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For: Pattanayak SK, Chowdhuri S. Effects of concentrated NaCl and KCl solutions on the behaviour of aqueous peptide bond environment: single-particle dynamics and H-bond structural relaxation. Mol Phys 2013. [DOI: 10.1080/00268976.2013.783240] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Number Cited by Other Article(s)
1
Parida C, Chowdhuri S. Effects of Hydrogen Peroxide on the Hydrogen Bonding Structure and Dynamics of Water and Its Influence on the Aqueous Solvation of the Insulin Monomer. J Phys Chem B 2023;127:10814-10823. [PMID: 38055728 DOI: 10.1021/acs.jpcb.3c05107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/08/2023]
2
Evaluation of binding performance of bioactive compounds against main protease and mutant model spike receptor binding domain of SARS-CoV-2: Docking, ADMET properties and molecular dynamics simulation study. J INDIAN CHEM SOC 2022. [PMCID: PMC8900880 DOI: 10.1016/j.jics.2022.100417] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
3
Zhao J, Dong T, Yu P, Wang J. Conformation and Metal Cation Binding of Zwitterionic Alanine Tripeptide in Saline Solutions by Infrared Vibrational Spectroscopy and Molecular Dynamics Simulations. J Phys Chem B 2021;126:161-173. [PMID: 34968072 DOI: 10.1021/acs.jpcb.1c10034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
4
Sahu SN, Satpathy SS, Mohanty C, Pattanayak SK. Computational study to evaluate the potency of phytochemicals in Boerhavia diffusa and the impact of point mutation on cyclin-dependent kinase 2-associated protein 1. J Biomol Struct Dyn 2021;40:8587-8601. [PMID: 33876720 DOI: 10.1080/07391102.2021.1914169] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
5
Synthesis of poly(Asparagine-co-phenylalanine) copolymers, analogy with thermosensitive poly(acrylamide-co-styrene) copolymers and formation of PEGylated nanoparticles. Eur Polym J 2020. [DOI: 10.1016/j.eurpolymj.2020.110033] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
6
Differing preferential ion binding to the peptide bond in ionic environment from classical and first principles molecular dynamics simulations. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2020.114257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
7
Molecular docking and molecular dynamics simulation studies on PLCE1 encoded protein. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.126936] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
8
Sahu SN, Moharana M, Sahu R, Pattanayak SK. Impact of mutation on podocin protein involved in type 2 nephrotic syndrome: Insights into docking and molecular dynamics simulation study. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.02.120] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
9
Panda J, Sahoo JK, Panda PK, Sahu SN, Samal M, Pattanayak SK, Sahu R. Adsorptive behavior of zeolitic imidazolate framework-8 towards anionic dye in aqueous media: Combined experimental and molecular docking study. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.01.033] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
10
Tang X, Bian Q, Wang Q, Zeng M. Adsorption behaviour of NaCl solution on the surface of MgO: a molecular dynamics study. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1509144] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
11
Baburkin PO, Komarov PV, Malyshev MD, Khizhnyak SD, Pakhomov PM. Computer simulation of structuring in aqueous L-cysteine–silver-nitrate solutions under the action of initiating salt. COLLOID JOURNAL 2017. [DOI: 10.1134/s1061933x17050039] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
12
Khizhnyak SD, Komarov PV, Ovchinnikov MM, Zherenkova LV, Pakhomov PM. Mechanism of gelation in low-concentration aqueous solutions of silver nitrate with l-cysteine and its derivatives. SOFT MATTER 2017;13:5168-5184. [PMID: 28664947 DOI: 10.1039/c7sm00772h] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
13
Non-thermal effects of microwave in sodium chloride aqueous solution: Insights from molecular dynamics simulations. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2016.11.126] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
14
Chand A, Chettiyankandy P, Pattanayak SK, Chowdhuri S. Effects of trimethylamine-N-oxide (TMAO) on aqueous N-methylacetamide solution: A comparison of different force fields of TMAO. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2016.05.044] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
15
Baburkin PO, Komarov PV, Khizhnyak SD, Pakhomov PM. Simulation of gelation process in cysteine–silver solution by dissipative particle dynamics method. COLLOID JOURNAL 2015. [DOI: 10.1134/s1061933x15050026] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
16
Effects of methanol on the hydrogen bonding structure and dynamics in aqueous N-methylacetamide solution. J Mol Liq 2014. [DOI: 10.1016/j.molliq.2014.01.012] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
17
Pattanayak SK, Chettiyankandy P, Chowdhuri S. Effects of co-solutes on the hydrogen bonding structure and dynamics in aqueous N-methylacetamide solution: a molecular dynamics simulations study. Mol Phys 2014. [DOI: 10.1080/00268976.2014.916822] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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