant and catalyst effects. Org Biomol Chem 2018; 14:4426-35. [PMID: 27088885 DOI: 10.1039/c6ob00581k] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Copper-complex catalyzed coupling reactions have been widely applied in the production of many important organic moieties from a synthetic perspective. In this work, a series of density functional theory (DFT) calculations, employing the B3LYP + IDSCRF/DZVP method, have been performed for a typical CuCl-catalyzed C-O cross-coupling reaction. The novel reaction mechanism was reported as four successive processes: oxidative radical generation (ORG) or oxidative addition (OA), hydrogen abstraction (HA), C-H activation/reductive elimination, and separation of product and recycling of catalyst (SP & RC). Our calculations provided a deep understanding on the dissimilar chemical activities associated with varying the oxidants used; detailed energy profile analyses suggested that the first oxidation process could proceed via either of the two competing channels (ORG and OA mechanisms) which is the basis to explain the different experimental yields. In addition, our molecular modelling gave theoretical evidence that Cu(ii) → Cu(i) reduction by solvent DMF (and a water molecule) might serve as a preliminary step to produce some more active Cu(i) species that could subsequently be oxidized into Cu(iii) favorably. In contrast, the Cu(ii) → Cu(iii) direct pathway was estimated to be prohibited from thermodynamics. All the calculation results in this work are parallel with the experimental observations.
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Affiliation(s)
- Lu-Lu Zhang
- College of Chemistry, Beijing Normal University, Beijing 100875, China.
| | - Shi-Jun Li
- College of Chemistry, Beijing Normal University, Beijing 100875, China.
| | - Lei Zhang
- College of Chemistry, Beijing Normal University, Beijing 100875, China.
| | - De-Cai Fang
- College of Chemistry, Beijing Normal University, Beijing 100875, China.
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Zhao L, Zhang L, Fang DC. DFT Study on Rhodium-Catalyzed Intermolecular [2 + 2] Cycloaddition of Terminal Alkynes with Electron-Deficient Alkenes. Organometallics 2016. [DOI: 10.1021/acs.organomet.6b00646] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Liu Zhao
- College of Chemistry, Beijing Normal University, Beijing 100875, People’s Republic of China
| | - Lei Zhang
- College of Chemistry, Beijing Normal University, Beijing 100875, People’s Republic of China
| | - De-Cai Fang
- College of Chemistry, Beijing Normal University, Beijing 100875, People’s Republic of China
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Han LL, Li SJ, Fang DC. Theoretical estimation of kinetic parameters for nucleophilic substitution reactions in solution: an application of a solution translational entropy model. Phys Chem Chem Phys 2016; 18:6182-90. [PMID: 26847838 DOI: 10.1039/c5cp07803b] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The kinetic parameters, such as activation entropy, activation enthalpy, activation free-energy, and reaction rate constant, for a series of nucleophilic substitution (SN) reactions in solution, are investigated using both a solution-phase translational entropy model and an ideal gas-phase translational entropy model. The results obtained from the solution translational entropy model are in excellent agreement with the experimental values, while the overestimation of activation free-energy from the ideal gas-phase translational entropy model is as large as 6.9 kcal mol(-1). For some of the reactions studied, such as and in methanol, and and in aqueous solution, the explicit + implicit model, namely, a cluster-continuum type model, should be employed to account for the strong solvent-solute interactions. In addition, the explicit + implicit models have also been applied to the DMSO-H2O mixtures, which would open up a door to investigate the reactions in a mixed solvent using density functional theory (DFT) methods.
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Affiliation(s)
- Ling-Li Han
- College of Chemistry, Beijing Normal University, Beijing, 100875, China. and Department of Chemistry and Chemical Engineering, Jining University, Qufu, 273155, Shandong, China
| | - Shi-Jun Li
- College of Chemistry, Beijing Normal University, Beijing, 100875, China.
| | - De-Cai Fang
- College of Chemistry, Beijing Normal University, Beijing, 100875, China.
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Li SJ, Fang DC. A DFT kinetic study on 1,3-dipolar cycloaddition reactions in solution. Phys Chem Chem Phys 2016; 18:30815-30823. [DOI: 10.1039/c6cp05190a] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Several popular density functional theory (DFT) methods have been employed to characterize a series of 1,3-dipolar cycloaddition reactions, including the exploration of reaction mechanisms and the calculations of kinetic parameters.
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Affiliation(s)
- Shi-Jun Li
- College of Chemistry
- Beijing Normal University
- Beijing
- China
| | - De-Cai Fang
- College of Chemistry
- Beijing Normal University
- Beijing
- China
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Zhao L, Li SJ, Fang DC. A Theoretical Study of Ene Reactions in Solution: A Solution-Phase Translational Entropy Model. Chemphyschem 2015; 16:3711-8. [DOI: 10.1002/cphc.201500662] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2015] [Revised: 09/09/2015] [Indexed: 11/07/2022]
Affiliation(s)
- Liu Zhao
- College of Chemistry; Beijing Normal University; Beijing 100875 P.R. China
| | - Shi-Jun Li
- College of Chemistry; Beijing Normal University; Beijing 100875 P.R. China
| | - De-Cai Fang
- College of Chemistry; Beijing Normal University; Beijing 100875 P.R. China
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Mu WH, Xia SY, Li JX, Fang DC, Wei G, Chass GA. Competing Mechanisms, Substituent Effects, and Regioselectivities of Nickel-Catalyzed [2 + 2 + 2] Cycloaddition between Carboryne and Alkynes: A DFT Study. J Org Chem 2015; 80:9108-17. [PMID: 26270257 DOI: 10.1021/acs.joc.5b01464] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Wei-Hua Mu
- Faculty
of Chemistry and Chemical Engineering, Yunnan Normal University, Kunming 650092, Yunnan, China
| | - Shu-Ya Xia
- Faculty
of Chemistry and Chemical Engineering, Yunnan Normal University, Kunming 650092, Yunnan, China
| | - Ji-Xiang Li
- Faculty
of Chemistry and Chemical Engineering, Yunnan Normal University, Kunming 650092, Yunnan, China
| | - De-Cai Fang
- Key
Laboratory of Theoretical and Computational Photochemistry, Ministry
of Education, College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - Gang Wei
- CSIRO Manufacturing Flagship, Bradfield Road, West Lindfield, P.O. Box 218, Lindfield, NSW 2070, Australia
| | - Gregory A Chass
- School
of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, U.K
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Zhao L, Fang DC. A Theoretical Probe of Mechanistic Trichotomy in RhIII-Catalyzed Annulation with Alkyne MIDA Boronates: Roles of Salt, Solvent, and Coupling Partner. European J Org Chem 2015. [DOI: 10.1002/ejoc.201500329] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Xing YM, Zhang L, Fang DC. DFT Studies on the Mechanism of Palladium(IV)-Mediated C–H Activation Reactions: Oxidant Effect and Regioselectivity. Organometallics 2015. [DOI: 10.1021/om501239n] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Yan-Mei Xing
- College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - Lei Zhang
- College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - De-Cai Fang
- College of Chemistry, Beijing Normal University, Beijing 100875, China
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Li Y, Fang DC. DFT calculations on kinetic data for some [4+2] reactions in solution. Phys Chem Chem Phys 2014; 16:15224-30. [DOI: 10.1039/c4cp02068e] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Chen YM, Chass GA, Fang DC. Between a reactant rock and a solvent hard place – molecular corrals guide aromatic substitutions. Phys Chem Chem Phys 2014; 16:1078-83. [DOI: 10.1039/c3cp54079k] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Yao L, Mebel AM, Lu HF, Neusser HJ, Lin SH. Anharmonic Effect on Unimolecular Reactions with Application to the Photodissociation of Ethylene. J Phys Chem A 2007; 111:6722-9. [PMID: 17489565 DOI: 10.1021/jp069012i] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The importance of anharmonic effect on dissociation of molecular systems, especially clusters, has been noted. In this paper, we shall present a theoretical approach that can carry out the first principle calculations of anharmonic canonical and microcanonical rate constants of unimolecular reactions within the framework of transition state theory. In the canonical case, it is essential to calculate the partition function of anharmonic oscillators; for convenience, the Morse oscillator potential will be used for demonstration in this paper. In the microcanical case, which involves the calculation of the total number of states for the activated complex and the density of states for the reactant, we make use of the fact that both the total number of states and the density of states can be expressed in the inverse Laplace transformation of the partition functions and that the inverse Laplace transformation can in turn be carried out by using the saddle-point method. We shall also show that using the theoretical approach presented in this paper the total number of states and density of states can be determined from thermodynamic properties and the difference between the method used in this paper and the thermodynamic model used by Krems and Nordholm will be given. To demonstrate the application of our theoretical approach, we chose the photodissociation of ethylene at 157 and 193 nm as an example.
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Affiliation(s)
- L Yao
- Department of Physics, Dalian Maritime University, Dalian 116023, China.
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Burinsky DJ, Wang F. Mass spectral characterization. SEP SCI TECHNOL 2004. [DOI: 10.1016/s0149-6395(03)80013-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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14
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Fraser SJ. The steady state and equilibrium approximations: A geometrical picture. J Chem Phys 1988. [DOI: 10.1063/1.454686] [Citation(s) in RCA: 122] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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15
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Kay KG, Stone J, Thiele E, Goodman MF. A derivation of the master equation by restricted quantum exchange. Chem Phys Lett 1981. [DOI: 10.1016/0009-2614(81)85436-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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