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For: Drevland RM, Jia Y, Palmer DRJ, Graham DE. Methanogen homoaconitase catalyzes both hydrolyase reactions in coenzyme B biosynthesis. J Biol Chem 2008;283:28888-96. [PMID: 18765671 PMCID: PMC2662002 DOI: 10.1074/jbc.m802159200] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2008] [Revised: 08/27/2008] [Indexed: 11/06/2022]  Open
Number Cited by Other Article(s)
1
Padalko A, Nair G, Sousa FL. Fusion/fission protein family identification in Archaea. mSystems 2024;9:e0094823. [PMID: 38700364 PMCID: PMC11237513 DOI: 10.1128/msystems.00948-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Accepted: 04/02/2024] [Indexed: 05/05/2024]  Open
2
Thirumalai A, Ganapathy Raman P, Jayavelu T, Subramanian R. Bridging the gap between maleate hydratase, citraconase and isopropylmalate isomerase: Insights into the single broad-specific enzyme. Enzyme Microb Technol 2023;162:110140. [DOI: 10.1016/j.enzmictec.2022.110140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Revised: 09/23/2022] [Accepted: 10/08/2022] [Indexed: 11/13/2022]
3
Kirschning A. On the Evolutionary History of the Twenty Encoded Amino Acids. Chemistry 2022;28:e202201419. [PMID: 35726786 PMCID: PMC9796705 DOI: 10.1002/chem.202201419] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2022] [Indexed: 01/07/2023]
4
Research Progress on the Construction of Artificial Pathways for the Biosynthesis of Adipic Acid by Engineered Microbes. FERMENTATION 2022. [DOI: 10.3390/fermentation8080393] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]  Open
5
Martínez-Álvaro M, Auffret MD, Duthie CA, Dewhurst RJ, Cleveland MA, Watson M, Roehe R. Bovine host genome acts on rumen microbiome function linked to methane emissions. Commun Biol 2022;5:350. [PMID: 35414107 PMCID: PMC9005536 DOI: 10.1038/s42003-022-03293-0] [Citation(s) in RCA: 27] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Accepted: 03/17/2022] [Indexed: 12/28/2022]  Open
6
Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily. Commun Biol 2021;4:687. [PMID: 34099860 PMCID: PMC8184944 DOI: 10.1038/s42003-021-02147-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2020] [Accepted: 04/23/2021] [Indexed: 11/17/2022]  Open
7
Methanothermobacter thermautotrophicus strain ΔH as a potential microorganism for bioconversion of CO2 to methane. J CO2 UTIL 2020. [DOI: 10.1016/j.jcou.2020.101210] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
8
Lin GM, Warden-Rothman R, Voigt CA. Retrosynthetic design of metabolic pathways to chemicals not found in nature. ACTA ACUST UNITED AC 2019. [DOI: 10.1016/j.coisb.2019.04.004] [Citation(s) in RCA: 57] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
9
Muñoz-Velasco I, García-Ferris C, Hernandez-Morales R, Lazcano A, Peretó J, Becerra A. Methanogenesis on Early Stages of Life: Ancient but Not Primordial. ORIGINS LIFE EVOL B 2018;48:407-420. [PMID: 30612264 DOI: 10.1007/s11084-018-9570-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2018] [Accepted: 12/19/2018] [Indexed: 10/27/2022]
10
Functional characterization of aconitase X as a cis-3-hydroxy-L-proline dehydratase. Sci Rep 2016;6:38720. [PMID: 27929065 PMCID: PMC5144071 DOI: 10.1038/srep38720] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2016] [Accepted: 11/11/2016] [Indexed: 01/30/2023]  Open
11
Turk SCHJ, Kloosterman WP, Ninaber DK, Kolen KPAM, Knutova J, Suir E, Schürmann M, Raemakers-Franken PC, Müller M, de Wildeman SMA, Raamsdonk LM, van der Pol R, Wu L, Temudo MF, van der Hoeven RAM, Akeroyd M, van der Stoel RE, Noorman HJ, Bovenberg RAL, Trefzer AC. Metabolic Engineering toward Sustainable Production of Nylon-6. ACS Synth Biol 2016;5:65-73. [PMID: 26511532 DOI: 10.1021/acssynbio.5b00129] [Citation(s) in RCA: 72] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
12
Zhou H, Vonk B, Roubos JA, Bovenberg RAL, Voigt CA. Algorithmic co-optimization of genetic constructs and growth conditions: application to 6-ACA, a potential nylon-6 precursor. Nucleic Acids Res 2015;43:10560-70. [PMID: 26519464 PMCID: PMC4666358 DOI: 10.1093/nar/gkv1071] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2015] [Accepted: 10/01/2015] [Indexed: 11/14/2022]  Open
13
Hiseni A, Arends IWCE, Otten LG. New Cofactor-Independent Hydration Biocatalysts: Structural, Biochemical, and Biocatalytic Characteristics of Carotenoid and Oleate Hydratases. ChemCatChem 2014. [DOI: 10.1002/cctc.201402511] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
14
Lee EH, Lee K, Hwang KY. Structural characterization and comparison of the large subunits of IPM isomerase and homoaconitase from Methanococcus jannaschii. ACTA ACUST UNITED AC 2014;70:922-31. [PMID: 24699638 DOI: 10.1107/s1399004713033762] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2013] [Accepted: 12/13/2013] [Indexed: 11/10/2022]
15
Kanehisa M. Automated interpretation of metabolic capacity from genome and metagenome sequences. QUANTITATIVE BIOLOGY 2013. [DOI: 10.1007/s40484-013-0019-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
16
Milewska MJ, Prokop M, Gabriel I, Wojciechowski M, Milewski S. Antifungal activity of homoaconitate and homoisocitrate analogs. Molecules 2012. [PMID: 23187286 PMCID: PMC6268379 DOI: 10.3390/molecules171214022] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
17
Fazius F, Shelest E, Gebhardt P, Brock M. The fungal α-aminoadipate pathway for lysine biosynthesis requires two enzymes of the aconitase family for the isomerization of homocitrate to homoisocitrate. Mol Microbiol 2012;86:1508-30. [PMID: 23106124 PMCID: PMC3556520 DOI: 10.1111/mmi.12076] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/15/2012] [Indexed: 11/30/2022]
18
Engineering synthetic recursive pathways to generate non-natural small molecules. Nat Chem Biol 2012;8:518-26. [PMID: 22596203 DOI: 10.1038/nchembio.959] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
19
Lee EH, Cho YW, Hwang KY. Crystal structure of LeuD from Methanococcus jannaschii. Biochem Biophys Res Commun 2012;419:160-4. [DOI: 10.1016/j.bbrc.2012.01.125] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2012] [Accepted: 01/26/2012] [Indexed: 11/25/2022]
20
Dairi T, Kuzuyama T, Nishiyama M, Fujii I. Convergent strategies in biosynthesis. Nat Prod Rep 2011;28:1054-86. [PMID: 21547300 DOI: 10.1039/c0np00047g] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
21
More than 200 genes required for methane formation from H₂ and CO₂ and energy conservation are present in Methanothermobacter marburgensis and Methanothermobacter thermautotrophicus. ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL 2011;2011:973848. [PMID: 21559116 PMCID: PMC3087415 DOI: 10.1155/2011/973848] [Citation(s) in RCA: 82] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/24/2010] [Revised: 12/07/2010] [Accepted: 02/18/2011] [Indexed: 12/19/2022]
22
2-Oxoacid Metabolism in Methanogenic CoM and CoB Biosynthesis. Methods Enzymol 2011. [DOI: 10.1016/b978-0-12-385112-3.00015-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
23
Manikandan K, Geerlof A, Zozulya AV, Svergun DI, Weiss MS. Structural studies on the enzyme complex isopropylmalate isomerase (LeuCD) fromMycobacterium tuberculosis. Proteins 2010;79:35-49. [DOI: 10.1002/prot.22856] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2010] [Revised: 07/08/2010] [Accepted: 07/25/2010] [Indexed: 11/10/2022]
24
Wohlgemuth R. Asymmetric biocatalysis with microbial enzymes and cells. Curr Opin Microbiol 2010;13:283-92. [DOI: 10.1016/j.mib.2010.04.001] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2010] [Revised: 04/01/2010] [Accepted: 04/02/2010] [Indexed: 01/05/2023]
25
Jeyakanthan J, Drevland RM, Gayathri DR, Velmurugan D, Shinkai A, Kuramitsu S, Yokoyama S, Graham DE. Substrate Specificity Determinants of the Methanogen Homoaconitase Enzyme: Structure and Function of the Small Subunit,. Biochemistry 2010;49:2687-96. [DOI: 10.1021/bi901766z] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
26
Archaeal ApbC/Nbp35 homologs function as iron-sulfur cluster carrier proteins. J Bacteriol 2008;191:1490-7. [PMID: 19114487 DOI: 10.1128/jb.01469-08] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
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