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Patkar D, Bharati Ahirwar M, Deshmukh MM. A Tug of War between the Self- and Cross-associating Hydrogen Bonds in Neutral Ammonia-Water Clusters: Energetic Insights by Molecular Tailoring Approach. Chemphyschem 2022; 23:e202200476. [PMID: 36127809 DOI: 10.1002/cphc.202200476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2022] [Revised: 09/09/2022] [Indexed: 01/05/2023]
Abstract
In the present work, the energies of various types of individual HBs observed in neutral (NH3 )m (H2 O)n , (m+n=2 to 7) clusters were estimated using the molecular tailoring approach (MTA)-based method. The calculated individual HB energies suggest that the O-H…N HBs are the strongest (1.21 to 12.49 kcal mol-1 ). The next ones are the O-H…O (3.97 to 9.30 kcal mol-1 ) HBs. The strengths of N-H…N (1.09 to 5.29 kcal mol-1 ) and N-H…O (2.85 to 5.56 kcal mol-1 ) HBs are the weakest. The HB energies in dimers also follow this rank ordering. However, the HB energies in dimers are much smaller than those obtained by the MTA-based method due to the loss in cooperativity contribution in the dimers. Thus, the calculated cooperativity contributions, for different types of HBs, fall in the range 0.64 to 5.73 kcal mol-1 . We wish to emphasize based on the energetic rank ordering obtained by the MTA-based method that the O-H of water is a better HB donor than the N-H of ammonia. The reasons for the observed energetic rank ordering are two folds: (i) intrinsically stronger O-H…N HBs than the O-H…O ones as revealed by dimer energies and (ii) the higher cooperativity contribution in the former than the later ones. Indeed, the MTA-based method is useful in providing the missing energetic rank ordering of various type of HBs in neutral (NH3 )m (H2 O)n clusters, in the literature.
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Affiliation(s)
- Deepak Patkar
- Department of Chemistry, Dr. Harisingh Gour Vishwavidyalaya, (A Central University), 470003, Sagar, India
| | - Mini Bharati Ahirwar
- Department of Chemistry, Dr. Harisingh Gour Vishwavidyalaya, (A Central University), 470003, Sagar, India
| | - Milind M Deshmukh
- Department of Chemistry, Dr. Harisingh Gour Vishwavidyalaya, (A Central University), 470003, Sagar, India
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Yoshida D, Kita Y, Shimazaki T, Tachikawa M. A comprehensive theoretical study of positron binding and annihilation properties of hydrogen bonded binary molecular clusters. Phys Chem Chem Phys 2022; 24:26898-26907. [DOI: 10.1039/d2cp03813g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Small hydrogen inorganic molecules such as water have no positron binding ability. We revealed that their hydrogen bonded binary molecular clusters exhibit greater positron affinities due to the increased dipole moments and polarization effect.
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Affiliation(s)
- Daisuke Yoshida
- Nishina Center for Accelerator-Based Science, RIKEN, Hirosawa 2-1, Wako 351-0198, Japan
| | - Yukiumi Kita
- Quantum Chemistry Division, Yokohama City University, Seto 22-2, Kanazawa-ku, Yokohama 236-0027, Japan
| | - Tomomi Shimazaki
- Quantum Chemistry Division, Yokohama City University, Seto 22-2, Kanazawa-ku, Yokohama 236-0027, Japan
| | - Masanori Tachikawa
- Quantum Chemistry Division, Yokohama City University, Seto 22-2, Kanazawa-ku, Yokohama 236-0027, Japan
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Malloum A, Conradie J. Hydrogen bond networks of ammonia clusters: What we know and what we don’t know. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.116199] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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Malloum A, Conradie J. Accurate binding energies of ammonia clusters and benchmarking of hybrid DFT functionals. COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2021.113236] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Malloum A, Fifen JJ, Conradie J. Structures and spectroscopy of the ammonia eicosamer, (NH3)n=20. J Chem Phys 2018; 149:024304. [DOI: 10.1063/1.5031790] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
Affiliation(s)
- Alhadji Malloum
- Faculty of Science, Department of Physics, University of Ngaoundere, P.O. Box 454, Ngaoundere, Cameroon
| | - Jean Jules Fifen
- Faculty of Science, Department of Physics, University of Ngaoundere, P.O. Box 454, Ngaoundere, Cameroon
| | - Jeanet Conradie
- Department of Chemistry, University of the Free State, P.O. Box 339, Bloemfontein 9300, South Africa
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Malloum A, Fifen JJ, Dhaouadi Z, Engo SGN, Jaidane NE. Structures and relative stabilities of ammonia clusters at different temperatures: DFT vs. ab initio. Phys Chem Chem Phys 2015; 17:29226-42. [DOI: 10.1039/c5cp03374h] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The global minimum energy structures of (NH3)n=2–10are pointed out for the first time at a given temperature.
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Affiliation(s)
- Alhadji Malloum
- Department of Physics
- Faculty of Science
- University of Ngaoundere
- Ngaoundere 454
- Cameroon
| | - Jean Jules Fifen
- Department of Physics
- Faculty of Science
- University of Ngaoundere
- Ngaoundere 454
- Cameroon
| | - Zoubeida Dhaouadi
- Laboratoire de Spectroscopie Atomique Moléculaire et Applications
- Faculté des Sciences de Tunis
- Université de Tunis El Manar
- Tunis
- Tunisie
| | - Serge Guy Nana Engo
- Department of Physics
- Faculty of Science
- University of Ngaoundere
- Ngaoundere 454
- Cameroon
| | - Nejm-Eddine Jaidane
- Laboratoire de Spectroscopie Atomique Moléculaire et Applications
- Faculté des Sciences de Tunis
- Université de Tunis El Manar
- Tunis
- Tunisie
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7
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Gadre SR, Yeole SD, Sahu N. Quantum chemical investigations on molecular clusters. Chem Rev 2014; 114:12132-73. [PMID: 25341561 DOI: 10.1021/cr4006632] [Citation(s) in RCA: 147] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Shridhar R Gadre
- Department of Chemistry, Indian Institute of Technology Kanpur , Kanpur 208 016, India
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Oliveira BG, Costa TF, Araújo RCMU. A new theoretical analysis of the cooperative effect in T-shaped hydrogen complexes of CnHm∙∙∙HCN∙∙∙HW with n = 2, m = 2 or 4, and W = F or CN. J Mol Model 2013; 19:3551-68. [DOI: 10.1007/s00894-013-1867-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2013] [Accepted: 04/23/2013] [Indexed: 11/30/2022]
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9
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Young NA. Main group coordination chemistry at low temperatures: A review of matrix isolated Group 12 to Group 18 complexes. Coord Chem Rev 2013. [DOI: 10.1016/j.ccr.2012.10.013] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Case AS, Heid CG, Western CM, Crim FF. Determining the dissociation threshold of ammonia trimers from action spectroscopy of small clusters. J Chem Phys 2012; 136:124310. [DOI: 10.1063/1.3697480] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Yamanaka T, Tabayashi K, Takahashi O, Tanaka K, Namatame H, Taniguchi M. Core-to-Rydberg band shift and broadening of hydrogen bonded ammonia clusters studied with nitrogen K-edge excitation spectroscopy. J Chem Phys 2012; 136:014308. [DOI: 10.1063/1.3673778] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
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12
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Case AS, Heid CG, Kable SH, Crim FF. Dissociation energy and vibrational predissociation dynamics of the ammonia dimer. J Chem Phys 2011; 135:084312. [DOI: 10.1063/1.3625634] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Amanda S Case
- Department of Chemistry, University of Wisconsin - Madison, Madison, Wisconsin 53706, USA
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Toledo EJ, Custodio R, Ramalho TC, Porto MEG, Magriotis ZM. Electrical field effects on dipole moment, structure and energetic of (H2O)n (2⩽n⩽15) cluster. ACTA ACUST UNITED AC 2009. [DOI: 10.1016/j.theochem.2009.08.035] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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14
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Moilanen J, Ganesamoorthy C, Balakrishna MS, Tuononen HM. Weak Interactions between Trivalent Pnictogen Centers: Computational Analysis of Bonding in Dimers X3E···EX3 (E = Pnictogen, X = Halogen). Inorg Chem 2009; 48:6740-7. [DOI: 10.1021/ic900635f] [Citation(s) in RCA: 66] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Jani Moilanen
- Department of Chemistry, P.O. Box 35, FI-40014 University of Jyväskylä, Finland
| | - Chelladurai Ganesamoorthy
- Phosphorus Laboratory, Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400 076, India
| | - Maravanji S. Balakrishna
- Phosphorus Laboratory, Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400 076, India
| | - Heikki M. Tuononen
- Department of Chemistry, P.O. Box 35, FI-40014 University of Jyväskylä, Finland
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15
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Vrček V, Meštrić H. Chlorination of ammonia and aliphatic amines by Cl2: DFT study of medium and substituent effects. J PHYS ORG CHEM 2009. [DOI: 10.1002/poc.1425] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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16
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Ganesamoorthy C, Balakrishna MS, Mague JT, Tuononen HM. New Tetraphosphane Ligands {(X2P)2NC6H4N(PX2)2} (X = Cl, F, OMe, OC6H4OMe-o): Synthesis, Derivatization, Group 10 and 11 Metal Complexes and Catalytic Investigations. DFT Calculations on Intermolecular P···P Interactions in Halo-Phosphines. Inorg Chem 2008; 47:7035-47. [DOI: 10.1021/ic800724u] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Chelladurai Ganesamoorthy
- Phosphorus Laboratory, Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400 076, India, Department of Chemistry, Tulane University, New Orleans, Lousiana 70118, USA, and Department of Chemistry, P.O. Box 35, FI-40014 University of Jyväskylä, Finland
| | - Maravanji S. Balakrishna
- Phosphorus Laboratory, Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400 076, India, Department of Chemistry, Tulane University, New Orleans, Lousiana 70118, USA, and Department of Chemistry, P.O. Box 35, FI-40014 University of Jyväskylä, Finland
| | - Joel T. Mague
- Phosphorus Laboratory, Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400 076, India, Department of Chemistry, Tulane University, New Orleans, Lousiana 70118, USA, and Department of Chemistry, P.O. Box 35, FI-40014 University of Jyväskylä, Finland
| | - Heikki M. Tuononen
- Phosphorus Laboratory, Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400 076, India, Department of Chemistry, Tulane University, New Orleans, Lousiana 70118, USA, and Department of Chemistry, P.O. Box 35, FI-40014 University of Jyväskylä, Finland
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Lin W, Han JX, Takahashi LK, Loeser JG, Saykally RJ. Terahertz Vibration−Rotation−Tunneling Spectroscopy of the Ammonia Dimer. II. A−E States of an Out-of-Plane Vibration and an In-Plane Vibration. J Phys Chem A 2007; 111:9680-7. [PMID: 17824592 DOI: 10.1021/jp0725836] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Terahertz vibration-rotation-tunneling transitions have been measured between ca. 78.5 and 91.9 cm-1, and assigned to A-E (ortho-para) combinations of NH3 monomer states. The spectrum is complicated by inversion splittings that correlate to E symmetry monomer rovibronic states. Twenty progressions have been assigned to six excited states involving an out-of-plane vibration and an in-plane intermolecular vibration. The quality of the fit was affected by strong Coriolis interactions among these states and possibly an additional K = 2 state that was not explicitly observed in the data.
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Affiliation(s)
- Wei Lin
- Department of Chemistry, University of California, Berkeley, California 94720-1460, USA
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Altmann J, Ford T. Ab initio calculations of some weakly bound dimers and complexes: II. The complexes of carbon dioxide with water and hydrogen sulphide. ACTA ACUST UNITED AC 2007. [DOI: 10.1016/j.theochem.2007.05.010] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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19
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Brisdon AK, Flower KR, Pritchard RG. Raman spectrum of [Ru(CNBu t)(CO)(eta2-C6H4-2-CHO)(PPh3)2][BF4].2CDCl3 shows that the crystallographically determined bifurcated hydrogen-bonding interaction Cl3CD...F2BF2- is an example of a blue-shifting hydrogen bond. Inorg Chem 2007; 46:7189-92. [PMID: 17658879 DOI: 10.1021/ic701065w] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Raman data suggest that a crystallographically determined Cl3CD...F2BF2- interaction in the solid-state structure of [Ru(CNBut)(CO)(eta2-C6H4-2-CHO)(PPh3)2][BF4].2CDCl3 is an example of a blue-shifting bifurcated hydrogen bond. The nu(C-D) band blue-shifts 5 cm-1 to 2269 cm-1 compared to 2264 cm-1 for CDCl3 in the gas phase and 20 cm-1 from frozen CDCl3 at 2249 cm-1. A conventional interpretation of these band shifts would suggest that the CCl2 fragment of DCCl3 is a stronger hydrogen-bond acceptor than the BF2 fragment of a BF4- group.
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Affiliation(s)
- Alan K Brisdon
- School of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, U.K
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Fernández-Ramos A, Martínez-Núñez E, Vázquez SA, Ríos MA, Estévez CM, Merchán M, Serrano-Andrés L. Hydrogen Transfer vs Proton Transfer in 7-Hydroxy-quinoline·(NH3)3: A CASSCF/CASPT2 Study. J Phys Chem A 2007; 111:5907-12. [PMID: 17566997 DOI: 10.1021/jp072575p] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Multiconfigurational CASSCF and CASPT2 calculations were performed to investigate the enol --> keto tautomerization in the lowest singlet excited state of the 7-hydroxyquinoline.(NH3)3 cluster. Two different reaction mechanisms were explored. The first one corresponds to that proposed previously by Tanner et al. (Science 2003, 302, 1736) on the basis of experimental observations and CASSCF optimizations under Cs-symmetry constraints. This mechanism comprises four consecutive steps and involves nonadiabatic transitions between the valence 1pipi* state and a pisigma* Rydberg-type state, resulting in hydrogen-atom transfer. Single-point CASPT2 calculations corroborate that for Cs-symmetry pathways hydrogen-atom transfer is clearly preferred over proton transfer. The second mechanism, predicted by CASSCF optimizations without constraints, implies proton transfer along a pathway on the 1pipi* surface in which one or more ammonia molecules depart significantly from the molecular plane defined by the hydroxyquinoline ring. The results suggest that both mechanisms may be competitive with proton transfer being somewhat favorable over hydrogen-atom transfer.
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Affiliation(s)
- Antonio Fernández-Ramos
- Departamento de Química Física, Facultade de Química, Universidade de Santiago de Compostela, Santiago de Compostela, Spain
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Lin W, Han JX, Takahashi LK, Loeser JG, Saykally RJ. Terahertz Vibration−Rotation-Tunneling Spectroscopy of the Ammonia Dimer: Characterization of an out of Plane Vibration. J Phys Chem A 2006; 110:8011-6. [PMID: 16805485 DOI: 10.1021/jp060576w] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The terahertz vibration-rotation-tunneling (VRT) spectrum of the ammonia dimer (NH(3))(2) has been measured between ca. 78.5 and 91.9 cm(-1). The dipole-allowed transitions are separated into three groups that correspond to the 3-fold internal rotation of the NH(3) subunits. Transitions have been assigned for VRT states of the A-A (ortho-ortho) combinations of NH(3) monomer states. The spectrum is further complicated by strong Coriolis interactions. K = 0 <-- 0, K = 1 <-- 0, K = 0 <-- 1, and K = 1 <-- 1 progressions have been assigned. The band origins, rotational constants, asymmetry doubling, centrifugal distortion, and Coriolis coupling constant have been determined from the fit to an effective Hamiltonian. These VRT transitions are tentatively assigned to an out of plane vibration with a K = 0 state at 89.141305(47) cm(-1), and a K = 1 state at 86.77785(9) cm(-1).
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Affiliation(s)
- Wei Lin
- Department of Chemistry, University of California-Berkeley, Berkeley, CA 94720, USA
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Nxumalo L, Ngidi E, Ford T. The structures of some dimers of carbon monoxide—an infrared matrix isolation spectroscopic and ab initio molecular orbital study. J Mol Struct 2006. [DOI: 10.1016/j.molstruc.2005.09.044] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Wang GT, Creighton JR. Complex Formation of Trimethylaluminum and Trimethylgallium with Ammonia: Evidence for a Hydrogen-Bonded Adduct. J Phys Chem A 2005; 110:1094-9. [PMID: 16420013 DOI: 10.1021/jp054133o] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We have investigated the formation of gas-phase adducts of trimethylaluminum and trimethylgallium with ammonia using room-temperature Fourier transform infrared experiments and density functional theory calculations. Our results indicate for the first time that, at higher partial pressures, a product distinct from the well-known (CH3)3M:NH3 adduct grows in for both M = Al and M = Ga. Comparison of the experimental and calculated IR spectra, along with calculations of the energetics, indicates that this second product is the result of hydrogen bonding of a second NH3 molecule to the (CH3)3M:NH3 adduct and can be written as (CH3)3M:NH3...NH3. The binding energy of this hydrogen-bonded adduct is calculated to be 26.8 kcal/mol for M = Al and 18.4 kcal/mol for M = Ga and is lower in energy (more stable) relative to the 1:1 (CH3)3M:NH3 adduct by 7.2 kcal/mol for M = Al and 6.6 kcal/mol for M = Ga. In contrast, an alternative complex involving the formation of two separate M-N donor-acceptor bonds, which is written as H3N:(CH3)3M:NH3, is calculated to be lower in energy relative to (CH3)3M:NH3 by only 0.1 kcal/mol for M = Al and 0.2 kcal/mol for M = Ga and is not observed experimentally. These results show that hydrogen bonding plays an important role in the interaction of ammonia with metal organic precursors involving Al, Ga, and In, under typical metal organic chemical vapor deposition AlGaInN growth conditions.
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Affiliation(s)
- George T Wang
- Sandia National Laboratories, Sandia National Laboratories, P.O. Box 5800, MS-0601, Albuquerque, New Mexico 87185, USA.
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