1
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Zwolschen JW, Vos AP, Ariëns RMC, Schols HA. In vitro batch fermentation of (un)saturated homogalacturonan oligosaccharides. Carbohydr Polym 2024; 329:121789. [PMID: 38286556 DOI: 10.1016/j.carbpol.2024.121789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2023] [Revised: 12/14/2023] [Accepted: 01/04/2024] [Indexed: 01/31/2024]
Abstract
Pectin, predominantly present within plant cell walls, is a dietary fiber that potentially induces distinct health effects depending on its molecular structure. Such structure-dependent health effects of pectin-derived galacturonic acid oligosaccharides (GalA-OS) are yet largely unknown. This study describes the influence of methyl-esterification and ∆4,5-unsaturation of GalA-OS through defined sets of GalA-OS made from pectin using defined pectinases, on the fermentability by individual fecal inocula. The metabolite production, OS utilization, quantity and size, methyl-esterification and saturation of remaining GalA-OS were monitored during the fermentation of GalA-OS. Fermentation of all GalA-OS predominantly induced the production of acetate, butyrate and propionate. Metabolization of unsaturated GalA-OS (uGalA-OS) significantly increased butyrate formation compared to saturated GalA-OS (satGalA-OS), while satGalA-OS significantly increased propionate formation. Absence of methyl-esters within GalA-OS improved substrate metabolization during the first 18 h of fermentation (99 %) compared to their esterified analogues (51 %). Furthermore, HPAEC and HILIC-LC-MS revealed accumulation of specific methyl-esterified GalA-OS, confirming that methyl-esterification delays fermentation. Fermentation of structurally distinct GalA-OS results in donor specific microbiota composition with uGalA-OS specifically stimulating the butyrate-producer Clostridium Butyricum. This study concludes that GalA-OS fermentation induces highly structure-dependent changes in the gut microbiota, further expanding their potential use as prebiotics.
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Affiliation(s)
- J W Zwolschen
- Wageningen University & Research, Laboratory of Food Chemistry, Bornse Weilanden 9, 6708 WG Wageningen, the Netherlands
| | - A P Vos
- Wageningen Food & Biobased Research, Wageningen, the Netherlands
| | - R M C Ariëns
- Wageningen Food & Biobased Research, Wageningen, the Netherlands
| | - H A Schols
- Wageningen University & Research, Laboratory of Food Chemistry, Bornse Weilanden 9, 6708 WG Wageningen, the Netherlands.
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2
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Functional Classification and Characterization of the Fungal Glycoside Hydrolase 28 Protein Family. J Fungi (Basel) 2022; 8:jof8030217. [PMID: 35330219 PMCID: PMC8952511 DOI: 10.3390/jof8030217] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2022] [Revised: 02/13/2022] [Accepted: 02/15/2022] [Indexed: 02/01/2023] Open
Abstract
Pectin is a major constituent of the plant cell wall, comprising compounds with important industrial applications such as homogalacturonan, rhamnogalacturonan and xylogalacturonan. A large array of enzymes is involved in the degradation of this amorphous substrate. The Glycoside Hydrolase 28 (GH28) family includes polygalacturonases (PG), rhamnogalacturonases (RG) and xylogalacturonases (XG) that share a structure of three to four pleated β-sheets that form a rod with the catalytic site amidst a long, narrow groove. Although these enzymes have been studied for many years, there has been no systematic analysis. We have collected a comprehensive set of GH28 encoding sequences to study their evolution in fungi, directed at obtaining a functional classification, as well as at the identification of substrate specificity as functional constraint. Computational tools such as Alphafold, Consurf and MEME were used to identify the subfamilies’ characteristics. A hierarchic classification defines the major classes of endoPG, endoRG and endoXG as well as three exoPG classes. Ascomycete endoPGs are further classified in two subclasses whereas we identify four exoRG subclasses. Diversification towards exomode is explained by loops that appear inserted in a number of turns. Substrate-driven diversification can be identified by various specificity determining positions that appear to surround the binding groove.
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3
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Kinnaert C, Daugaard M, Nami F, Clausen MH. Chemical Synthesis of Oligosaccharides Related to the Cell Walls of Plants and Algae. Chem Rev 2017; 117:11337-11405. [DOI: 10.1021/acs.chemrev.7b00162] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Christine Kinnaert
- Center for Nanomedicine and
Theranostics, Department of Chemistry, Technical University of Denmark, Kemitorvet, Building 207, 2800 Kongens Lyngby, Denmark
| | - Mathilde Daugaard
- Center for Nanomedicine and
Theranostics, Department of Chemistry, Technical University of Denmark, Kemitorvet, Building 207, 2800 Kongens Lyngby, Denmark
| | - Faranak Nami
- Center for Nanomedicine and
Theranostics, Department of Chemistry, Technical University of Denmark, Kemitorvet, Building 207, 2800 Kongens Lyngby, Denmark
| | - Mads H. Clausen
- Center for Nanomedicine and
Theranostics, Department of Chemistry, Technical University of Denmark, Kemitorvet, Building 207, 2800 Kongens Lyngby, Denmark
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Reverchon S, Muskhelisvili G, Nasser W. Virulence Program of a Bacterial Plant Pathogen: The Dickeya Model. PROGRESS IN MOLECULAR BIOLOGY AND TRANSLATIONAL SCIENCE 2016; 142:51-92. [PMID: 27571692 DOI: 10.1016/bs.pmbts.2016.05.005] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
The pectinolytic Dickeya spp. are Gram-negative bacteria causing severe disease in a wide range of plant species. Although the Dickeya genus was initially restricted to tropical and subtropical areas, two Dickeya species (D. dianthicola and D. solani) emerged recently in potato cultures in Europe. Soft-rot, the visible symptoms, is caused by plant cell wall degrading enzymes, mainly pectate lyases (Pels) that cleave the pectin polymer. However, an efficient colonization of the host requires many additional elements including early factors (eg, flagella, lipopolysaccharide, and exopolysaccharide) that allow adhesion of the bacteria and intermediate factors involved in adaptation to new growth conditions encountered in the host (eg, oxidative stress, iron starvation, and toxic compounds). To facilitate this adaptation, Dickeya have developed complex regulatory networks ensuring appropriate expression of virulence genes. This review presents recent advances in our understanding of the signals and genetic circuits impacting the expression of virulence determinants. Special attention is paid to integrated control of virulence functions by variations in the superhelical density of chromosomal DNA, and the global and specific regulators, making the regulation of Dickeya virulence an especially attractive model for those interested in relationships between the chromosomal dynamics and gene regulatory networks.
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Affiliation(s)
- S Reverchon
- Department of Biology, University of Lyon, INSA-Lyon, Villeurbanne, Lyon, France.
| | - G Muskhelisvili
- Department of Biology, University of Lyon, INSA-Lyon, Villeurbanne, Lyon, France
| | - W Nasser
- Department of Biology, University of Lyon, INSA-Lyon, Villeurbanne, Lyon, France
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5
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Jiang X, Zghidi-Abouzid O, Oger-Desfeux C, Hommais F, Greliche N, Muskhelishvili G, Nasser W, Reverchon S. Global transcriptional response of Dickeya dadantii to environmental stimuli relevant to the plant infection. Environ Microbiol 2016; 18:3651-3672. [PMID: 26940633 DOI: 10.1111/1462-2920.13267] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2015] [Accepted: 02/14/2016] [Indexed: 11/28/2022]
Abstract
Dickeya species are soft rot disease-causing bacterial plant pathogens and an emerging agricultural threat in Europe. Environmental modulation of gene expression is critical for Dickeya dadantii pathogenesis. While the bacterium uses various environmental cues to distinguish between its habitats, an intricate transcriptional control system coordinating the expression of virulence genes ensures efficient infection. Understanding of this behaviour requires a detailed knowledge of expression patterns under a wide range of environmental conditions, which is currently lacking. To obtain a comprehensive picture of this adaptive response, we devised a strategy to examine the D. dadantii transcriptome in a series of 32 infection-relevant conditions encountered in the hosts. We propose a temporal map of the bacterial response to various stress conditions and show that D. dadantii elicits complex genetic behaviour combining common stress-response genes with distinct sets of genes specifically induced under each particular stress. Comparison of our dataset with an in planta expression profile reveals the combined impact of stress factors and enables us to predict the major stress confronting D. dadantii at a particular stage of infection. We provide a comprehensive catalog of D. dadantii genomic responses to environmentally relevant stimuli, thus facilitating future studies of this important plant pathogen.
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Affiliation(s)
- Xuejiao Jiang
- Univ Lyon, Université Lyon 1, INSA-Lyon, CNRS, UMR5240, Microbiologie, Adaptation, Pathogénie, Département Biologie, F-69622, Villeurbanne, France
| | - Ouafa Zghidi-Abouzid
- Univ Lyon, Université Lyon 1, INSA-Lyon, CNRS, UMR5240, Microbiologie, Adaptation, Pathogénie, Département Biologie, F-69622, Villeurbanne, France
| | - Christine Oger-Desfeux
- Univ Lyon, Université Lyon 1, Pôle Rhône-Alpes de Bioinformatique, Département Biologie, F-69622, Villeurbanne, France
| | - Florence Hommais
- Univ Lyon, Université Lyon 1, INSA-Lyon, CNRS, UMR5240, Microbiologie, Adaptation, Pathogénie, Département Biologie, F-69622, Villeurbanne, France
| | - Nicolas Greliche
- Univ Lyon, Université Lyon 1, INSA-Lyon, CNRS, UMR5240, Microbiologie, Adaptation, Pathogénie, Département Biologie, F-69622, Villeurbanne, France
| | - Georgi Muskhelishvili
- Univ Lyon, Université Lyon 1, INSA-Lyon, CNRS, UMR5240, Microbiologie, Adaptation, Pathogénie, Département Biologie, F-69622, Villeurbanne, France
| | - William Nasser
- Univ Lyon, Université Lyon 1, INSA-Lyon, CNRS, UMR5240, Microbiologie, Adaptation, Pathogénie, Département Biologie, F-69622, Villeurbanne, France
| | - Sylvie Reverchon
- Univ Lyon, Université Lyon 1, INSA-Lyon, CNRS, UMR5240, Microbiologie, Adaptation, Pathogénie, Département Biologie, F-69622, Villeurbanne, France
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6
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Kent LM, Loo TS, Melton LD, Mercadante D, Williams MAK, Jameson GB. Structure and Properties of a Non-processive, Salt-requiring, and Acidophilic Pectin Methylesterase from Aspergillus niger Provide Insights into the Key Determinants of Processivity Control. J Biol Chem 2015; 291:1289-306. [PMID: 26567911 DOI: 10.1074/jbc.m115.673152] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2015] [Indexed: 12/17/2022] Open
Abstract
Many pectin methylesterases (PMEs) are expressed in plants to modify plant cell-wall pectins for various physiological roles. These pectins are also attacked by PMEs from phytopathogens and phytophagous insects. The de-methylesterification by PMEs of the O6-methyl ester groups of the homogalacturonan component of pectin, exposing galacturonic acids, can occur processively or non-processively, respectively, describing sequential versus single de-methylesterification events occurring before enzyme-substrate dissociation. The high resolution x-ray structures of a PME from Aspergillus niger in deglycosylated and Asn-linked N-acetylglucosamine-stub forms reveal a 10⅔-turn parallel β-helix (similar to but with less extensive loops than bacterial, plant, and insect PMEs). Capillary electrophoresis shows that this PME is non-processive, halophilic, and acidophilic. Molecular dynamics simulations and electrostatic potential calculations reveal very different behavior and properties compared with processive PMEs. Specifically, uncorrelated rotations are observed about the glycosidic bonds of a partially de-methyl-esterified decasaccharide model substrate, in sharp contrast to the correlated rotations of processive PMEs, and the substrate-binding groove is negatively not positively charged.
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Affiliation(s)
- Lisa M Kent
- From Riddet Institute and Institute of Fundamental Sciences, Massey University, Palmerston North 4442, New Zealand
| | - Trevor S Loo
- From Riddet Institute and Institute of Fundamental Sciences, Massey University, Palmerston North 4442, New Zealand
| | - Laurence D Melton
- From Riddet Institute and School of Chemical Sciences, University of Auckland, Auckland 1142, New Zealand
| | - Davide Mercadante
- From Riddet Institute and Molecular Biomechanics Group, Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, 69118 Heidelberg, Germany, and
| | - Martin A K Williams
- From Riddet Institute and Institute of Fundamental Sciences, Massey University, Palmerston North 4442, New Zealand, MacDiarmid Institute for Advanced Materials and Nanotechnology, Palmerston North 4442, New Zealand
| | - Geoffrey B Jameson
- From Riddet Institute and Institute of Fundamental Sciences, Massey University, Palmerston North 4442, New Zealand, MacDiarmid Institute for Advanced Materials and Nanotechnology, Palmerston North 4442, New Zealand
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7
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Babbar N, Dejonghe W, Gatti M, Sforza S, Elst K. Pectic oligosaccharides from agricultural by-products: production, characterization and health benefits. Crit Rev Biotechnol 2015; 36:594-606. [DOI: 10.3109/07388551.2014.996732] [Citation(s) in RCA: 88] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Neha Babbar
- Separation & Conversion Technology, VITO-Flemish Institute for Technological Research, Boeretang, Mol, Belgium and
- Department of Food Science, University of Parma, Parco Area delle Scienze, Parma, Italy
| | - Winnie Dejonghe
- Separation & Conversion Technology, VITO-Flemish Institute for Technological Research, Boeretang, Mol, Belgium and
| | - Monica Gatti
- Department of Food Science, University of Parma, Parco Area delle Scienze, Parma, Italy
| | - Stefano Sforza
- Department of Food Science, University of Parma, Parco Area delle Scienze, Parma, Italy
| | - Kathy Elst
- Separation & Conversion Technology, VITO-Flemish Institute for Technological Research, Boeretang, Mol, Belgium and
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8
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Hugouvieux-Cotte-Pattat N, Condemine G, Shevchik VE. Bacterial pectate lyases, structural and functional diversity. ENVIRONMENTAL MICROBIOLOGY REPORTS 2014; 6:427-40. [PMID: 25646533 DOI: 10.1111/1758-2229.12166] [Citation(s) in RCA: 114] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Pectate lyases are enzymes involved in plant cell wall degradation. They cleave pectin using a β-elimination mechanism, specific for acidic polysaccharides. They are mainly produced by plant pathogens and plant-associated organisms, and only rarely by animals. Pectate lyases are also commonly produced in the bacterial world, either by bacteria living in close proximity with plants or by gut bacteria that find plant material in the digestive tract of their hosts. The role of pectate lyases is essential for plant pathogens, such as Dickeya dadantii, that use a set of pectate lyases as their main virulence factor. Symbiotic bacteria produce their own pectate lyases, but they also induce plant pectate lyases to initiate the symbiosis. Pectin degradation products may act as signals affecting the plant–bacteria interactions. Bacterial pectate lyases are also essential for using the pectin of dead or living plants as a carbon source for growth. In the animal gut, Bacteroides pectate lyases degrade the pectin of ingested food, and this is particularly important for herbivores that depend on their microflora for the digestion of pectin. Some human pathogens, such as Yersinia enterocolitica, produce a few intracellular pectate lyases that can facilitate their growth in the presence of highly pectinolytic bacteria, at the plant surface, in the soil or in the animal gut.
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9
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Barbakadze V, Gogilashvili L, Amiranashvili L, Merlani M, Mulkijanyan K, Churadze M, Salgado A, Chankvetadze B. Poly[3-(3,4-dihydroxyphenyl)glyceric Acid] from Anchusa italica Roots. Nat Prod Commun 2010. [DOI: 10.1177/1934578x1000500722] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Elucidation of the main structural unit of a water-soluble, high-molecular weight preparation from the crude polysaccharides of Anchusa italica Retz. roots has been carried out. According to 13C NMR, 1H NMR and 2D heteronuclear 1H/13C HSQC spectral data, the main structural element of the high-molecular, water-soluble preparation was a regularly substituted polyoxyethylene chain, namely poly[oxy-1-carboxy-2-(3,4-dihydroxyphenyl)ethylene]. Most carboxylic groups of this caffeic acid-derived polymer of A. italica are methylated.
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Affiliation(s)
- Vakhtang Barbakadze
- I. Kutateladze Institute of Pharmacochemistry, 36 P. Sarajishvili str., 0159 Tbilisi, Georgia
| | - Lali Gogilashvili
- I. Kutateladze Institute of Pharmacochemistry, 36 P. Sarajishvili str., 0159 Tbilisi, Georgia
| | - Lela Amiranashvili
- I. Kutateladze Institute of Pharmacochemistry, 36 P. Sarajishvili str., 0159 Tbilisi, Georgia
| | - Maia Merlani
- I. Kutateladze Institute of Pharmacochemistry, 36 P. Sarajishvili str., 0159 Tbilisi, Georgia
| | - Karen Mulkijanyan
- I. Kutateladze Institute of Pharmacochemistry, 36 P. Sarajishvili str., 0159 Tbilisi, Georgia
| | - Manana Churadze
- I. Kutateladze Institute of Pharmacochemistry, 36 P. Sarajishvili str., 0159 Tbilisi, Georgia
| | - Antonio Salgado
- Departamento de Química Médica, Centro Nacional de Investigaciones Oncológicas (CNIO), Melchor Fernández Almagro 3, 28029 Madrid, Spain
| | - Bezhan Chankvetadze
- Department of Physical and Analytical Chemistry and Molecular Recognition and Separation Science Laboratory, School of Exact and Natural Sciences, Tbilisi State University, 3 Chavchavadze Ave., 0179 Tbilisi, Georgia
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10
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11
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Massa C, Clausen MH, Stojan J, Lamba D, Campa C. Study of the mode of action of a polygalacturonase from the phytopathogen Burkholderia cepacia. Biochem J 2008; 407:207-17. [PMID: 17627609 PMCID: PMC2049012 DOI: 10.1042/bj20061833] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
We have recently isolated and heterologously expressed BcPeh28A, an endopolygalacturonase from the phytopathogenic Gram-negative bacterium Burkholderia cepacia. Endopolygalacturonases belong to glycoside hydrolase family 28 and are responsible for the hydrolysis of the non-esterified regions of pectins. The mode of action of BcPeh28A on different substrates has been investigated and its enzymatic mechanism elucidated. The hydrolysis of polygalacturonate indicates that BcPeh28A is a non-processive enzyme that releases oligomers with chain lengths ranging from two to eight. By inspection of product progression curves, a kinetic model has been generated and extensively tested. It has been used to derive the kinetic parameters that describe the time course of the formation of six predominant products. Moreover, an investigation of the enzymatic activity on shorter substrates that differ in their overall length and methylation patterns sheds light on the architecture of the BcPeh28A active site. Specifically the tolerance of individual sites towards methylated saccharide units was rationalized on the basis of the hydrolysis of hexagalacturonides with different methylation patterns.
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Affiliation(s)
- Claudia Massa
- International School for Advanced Studies, Via Beirut 2/4, I-34014 Trieste, Italy.
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12
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Rosenbohm C, Lundt I, Christensen TIE, Young NG. Chemically methylated and reduced pectins: preparation, characterisation by 1H NMR spectroscopy, enzymatic degradation, and gelling properties. Carbohydr Res 2003; 338:637-49. [PMID: 12644377 DOI: 10.1016/s0008-6215(02)00440-8] [Citation(s) in RCA: 97] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The gelling properties of pectins are known to be closely related to the degree of methylation (DM) and the distribution of the ester groups. In order to investigate this dependency, a natural citrus pectin (DM 64%) has been methylated to pectins with higher DM or saponified to achieve pectins with lower DM. A simple method for determination of DM by 1H NMR spectroscopy is presented. New modified pectins have been prepared by treatment of pectins having different DM with NaBH(4) to reduce selectively the methyl esters to primary alcohols in the presence of free acids. The degree of reduction (DR) and the DM of the remaining carboxylic acids could likewise be determined by 1H NMR spectroscopy. The new reduced pectins are recognized by the pectin degrading enzymes polygalacturonase PGI and PGII as well as by pectin lyase, all from Aspergillus niger, but the enzymes exhibit lower specific activities as compared with unmodified pectin. The new reduced pectins exhibit high gelling properties.
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Affiliation(s)
- Christoph Rosenbohm
- Department of Chemistry, Technical University of Denmark, Building 201, DK-2800 Kgs., Lyngby, Denmark
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13
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14
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Williams MAK, Benen JAE. A novel enzyme activity involving the demethylation of specific partially methylated oligogalacturonides. Biochem J 2002; 367:511-5. [PMID: 12097140 PMCID: PMC1222889 DOI: 10.1042/bj20020796] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2002] [Accepted: 07/03/2002] [Indexed: 11/17/2022]
Abstract
Studies of the enzymic digestion of pectic substrates using different polygalacturonase (PG) preparations have revealed evidence for a previously unreported enzyme activity carried out by a contaminating enzyme in one of the preparations. This observed activity involves the demethylation of specific oligogalacturonides, namely 2-methyltrigalacturonic acid and 2,3-dimethyltetragalacturonic acid. However, no large-scale demethylation of highly methylated polymeric substrates is found, demonstrating that the enzyme responsible is not a conventional pectin methylesterase (PME). Furthermore, it has been shown that a commercial sample of fungal PME from Aspergillus niger demethylates all of the oligogalacturonides present as primary products of endo-PG digestion, in contrast with the activity observed here. On the basis of the known methyl ester distribution of the endo-PG-generated fragments and knowledge of which of these oligogalacturonides are demethylated, it is concluded that the observed activity can be explained by the existence of an exo-acting methylesterase that attacks the non-reducing end of the oligogalacturonide molecules.
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15
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Evans JD, Akin DE, Foulk JA. Flax-retting by polygalacturonase-containing enzyme mixtures and effects on fiber properties. J Biotechnol 2002; 97:223-31. [PMID: 12084478 DOI: 10.1016/s0168-1656(02)00066-4] [Citation(s) in RCA: 72] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
Enzyme-retting of flax was accomplished via individual treatment with four polygalacturonase (PGase) containing solutions of various fungal sources and the resulting fibers were characterized. The retting solutions were equilibrated to contain 2.19 U of PGase activity as determined via a dinitrosalicylic acid (DNS) reducing sugar assay. As compared with the buffer control, treatment with the various enzyme solutions increased the yield of fine fibers. Treatment with Aspergillus niger PGase resulted in a 62% increase in fine fiber yield as compared with the buffer control and fiber strength did not statistically differ (P</=0.05) between these treatments. Retting via PGases of Rhizopus origin produced the weakest fibers. These results illustrate that the crude PGases differ in their ability to ret flax and that under the defined experimental conditions the A. niger PGase is a better retting agent. Light microscopy demonstrated the ability of all enzymes to separate fiber from shive and epidermal tissues. Enzyme profiles of the solutions were determined via viscometric assays. Pectinolytic activity was the predominant activity of all enzymes tested. Activity against carboxymethyl cellulose (CMC) was a minor component of all solutions except A. niger PGase for which no activity was detected.
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Affiliation(s)
- Jeff D Evans
- Agricultural Research Service, Richard B. Russell Research Center, US Department of Agriculture, P.O. Box 5677, Athens, GA 30604, USA
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16
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de Vries RP, Visser J. Aspergillus enzymes involved in degradation of plant cell wall polysaccharides. Microbiol Mol Biol Rev 2001; 65:497-522, table of contents. [PMID: 11729262 PMCID: PMC99039 DOI: 10.1128/mmbr.65.4.497-522.2001] [Citation(s) in RCA: 542] [Impact Index Per Article: 23.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Degradation of plant cell wall polysaccharides is of major importance in the food and feed, beverage, textile, and paper and pulp industries, as well as in several other industrial production processes. Enzymatic degradation of these polymers has received attention for many years and is becoming a more and more attractive alternative to chemical and mechanical processes. Over the past 15 years, much progress has been made in elucidating the structural characteristics of these polysaccharides and in characterizing the enzymes involved in their degradation and the genes of biotechnologically relevant microorganisms encoding these enzymes. The members of the fungal genus Aspergillus are commonly used for the production of polysaccharide-degrading enzymes. This genus produces a wide spectrum of cell wall-degrading enzymes, allowing not only complete degradation of the polysaccharides but also tailored modifications by using specific enzymes purified from these fungi. This review summarizes our current knowledge of the cell wall polysaccharide-degrading enzymes from aspergilli and the genes by which they are encoded.
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Affiliation(s)
- R P de Vries
- Molecular Genetics of Industrial Microorganisms, Wageningen University, 6703 HA Wageningen, The Netherlands.
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17
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van Alebeek GJ, Schols H, Voragen A. Amidation of methyl-esterified oligogalacturonides: examination of the reaction products using MALDI-TOF MS. Carbohydr Polym 2001. [DOI: 10.1016/s0144-8617(00)00330-1] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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18
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Williams MA, Buffet GM, Foster TJ, Norton IT. Simulation of endo-PG digest patterns and implications for the determination of pectin fine structure. Carbohydr Res 2001; 334:243-50. [PMID: 11513831 DOI: 10.1016/s0008-6215(01)00165-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Abstract
Novel stepwise approaches to the calculation of enzyme digest patterns are described and used in the validation of a computer simulation. Results obtained using the simulation show that, while a previously proposed model of endo-PG action captures some of the salient features of this enzymes behaviour, it is not sufficient to successfully predict experimental digest patterns from pectic substrates. Subsequently, it has been shown that a modified model incorporating existing information regarding subsite architecture and speculative site tolerances for esterified residues, goes someway towards improving the situation.
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Affiliation(s)
- M A Williams
- Unilever Research Colworth, Sharnbrook, MK44 1LQ Bedford, UK
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Parenicová L, Kester HC, Benen JA, Visser J. Characterization of a novel endopolygalacturonase from Aspergillus niger with unique kinetic properties. FEBS Lett 2000; 467:333-6. [PMID: 10675564 DOI: 10.1016/s0014-5793(00)01173-x] [Citation(s) in RCA: 46] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
We isolated and characterized a new type of endopolygalacturonase (PG)-encoding gene, pgaD, from Aspergillus niger. The primary structure of PGD differs from that of other A. niger PGs by a 136 amino acid residues long N-terminal extension. Biochemical analysis demonstrated extreme processive behavior of the enzyme on oligomers longer than five galacturonate units. Furthermore, PGD is the only A. niger PG capable of hydrolyzing di-galacturonate. It is tentatively concluded that the enzyme is composed of four subsites. The physiological role of PGD is discussed.
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Affiliation(s)
- L Parenicová
- Section Molecular Genetics of Industrial Microorganisms, Wageningen Agricultural University, Dreyenlaan 2, 6703 HA, Wageningen, The Netherlands
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