1
|
Sangiogo Gil E, Oppel M, Kottmann JS, González L. SHARC meets TEQUILA: mixed quantum-classical dynamics on a quantum computer using a hybrid quantum-classical algorithm. Chem Sci 2025; 16:596-609. [PMID: 39703417 PMCID: PMC11653199 DOI: 10.1039/d4sc04987j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2024] [Accepted: 11/27/2024] [Indexed: 12/21/2024] Open
Abstract
Recent developments in quantum computing are highly promising, particularly in the realm of quantum chemistry. Due to the noisy nature of currently available quantum hardware, hybrid quantum-classical algorithms have emerged as a reliable option for near-term simulations. Mixed quantum-classical dynamics methods effectively capture nonadiabatic effects by integrating classical nuclear dynamics with quantum chemical computations of the electronic properties. However, these methods face challenges due to the high computational cost of the quantum chemistry part. To mitigate the computational demand, we propose a method where the required electronic properties are computed through a hybrid quantum-classical approach that combines classical and quantum hardware. This framework employs the variational quantum eigensolver and variational quantum deflation algorithms to obtain ground and excited state energies, gradients, nonadiabatic coupling vectors, and transition dipole moments. These quantities are used to propagate the nonadiabatic molecular dynamics using the Tully's fewest switches surface hopping method, although the implementation is also compatible with other molecular dynamics approaches. The approach, implemented by integrating the molecular dynamics program package SHARC with the TEQUILA quantum computing framework, is validated by studying the cis-trans photoisomerization of methanimine and the electronic relaxation of ethylene. The results show qualitatively accurate molecular dynamics that align with experimental findings and other computational studies. This work is expected to mark a significant step towards achieving a "quantum advantage" for realistic chemical simulations.
Collapse
Affiliation(s)
- Eduarda Sangiogo Gil
- Faculty of Chemistry, Institute of Theoretical Chemistry, Universität Wien A-1090 Vienna Austria
| | - Markus Oppel
- Faculty of Chemistry, Institute of Theoretical Chemistry, Universität Wien A-1090 Vienna Austria
| | - Jakob S Kottmann
- Institute for Computer Science, Center for Advanced Analytics and Predictive Sciences, Universität Augsburg Augsburg Germany
| | - Leticia González
- Faculty of Chemistry, Institute of Theoretical Chemistry, Universität Wien A-1090 Vienna Austria
| |
Collapse
|
2
|
Boyer A, Humeniuk A, Karashima S, Suzuki T. Deuterium Isotope Effect on Internal Conversion of Ethylene Studied by Time-Resolved Photoelectron Spectroscopy. J Phys Chem A 2024; 128:7068-7072. [PMID: 39150990 DOI: 10.1021/acs.jpca.4c02647] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/18/2024]
Abstract
The effect of deuterium isotopes on the internal conversion of ethylene is studied by using extreme ultraviolet time-resolved photoelectron spectroscopy. For deuterium-labeled ethylene, the time scale for ultrafast internal conversion is increased by a factor of approximately √2, in agreement with the results of ab initio multiple spawning calculations, indicating the essential role played by hydrogen motion in the conversion process. Following internal conversion, a metastable species with an electron binding energy of ∼9 eV is produced, and it decays with a time constant similar to that for both isotopologues.
Collapse
Affiliation(s)
- Alexie Boyer
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-Ku, Kyoto 606-8502, Japan
| | - Alexander Humeniuk
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-Ku, Kyoto 606-8502, Japan
| | - Shutaro Karashima
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-Ku, Kyoto 606-8502, Japan
| | - Toshinori Suzuki
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-Ku, Kyoto 606-8502, Japan
| |
Collapse
|
3
|
Mukherjee S, Mattos RS, Toldo JM, Lischka H, Barbatti M. Prediction Challenge: Simulating Rydberg photoexcited cyclobutanone with surface hopping dynamics based on different electronic structure methods. J Chem Phys 2024; 160:154306. [PMID: 38624122 DOI: 10.1063/5.0203636] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Accepted: 03/28/2024] [Indexed: 04/17/2024] Open
Abstract
This research examines the nonadiabatic dynamics of cyclobutanone after excitation into the n → 3s Rydberg S2 state. It stems from our contribution to the Special Topic of the Journal of Chemical Physics to test the predictive capability of computational chemistry against unseen experimental data. Decoherence-corrected fewest-switches surface hopping was used to simulate nonadiabatic dynamics with full and approximated nonadiabatic couplings. Several simulation sets were computed with different electronic structure methods, including a multiconfigurational wavefunction [multiconfigurational self-consistent field (MCSCF)] specially built to describe dissociative channels, multireference semiempirical approach, time-dependent density functional theory, algebraic diagrammatic construction, and coupled cluster. MCSCF dynamics predicts a slow deactivation of the S2 state (10 ps), followed by an ultrafast population transfer from S1 to S0 (<100 fs). CO elimination (C3 channel) dominates over C2H4 formation (C2 channel). These findings radically differ from the other methods, which predicted S2 lifetimes 10-250 times shorter and C2 channel predominance. These results suggest that routine electronic structure methods may hold low predictive power for the outcome of nonadiabatic dynamics.
Collapse
Affiliation(s)
| | - Rafael S Mattos
- Aix Marseille University, CNRS, ICR, Marseille 13397, France
| | - Josene M Toldo
- Aix Marseille University, CNRS, ICR, Marseille 13397, France
| | - Hans Lischka
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409-1061, USA
| | - Mario Barbatti
- Aix Marseille University, CNRS, ICR, Marseille 13397, France
- Institut Universitaire de France, Paris 75231, France
| |
Collapse
|
4
|
Lu H, Azizi A, Mi XP, Wenjing Y, Peng Y, Xu T, Früchtl H, van Mourik T, Kirk SR, Jenkins S. Scoring molecular wires subject to an ultrafast laser pulse for molecular electronic devices. J Comput Chem 2023. [PMID: 37133985 DOI: 10.1002/jcc.27126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Revised: 04/19/2023] [Accepted: 04/19/2023] [Indexed: 05/04/2023]
Abstract
A nonionizing ultrafast laser pulse of 20-fs duration with a peak amplitude electric-field ±E = 200 × 10-4 a.u. was simulated. It was applied to the ethene molecule to consider its effect on the electron dynamics, both during the application of the laser pulse and for up to 100 fs after the pulse was switched off. Four laser pulse frequencies ω = 0.2692, 0.2808, 0.2830, and 0.2900 a.u. were chosen to correspond to excitation energies mid-way between the (S1 ,S2 ), (S2 ,S3 ), (S3 ,S4 ) and (S4 ,S5 ) electronic states, respectively. Scalar quantum theory of atoms in molecules (QTAIM) was used to quantify the shifts of the C1C2 bond critical points (BCPs). Depending on the frequencies ω selected, the C1C2 BCP shifts were up to 5.8 times higher after the pulse was switched off compared with a static E-field with the same magnitude. Next generation QTAIM (NG-QTAIM) was used to visualize and quantify the directional chemical character. In particular, polarization effects and bond strengths, in the form of bond-rigidity vs. bond-flexibility, were found, for some laser pulse frequencies, to increase after the laser pulse was switched off. Our analysis demonstrates that NG-QTAIM, in partnership with ultrafast laser irradiation, is useful as a tool in the emerging field of ultrafast electron dynamics, which will be essential for the design, and control of molecular electronic devices.
Collapse
Affiliation(s)
- Hui Lu
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, Hunan, China
| | - Alireza Azizi
- State Key Laboratory of Powder Metallurgy, School of Materials Science & Engineering, Central South University, Changsha, Hunan, China
| | - Xiao Peng Mi
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, Hunan, China
| | - Yu Wenjing
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, Hunan, China
| | - Yuting Peng
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, Hunan, China
| | - Tianlv Xu
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, Hunan, China
| | - Herbert Früchtl
- EaStCHEM School of Chemistry, University of Saint Andrews, Fife, Scotland, UK
| | - Tanja van Mourik
- EaStCHEM School of Chemistry, University of Saint Andrews, Fife, Scotland, UK
| | - Steven R Kirk
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, Hunan, China
| | - Samantha Jenkins
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, Hunan, China
| |
Collapse
|
5
|
Karashima S, Humeniuk A, Glover WJ, Suzuki T. Ultrafast Photoisomerization of Ethylene Studied Using Time-Resolved Extreme Ultraviolet Photoelectron Spectroscopy. J Phys Chem A 2022; 126:3873-3879. [PMID: 35696296 DOI: 10.1021/acs.jpca.2c02468] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The photoisomerization of isolated ethylene (ethene) was observed in real time from the Franck-Condon region in the 1ππ* state to ground-state products using time-resolved photoelectron spectroscopy with extreme ultraviolet (EUV, 21.7 eV) probe pulses. A combination of filamentation four-wave mixing and high-order harmonic generation was employed to obtain a temporal resolution of 31 ± 2 fs. The nuclear wave packet created by a 160 nm pump pulse accesses C═C twisted geometries within 10 fs, and the population transfer from the excited to the ground state occurs within the next 20-30 fs. Formation of vibrationally highly excited ground-state molecules was observed in less than 45 fs, and they decayed with two time constants of 0.87 and >5 ps. The interpretation of the photoelectron spectra is supported by vertical ionization energies calculated using XMS-CASPT2 along geodesically interpolated reaction paths from the Franck-Condon region to the products.
Collapse
Affiliation(s)
- Shutaro Karashima
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo, Kyoto 606-8502, Japan
| | - Alexander Humeniuk
- NYU Shanghai, 1555 Century Avenue, Shanghai 200122, China.,NYU-ECNU Center for Computational Chemistry at NYU Shanghai, 3663 Zhongshang Road North, Shanghai 200062, China
| | - William J Glover
- NYU Shanghai, 1555 Century Avenue, Shanghai 200122, China.,NYU-ECNU Center for Computational Chemistry at NYU Shanghai, 3663 Zhongshang Road North, Shanghai 200062, China.,Department of Chemistry, New York University, New York, New York 10003, United States
| | - Toshinori Suzuki
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo, Kyoto 606-8502, Japan
| |
Collapse
|
6
|
T. do Casal M, Toldo JM, Pinheiro Jr M, Barbatti M. Fewest switches surface hopping with Baeck-An couplings. OPEN RESEARCH EUROPE 2022; 1:49. [PMID: 37645211 PMCID: PMC10446015 DOI: 10.12688/openreseurope.13624.2] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 03/01/2022] [Indexed: 08/31/2023]
Abstract
In the Baeck-An (BA) approximation, first-order nonadiabatic coupling vectors are given in terms of adiabatic energy gaps and the second derivative of the gaps with respect to the coupling coordinate. In this paper, a time-dependent (TD) BA approximation is derived, where the couplings are computed from the energy gaps and their second time-derivatives. TD-BA couplings can be directly used in fewest switches surface hopping, enabling nonadiabatic dynamics with any electronic structure methods able to provide excitation energies and energy gradients. Test results of surface hopping with TD-BA couplings for ethylene and fulvene show that the TD-BA approximation delivers a qualitatively correct picture of the dynamics and a semiquantitative agreement with reference data computed with exact couplings. Nevertheless, TD-BA does not perform well in situations conjugating strong couplings and small velocities. Considered the uncertainties in the method, TD-BA couplings could be a competitive approach for inexpensive, exploratory dynamics with a small trajectories ensemble. We also assessed the potential use of TD-BA couplings for surface hopping dynamics with time-dependent density functional theory (TDDFT), but the results are not encouraging due to singlet instabilities near the crossing seam with the ground state.
Collapse
|
7
|
T. do Casal M, Toldo JM, Pinheiro Jr M, Barbatti M. Fewest switches surface hopping with Baeck-An couplings. OPEN RESEARCH EUROPE 2022; 1:49. [PMID: 37645211 PMCID: PMC10446015 DOI: 10.12688/openreseurope.13624.1] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 03/01/2022] [Indexed: 03/12/2024]
Abstract
In the Baeck-An (BA) approximation, first-order nonadiabatic coupling vectors are given in terms of adiabatic energy gaps and the second derivative of the gaps with respect to the coupling coordinate. In this paper, a time-dependent (TD) BA approximation is derived, where the couplings are computed from the energy gaps and their second time-derivatives. TD-BA couplings can be directly used in fewest switches surface hopping, enabling nonadiabatic dynamics with any electronic structure methods able to provide excitation energies and energy gradients. Test results of surface hopping with TD-BA couplings for ethylene and fulvene show that the TD-BA approximation delivers a qualitatively correct picture of the dynamics and a semiquantitative agreement with reference data computed with exact couplings. Nevertheless, TD-BA does not perform well in situations conjugating strong couplings and small velocities. Considered the uncertainties in the method, TD-BA couplings could be a competitive approach for inexpensive, exploratory dynamics with a small trajectories ensemble. We also assessed the potential use of TD-BA couplings for surface hopping dynamics with time-dependent density functional theory (TDDFT), but the results are not encouraging due to singlet instabilities near the crossing seam with the ground state.
Collapse
|
8
|
Westermayr J, Marquetand P. Machine Learning for Electronically Excited States of Molecules. Chem Rev 2021; 121:9873-9926. [PMID: 33211478 PMCID: PMC8391943 DOI: 10.1021/acs.chemrev.0c00749] [Citation(s) in RCA: 176] [Impact Index Per Article: 44.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Indexed: 12/11/2022]
Abstract
Electronically excited states of molecules are at the heart of photochemistry, photophysics, as well as photobiology and also play a role in material science. Their theoretical description requires highly accurate quantum chemical calculations, which are computationally expensive. In this review, we focus on not only how machine learning is employed to speed up such excited-state simulations but also how this branch of artificial intelligence can be used to advance this exciting research field in all its aspects. Discussed applications of machine learning for excited states include excited-state dynamics simulations, static calculations of absorption spectra, as well as many others. In order to put these studies into context, we discuss the promises and pitfalls of the involved machine learning techniques. Since the latter are mostly based on quantum chemistry calculations, we also provide a short introduction into excited-state electronic structure methods and approaches for nonadiabatic dynamics simulations and describe tricks and problems when using them in machine learning for excited states of molecules.
Collapse
Affiliation(s)
- Julia Westermayr
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Strasse 17, 1090 Vienna, Austria
| | - Philipp Marquetand
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Strasse 17, 1090 Vienna, Austria
- Vienna
Research Platform on Accelerating Photoreaction Discovery, University of Vienna, Währinger Strasse 17, 1090 Vienna, Austria
- Data
Science @ Uni Vienna, University of Vienna, Währinger Strasse 29, 1090 Vienna, Austria
| |
Collapse
|
9
|
Abstract
Electronically excited states of molecules are at the heart of photochemistry, photophysics, as well as photobiology and also play a role in material science. Their theoretical description requires highly accurate quantum chemical calculations, which are computationally expensive. In this review, we focus on not only how machine learning is employed to speed up such excited-state simulations but also how this branch of artificial intelligence can be used to advance this exciting research field in all its aspects. Discussed applications of machine learning for excited states include excited-state dynamics simulations, static calculations of absorption spectra, as well as many others. In order to put these studies into context, we discuss the promises and pitfalls of the involved machine learning techniques. Since the latter are mostly based on quantum chemistry calculations, we also provide a short introduction into excited-state electronic structure methods and approaches for nonadiabatic dynamics simulations and describe tricks and problems when using them in machine learning for excited states of molecules.
Collapse
Affiliation(s)
- Julia Westermayr
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Strasse 17, 1090 Vienna, Austria
| | - Philipp Marquetand
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Strasse 17, 1090 Vienna, Austria
- Vienna Research Platform on Accelerating Photoreaction Discovery, University of Vienna, Währinger Strasse 17, 1090 Vienna, Austria
- Data Science @ Uni Vienna, University of Vienna, Währinger Strasse 29, 1090 Vienna, Austria
| |
Collapse
|
10
|
Toldo JM, do Casal MT, Barbatti M. Mechanistic Aspects of the Photophysics of UVA Filters Based on Meldrum Derivatives. J Phys Chem A 2021; 125:5499-5508. [PMID: 34151555 DOI: 10.1021/acs.jpca.1c03315] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Skin photoprotection against UVA radiation is crucial, but it is hindered by the sparsity of approved commercial UVA filters. Sinapoyl malate (SM) derivatives are promising candidates for a new class of UVA filters. They have been previously identified as an efficient photoprotective sunscreen in plants due to their fast nonradiative energy dissipation. Combining experimental and computational results, in our previous letter (J. Phys. Chem. Lett. 2021, 12, 337-344) we showed that coumaryl Meldrum (CMe) and sinapoyl Meldrum (SMe) are outstanding candidates for UVA filters in sunscreen formulations. Here, we deliver a comprehensive computational characterization of the excited-state dynamics of these molecules. Using reaction pathways and excited-state dynamics simulations, we could elucidate the photodeactivation mechanism of these molecules. Upon photoexcitation, they follow a two-step logistic decay. First, an ultrafast and efficient relaxation stabilizes the excited state alongside a 90° twisting around the allylic double bond, giving rise to a minimum with a twisted intramolecular excited-state (TICT) character. From this minimum, internal conversion to the ground state occurs after overcoming a 0.2 eV barrier. Minor differences in the nonradiative decay and fluorescence of CMe and SMe are associated with an additional minimum present only in the latter.
Collapse
Affiliation(s)
- Josene M Toldo
- Aix Marseille Université, CNRS, ICR, Av. Esc. Normandie-Niemen BJ5-D22, Marseille 13397, France
| | - Mariana T do Casal
- Aix Marseille Université, CNRS, ICR, Av. Esc. Normandie-Niemen BJ5-D22, Marseille 13397, France
| | - Mario Barbatti
- Aix Marseille Université, CNRS, ICR, Av. Esc. Normandie-Niemen BJ5-D22, Marseille 13397, France
| |
Collapse
|
11
|
Barbatti M. Velocity Adjustment in Surface Hopping: Ethylene as a Case Study of the Maximum Error Caused by Direction Choice. J Chem Theory Comput 2021; 17:3010-3018. [PMID: 33844922 DOI: 10.1021/acs.jctc.1c00012] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
The most common surface hopping dynamics algorithms require velocity adjustment after hopping to ensure total-energy conservation. Based on the semiclassical analysis, this adjustment must be made parallel to the nonadiabatic coupling vector's direction. Nevertheless, this direction is not always known, and the common practice has been to adjust the velocity in either the linear momentum or velocity directions. This paper benchmarks surface hopping dynamics of photoexcited ethylene with velocity adjustment in several directions, including those of the nonadiabatic coupling vector, the momentum, and the energy gradient difference. It is shown that differences in time constants and structural evolution fall within the statistical uncertainty of the method considering up to 500 trajectories in each dynamics set, rendering the three approaches statistically equivalent. For larger ensembles beyond 1000 trajectories, significant differences between the results arise, limiting the validity of adjustment in alternative directions. Other possible adjustment directions (velocity, single-state gradients, angular momentum) are evaluated as well. Given the small size of ethylene, the results reported in this paper should be considered an upper limit for the error caused by the choice of the velocity-adjustment direction on surface hopping dynamics.
Collapse
|
12
|
Mališ M, Luber S. Trajectory Surface Hopping Nonadiabatic Molecular Dynamics with Kohn–Sham ΔSCF for Condensed-Phase Systems. J Chem Theory Comput 2020; 16:4071-4086. [DOI: 10.1021/acs.jctc.0c00372] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Momir Mališ
- University of Zurich, Department of Chemistry, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
| | - Sandra Luber
- University of Zurich, Department of Chemistry, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
| |
Collapse
|
13
|
Lischka H, Shepard R, Müller T, Szalay PG, Pitzer RM, Aquino AJA, Araújo do Nascimento MM, Barbatti M, Belcher LT, Blaudeau JP, Borges I, Brozell SR, Carter EA, Das A, Gidofalvi G, González L, Hase WL, Kedziora G, Kertesz M, Kossoski F, Machado FBC, Matsika S, do Monte SA, Nachtigallová D, Nieman R, Oppel M, Parish CA, Plasser F, Spada RFK, Stahlberg EA, Ventura E, Yarkony DR, Zhang Z. The generality of the GUGA MRCI approach in COLUMBUS for treating complex quantum chemistry. J Chem Phys 2020; 152:134110. [PMID: 32268762 DOI: 10.1063/1.5144267] [Citation(s) in RCA: 43] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
The core part of the program system COLUMBUS allows highly efficient calculations using variational multireference (MR) methods in the framework of configuration interaction with single and double excitations (MR-CISD) and averaged quadratic coupled-cluster calculations (MR-AQCC), based on uncontracted sets of configurations and the graphical unitary group approach (GUGA). The availability of analytic MR-CISD and MR-AQCC energy gradients and analytic nonadiabatic couplings for MR-CISD enables exciting applications including, e.g., investigations of π-conjugated biradicaloid compounds, calculations of multitudes of excited states, development of diabatization procedures, and furnishing the electronic structure information for on-the-fly surface nonadiabatic dynamics. With fully variational uncontracted spin-orbit MRCI, COLUMBUS provides a unique possibility of performing high-level calculations on compounds containing heavy atoms up to lanthanides and actinides. Crucial for carrying out all of these calculations effectively is the availability of an efficient parallel code for the CI step. Configuration spaces of several billion in size now can be treated quite routinely on standard parallel computer clusters. Emerging developments in COLUMBUS, including the all configuration mean energy multiconfiguration self-consistent field method and the graphically contracted function method, promise to allow practically unlimited configuration space dimensions. Spin density based on the GUGA approach, analytic spin-orbit energy gradients, possibilities for local electron correlation MR calculations, development of general interfaces for nonadiabatic dynamics, and MRCI linear vibronic coupling models conclude this overview.
Collapse
Affiliation(s)
- Hans Lischka
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, USA
| | - Ron Shepard
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - Thomas Müller
- Institute for Advanced Simulation, Jülich Supercomputing Centre, Forschungszentrum Jülich, Jülich 52428, Germany
| | - Péter G Szalay
- ELTE Eötvös Loránd University, Institute of Chemistry, Budapest, Hungary
| | - Russell M Pitzer
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, USA
| | - Adelia J A Aquino
- School of Pharmaceutical Sciences and Technology, Tianjin University, Tianjin 300072, People's Republic of China
| | | | | | - Lachlan T Belcher
- Laser and Optics Research Center, Department of Physics, US Air Force Academy, Colorado 80840, USA
| | | | - Itamar Borges
- Departamento de Química, Instituto Militar de Engenharia, Rio de Janeiro, RJ 22290-270, Brazil
| | - Scott R Brozell
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - Emily A Carter
- Office of the Chancellor and Department of Chemical and Biomolecular Engineering, University of California, Los Angeles, Box 951405, Los Angeles, California 90095-1405, USA
| | - Anita Das
- Indian Institute of Engineering Science and Technology, Shibpur, Howrah, India
| | - Gergely Gidofalvi
- Department of Chemistry and Biochemistry, Gonzaga University, Spokane, Washington 99258, USA
| | - Leticia González
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria
| | - William L Hase
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, USA
| | - Gary Kedziora
- Air Force Research Laboratory, Wright-Patterson Air Force Base, Ohio 45433, USA
| | - Miklos Kertesz
- Department of Chemistry, Georgetown University, 37th and O Streets, NW, Washington, DC 20057-1227, USA
| | | | - Francisco B C Machado
- Departamento de Química, Instituto Tecnológico de Aeronáutica, São José dos Campos 12228-900, São Paulo, Brazil
| | - Spiridoula Matsika
- Department of Chemistry, Temple University, 1901 N. 13th St., Philadelphia, Pennsylvania 19122, USA
| | | | - Dana Nachtigallová
- Institute of Organic Chemistry and Biochemistry v.v.i., The Czech Academy of Sciences, Flemingovo nám. 2, 160610 Prague 6, Czech Republic
| | - Reed Nieman
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, USA
| | - Markus Oppel
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria
| | - Carol A Parish
- Department of Chemistry, Gottwald Center for the Sciences, University of Richmond, Richmond, Virginia 23173, USA
| | - Felix Plasser
- Department of Chemistry, Loughborough University, Loughborough LE11 3TU, United Kingdom
| | - Rene F K Spada
- Departamento de Física, Instituto Tecnológico de Aeronáutica, São José dos Campos 12228-900, São Paulo, Brazil
| | - Eric A Stahlberg
- Biomedical Informatics and Data Science, Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, USA
| | - Elizete Ventura
- Universidade Federal da Paraíba, 58059-900 João Pessoa, PB, Brazil
| | - David R Yarkony
- Department of Chemistry, Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218, USA
| | - Zhiyong Zhang
- Stanford Research Computing Center, Stanford University, 255 Panama Street, Stanford, California 94305, USA
| |
Collapse
|
14
|
Ibele LM, Curchod BFE. A molecular perspective on Tully models for nonadiabatic dynamics. Phys Chem Chem Phys 2020; 22:15183-15196. [DOI: 10.1039/d0cp01353f] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
We present a series of standardized molecular tests for nonadiabatic dynamics, reminiscent of the one-dimensional Tully models proposed in 1990.
Collapse
Affiliation(s)
- Lea M. Ibele
- Department of Chemistry
- Durham University
- Durham DH1 3LE
- UK
| | | |
Collapse
|
15
|
Wu JI, Eikema Hommes NJ, Lenoir D, Bachrach SM. The quest for a triplet ground‐state alkene: Highly twisted C═C double bonds. J PHYS ORG CHEM 2019. [DOI: 10.1002/poc.3965] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Judy I. Wu
- Department of Chemistry University of Houston Houston TX USA
| | - Nico J.R. Eikema Hommes
- Computer Chemistry Center, Department of Chemistry and Pharmacy Friedrich‐Alexander University Erlangen‐Nürnberg Erlangen Germany
| | - Dieter Lenoir
- Helmholtz Center München, Molecular Exposomics Neuherberg Germany
| | | |
Collapse
|
16
|
Gómez S, Ibele LM, González L. The 3s Rydberg state as a doorway state in the ultrafast dynamics of 1,1-difluoroethylene. Phys Chem Chem Phys 2019; 21:4871-4878. [DOI: 10.1039/c8cp07766e] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The deactivation dynamics of 1,1-difluoroethylene after light excitation is studied within the surface hopping formalism in the presence of 3s and 3p Rydberg states using multi-state second order perturbation theory (MS-CASPT2).
Collapse
Affiliation(s)
- Sandra Gómez
- Institute for Theoretical Chemistry
- Faculty of Chemistry
- University of Vienna
- 1090 Vienna
- Austria
| | - Lea M. Ibele
- Institute for Theoretical Chemistry
- Faculty of Chemistry
- University of Vienna
- 1090 Vienna
- Austria
| | - Leticia González
- Institute for Theoretical Chemistry
- Faculty of Chemistry
- University of Vienna
- 1090 Vienna
- Austria
| |
Collapse
|
17
|
Ashfold MNR, Ingle RA, Karsili TNV, Zhang J. Photoinduced C–H bond fission in prototypical organic molecules and radicals. Phys Chem Chem Phys 2019; 21:13880-13901. [DOI: 10.1039/c8cp07454b] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
We survey and assess current knowledge regarding the primary photochemistry of hydrocarbon molecules and radicals.
Collapse
Affiliation(s)
| | | | | | - Jingsong Zhang
- Department of Chemistry
- University of California at Riverside
- Riverside
- USA
| |
Collapse
|
18
|
Pradhan E, Sato K, Akimov AV. Non-adiabatic molecular dynamics with ΔSCF excited states. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2018; 30:484002. [PMID: 30407924 DOI: 10.1088/1361-648x/aae864] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Accurate modelling of nonadiabatic transitions and electron-phonon interactions in extended systems is essential for understanding the charge and energy transfer in photovoltaic and photocatalytic materials. The extensive computational costs of the advanced excited state methods have stimulated the development of many approximations to study the nonadiabatic molecular dynamics (NA-MD) in solid-state and molecular materials. In this work, we present a novel ▵SCF-NA-MD methodology that aims to account for electron-hole interactions and electron-phonon back-reaction critical in modelling photoinduced nuclear dynamics. The excited states dynamics is described using the delta self-consistent field (▵SCF) technique within the density functional formalism and the trajectory surface hopping. The technique is implemented in the open-source Libra-X package freely available on the Internet (https://github.com/Quantum-Dynamics-Hub/Libra-X). This work illustrates the general utility of the developed ▵SCF-NA-MD methodology by characterizing the excited state energies and lifetimes, reorganization energies, photoisomerization quantum yields, and by providing the mechanistic details of reactive processes in a number of organic molecules.
Collapse
Affiliation(s)
- Ekadashi Pradhan
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, NY 14260-3000, United States of America
| | | | | |
Collapse
|
19
|
Crespo-Otero R, Barbatti M. Recent Advances and Perspectives on Nonadiabatic Mixed Quantum–Classical Dynamics. Chem Rev 2018; 118:7026-7068. [DOI: 10.1021/acs.chemrev.7b00577] [Citation(s) in RCA: 301] [Impact Index Per Article: 43.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Rachel Crespo-Otero
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, United Kingdom
| | | |
Collapse
|
20
|
Affiliation(s)
- Basile F. E. Curchod
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, United Kingdom
| | - Todd J. Martínez
- Department of Chemistry and PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| |
Collapse
|
21
|
Hollas D, Šištík L, Hohenstein EG, Martínez TJ, Slavíček P. Nonadiabatic Ab Initio Molecular Dynamics with the Floating Occupation Molecular Orbital-Complete Active Space Configuration Interaction Method. J Chem Theory Comput 2017; 14:339-350. [DOI: 10.1021/acs.jctc.7b00958] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Daniel Hollas
- Department
of Physical Chemistry, University of Chemistry and Technology, Prague, Technická 5, 16628 Prague 6, Czech Republic
| | - Lukáš Šištík
- Department
of Physical Chemistry, University of Chemistry and Technology, Prague, Technická 5, 16628 Prague 6, Czech Republic
| | - Edward G. Hohenstein
- Department
of Chemistry and Biochemistry, The City College of New York, New York, New York 10031, United States
- PhD
Program in Chemistry, The Graduate Center of the City University of New York, New York, New York 10016, United States
| | - Todd J. Martínez
- Department
of Chemistry and the PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Petr Slavíček
- Department
of Physical Chemistry, University of Chemistry and Technology, Prague, Technická 5, 16628 Prague 6, Czech Republic
- J. Heyrovský Institute of Physical Chemistry, Dolejškova 3, 18223 Prague 8, Czech Republic
| |
Collapse
|
22
|
Lefrancois D, Tuna D, Martínez TJ, Dreuw A. The Spin-Flip Variant of the Algebraic-Diagrammatic Construction Yields the Correct Topology of S1/S0 Conical Intersections. J Chem Theory Comput 2017; 13:4436-4441. [DOI: 10.1021/acs.jctc.7b00634] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Daniel Lefrancois
- Interdisciplinary
Center for Scientific Computing, Ruprecht-Karls University, Im Neuenheimer
Feld 205, 69120 Heidelberg, Germany
| | - Deniz Tuna
- Max-Planck-Institut für Kohlenforschung, 45470 Mülheim an der Ruhr, Germany
| | - Todd J. Martínez
- Department
of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Andreas Dreuw
- Interdisciplinary
Center for Scientific Computing, Ruprecht-Karls University, Im Neuenheimer
Feld 205, 69120 Heidelberg, Germany
| |
Collapse
|
23
|
Fundamental Limits on Spatial Resolution in Ultrafast X-ray Diffraction. APPLIED SCIENCES-BASEL 2017. [DOI: 10.3390/app7060534] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
|
24
|
Geng T, Schalk O, Neville SP, Hansson T, Thomas RD. Dynamics in higher lying excited states: Valence to Rydberg transitions in the relaxation paths of pyrrole and methylated derivatives. J Chem Phys 2017; 146:144307. [DOI: 10.1063/1.4979681] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Ting Geng
- Department of Physics, AlbaNova University Centre, Stockholm University, Roslagstullsbacken 21, 106 91 Stockholm, Sweden
| | - Oliver Schalk
- Department of Physics, AlbaNova University Centre, Stockholm University, Roslagstullsbacken 21, 106 91 Stockholm, Sweden
| | - Simon P. Neville
- Department of Chemistry, University of Ottawa, 10 Marie Curie, Ottawa, Ontario K1N 6N5, Canada
| | - Tony Hansson
- Department of Physics, AlbaNova University Centre, Stockholm University, Roslagstullsbacken 21, 106 91 Stockholm, Sweden
| | - Richard D. Thomas
- Department of Physics, AlbaNova University Centre, Stockholm University, Roslagstullsbacken 21, 106 91 Stockholm, Sweden
| |
Collapse
|
25
|
Pijeau S, Hohenstein EG. Improved Complete Active Space Configuration Interaction Energies with a Simple Correction from Density Functional Theory. J Chem Theory Comput 2017; 13:1130-1146. [DOI: 10.1021/acs.jctc.6b00893] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Shiela Pijeau
- Department
of Chemistry and Biochemistry, The City College of New York, New York, New York 10031, United States
| | - Edward G. Hohenstein
- Department
of Chemistry and Biochemistry, The City College of New York, New York, New York 10031, United States
- Ph.D.
Program in Chemistry, The City University of New York, New York, New York 10016, United States
| |
Collapse
|
26
|
Oruganti B, Durbeej B. On the possibility to accelerate the thermal isomerizations of overcrowded alkene-based rotary molecular motors with electron-donating or electron-withdrawing substituents. J Mol Model 2016; 22:219. [PMID: 27553304 PMCID: PMC4995225 DOI: 10.1007/s00894-016-3085-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2016] [Accepted: 08/05/2016] [Indexed: 12/01/2022]
Abstract
We employ computational methods to investigate the possibility of using electron-donating or electron-withdrawing substituents to reduce the free-energy barriers of the thermal isomerizations that limit the rotational frequencies achievable by synthetic overcrowded alkene-based molecular motors. Choosing as reference systems one of the fastest motors known to date and two variants thereof, we consider six new motors obtained by introducing electron-donating methoxy and dimethylamino or electron-withdrawing nitro and cyano substituents in conjugation with the central olefinic bond connecting the two (stator and rotator) motor halves. Performing density functional theory calculations, we then show that electron-donating (but not electron-withdrawing) groups at the stator are able to reduce the already small barriers of the reference motors by up to 18 kJ mol(-1). This result outlines a possible strategy for improving the rotational frequencies of motors of this kind. Furthermore, exploring the origin of the catalytic effect, it is found that electron-donating groups exert a favorable steric influence on the thermal isomerizations, which is not manifested by electron-withdrawing groups. This finding suggests a new mechanism for controlling the critical steric interactions of these motors. Graphical Abstract The introduction of electron-donating groups in one of the fastest rotary molecular motors known to date is found to reduce the free-energy barriers of the thermal steps that limit the rotational frequencies by up to 18 kJ mol(-1).
Collapse
Affiliation(s)
- Baswanth Oruganti
- Division of Theoretical Chemistry, IFM, Linköping University, SE-581 83, Linköping, Sweden
| | - Bo Durbeej
- Division of Theoretical Chemistry, IFM, Linköping University, SE-581 83, Linköping, Sweden.
| |
Collapse
|
27
|
Guo X, Yuan H, Zhu Q, An B, Zhang J. Ab initioinsights on photophysics of 9-methylhypoxanthine. Mol Phys 2016. [DOI: 10.1080/00268976.2016.1164348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
|
28
|
Akimov AV. Libra: An open-Source “methodology discovery” library for quantum and classical dynamics simulations. J Comput Chem 2016; 37:1626-49. [DOI: 10.1002/jcc.24367] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2015] [Revised: 02/03/2016] [Accepted: 03/02/2016] [Indexed: 01/10/2023]
Affiliation(s)
- Alexey V. Akimov
- Department of Chemistry; University at Buffalo, the State University of New York; Buffalo, New York 14260-3000
| |
Collapse
|
29
|
Champenois EG, Shivaram NH, Wright TW, Yang CS, Belkacem A, Cryan JP. Involvement of a low-lying Rydberg state in the ultrafast relaxation dynamics of ethylene. J Chem Phys 2016; 144:014303. [DOI: 10.1063/1.4939220] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Elio G. Champenois
- Graduate Group in Applied Science and Technology, University of California, Berkeley, California 94720, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Niranjan H. Shivaram
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Travis W. Wright
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
- Department of Chemistry, University of California at Davis, Davis, California 95616, USA
| | - Chan-Shan Yang
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
- Department of Physics, National Tsing Hua University, Hsinchu 30013, Taiwan
| | - Ali Belkacem
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - James P. Cryan
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
- PULSE Institute for Ultrafast Energy Science, SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| |
Collapse
|
30
|
Prlj A, Došlić N, Corminboeuf C. How does tetraphenylethylene relax from its excited states? Phys Chem Chem Phys 2016; 18:11606-9. [DOI: 10.1039/c5cp04546k] [Citation(s) in RCA: 81] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Photocyclization play a key role in the deactivation mechanism of tetraphenylethylene.
Collapse
Affiliation(s)
- Antonio Prlj
- Institut des Sciences et Ingénierie Chimiques
- École Polytechnique Fédérale de Lausanne
- CH-1015 Lausanne
- Switzerland
| | - Nađa Došlić
- Department of Physical Chemistry
- Ruđer Bošković Institute
- HR-10000 Zagreb
- Croatia
| | - Clémence Corminboeuf
- Institut des Sciences et Ingénierie Chimiques
- École Polytechnique Fédérale de Lausanne
- CH-1015 Lausanne
- Switzerland
| |
Collapse
|
31
|
Kobayashi T, Horio T, Suzuki T. Ultrafast Deactivation of the ππ*(V) State of Ethylene Studied Using Sub-20 fs Time-Resolved Photoelectron Imaging. J Phys Chem A 2015; 119:9518-23. [DOI: 10.1021/acs.jpca.5b06094] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Takufumi Kobayashi
- Department of Chemistry,
Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-Ku, Kyoto 606-8502, Japan
| | - Takuya Horio
- Department of Chemistry,
Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-Ku, Kyoto 606-8502, Japan
| | - Toshinori Suzuki
- Department of Chemistry,
Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-Ku, Kyoto 606-8502, Japan
| |
Collapse
|
32
|
Hohenstein EG, Bouduban MEF, Song C, Luehr N, Ufimtsev IS, Martínez TJ. Analytic first derivatives of floating occupation molecular orbital-complete active space configuration interaction on graphical processing units. J Chem Phys 2015; 143:014111. [DOI: 10.1063/1.4923259] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Edward G. Hohenstein
- Department of Chemistry and the PULSE Institute,
Stanford University, Stanford, California 94305,
USA
- SLAC National Accelerator Laboratory, Menlo Park, California 94025,
USA
| | - Marine E. F. Bouduban
- Department of Chemistry and the PULSE Institute,
Stanford University, Stanford, California 94305,
USA
- SLAC National Accelerator Laboratory, Menlo Park, California 94025,
USA
- Group for Photochemical Dynamics, Institute of Chemical
Sciences and Engineering, École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland
| | - Chenchen Song
- Department of Chemistry and the PULSE Institute,
Stanford University, Stanford, California 94305,
USA
- SLAC National Accelerator Laboratory, Menlo Park, California 94025,
USA
| | - Nathan Luehr
- Department of Chemistry and the PULSE Institute,
Stanford University, Stanford, California 94305,
USA
- SLAC National Accelerator Laboratory, Menlo Park, California 94025,
USA
| | - Ivan S. Ufimtsev
- Department of Chemistry and the PULSE Institute,
Stanford University, Stanford, California 94305,
USA
- SLAC National Accelerator Laboratory, Menlo Park, California 94025,
USA
| | - Todd J. Martínez
- Department of Chemistry and the PULSE Institute,
Stanford University, Stanford, California 94305,
USA
- SLAC National Accelerator Laboratory, Menlo Park, California 94025,
USA
| |
Collapse
|
33
|
|
34
|
Borges I, Aquino AJA, Lischka H. A multireference configuration interaction study of the photodynamics of nitroethylene. J Phys Chem A 2014; 118:12011-20. [PMID: 25158277 PMCID: PMC4279882 DOI: 10.1021/jp507396e] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
![]()
Extended multireference configuration
interaction with singles
and doubles (MR-CISD) calculations of nitroethylene (H2C=CHNO2) were carried out to investigate the photodynamical
deactivation paths to the ground state. The ground (S0)
and the first five valence excited electronic states (S1–S5) were investigated. In the first step, vertical
excitations and potential energy curves for CH2 and NO2 torsions and CH2 out-of-plane bending starting
from the ground state geometry were computed. Afterward, five conical
intersections, one between each pair of adjacent states, were located.
The vertical calculations mostly confirm the previous assignment of
experimental spectrum and theoretical results using lower-level calculations.
The conical intersections have as main features the torsion of the
CH2 moiety, different distortions of the NO2 group and CC, CN, and NO bond stretchings. In these conical intersections,
the NO2 group plays an important role, also seen in excited
state investigations of other nitro molecules. Based on the conical
intersections found, a photochemical nonradiative deactivation process
after a π–π* excitation to the bright S5 state is proposed. In particular, the possibility of NO2 release in the ground state, an important property in nitro explosives,
was found to be possible.
Collapse
Affiliation(s)
- Itamar Borges
- Departamento de Química, Instituto Militar de Engenharia Praça General Tibúrcio , 80, 22290-270 Rio de Janeiro, Brazil
| | | | | |
Collapse
|
35
|
Blancafort L. Photochemistry and photophysics at extended seams of conical intersection. Chemphyschem 2014; 15:3166-81. [PMID: 25157686 DOI: 10.1002/cphc.201402359] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2014] [Indexed: 11/07/2022]
Abstract
The role of extended seams of conical intersection in excited-state mechanisms is reviewed. Seams are crossings of the potential energy surface in many dimensions where the decay from the excited to the ground state can occur, and the extended seam is composed of different segments lying along a reaction coordinate. Every segment is associated with a different primary photoproduct, which gives rise to competing pathways. This idea is first illustrated for fulvene and ethylene, and then it is used to explain more complex cases such as the dependence of the isomerisation of retinal chromophore isomers on the protein environment, the dependence of the efficiency of the azobenzene photochemical switch on the wavelength of irradiation and the direction of the isomerisation, and the coexistence of different mechanisms in the photo-induced Wolff rearrangement of diazonaphthoquinone. The role of extended seams in the photophysics of the DNA nucleobases and the relationship between two-state seams and three-state crossings is also discussed. As an outlook, the design of optical control strategies based on the passage of the excited molecule through the seam is considered, and it is shown how the excited-state lifetime of fulvene can be modulated by shaping the energy of the seam.
Collapse
Affiliation(s)
- Lluís Blancafort
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, Campus de Montilivi, 17071 Girona (Spain).
| |
Collapse
|
36
|
Mullinax JW, Sokolov AY, Schaefer HF. Conical intersections and low-lying electronic states of tetrafluoroethylene. Chemphyschem 2014; 15:2359-66. [PMID: 24849939 DOI: 10.1002/cphc.201402073] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2014] [Indexed: 11/10/2022]
Abstract
The low-lying electronic states of tetrafluoroethylene (C2 F4 ) are characterized theoretically for the first time using equation-of-motion coupled cluster theory (EOM-CCSD), and complete active space self-consistent field (CASSCF) and second-order perturbation theory (CASPT2). Computations are performed for vertical excitation energies, equilibrium geometries, minimum-energy conical intersections, and potential energy curves along three geometric coordinates: 1) twisting of the FCCF dihedral angle, 2) pyramidalization of the CF2 group, and 3) migration of a fluorine atom resulting in an ethylidene-like (CF3 CF) structure. The results suggest two relaxation pathways from the Rydberg-3s excited electronic state to the ground state. These relaxation pathways are discussed in conjunction with the femtosecond photoionization spectroscopy results of Trushin et al. [ChemPhysChem- 2004, 5, 1389].
Collapse
Affiliation(s)
- J Wayne Mullinax
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602 (USA).
| | | | | |
Collapse
|
37
|
Softley T. Announcement of the winner of the Longuet-Higgins Young Author's Prize 2013. Mol Phys 2014. [DOI: 10.1080/00268976.2014.936156] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
|
38
|
Okoshi M, Nakai H. Acceleration of self-consistent field convergence inab initiomolecular dynamics simulation with multiconfigurational wave function. J Comput Chem 2014; 35:1473-80. [DOI: 10.1002/jcc.23617] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2014] [Revised: 04/07/2014] [Accepted: 04/10/2014] [Indexed: 10/25/2022]
Affiliation(s)
- Masaki Okoshi
- Department of Chemistry and Biochemistry, School of Advanced Science and Engineering; Waseda University; Tokyo 169-8555 Japan
| | - Hiromi Nakai
- Department of Chemistry and Biochemistry, School of Advanced Science and Engineering; Waseda University; Tokyo 169-8555 Japan
- Research Institute for Science and Engineering; Waseda University; Tokyo 169-8555 Japan
- CREST, Japan Science and Technology Agency; Saitama 332-0012 Japan
- ESICB; Kyoto University, Kyotodaigaku-Katsura; Kyoto 615-8520 Japan
| |
Collapse
|
39
|
Szabla R, Góra RW, Sponer J, Sponer JE. Molecular mechanism of diaminomaleonitrile to diaminofumaronitrile photoisomerization: an intermediate step in the prebiotic formation of purine nucleobases. Chemistry 2014; 20:2515-21. [PMID: 24470085 DOI: 10.1002/chem.201304224] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2013] [Indexed: 11/09/2022]
Abstract
The photoinduced isomerization of diaminomaleonitrile (DAMN) to diaminofumaronitrile (DAFN) was suggested to play a key role in the prebiotically plausible formation of purine nucleobases and nucleotides. In this work we analyze two competitive photoisomerization mechanisms on the basis of state-of-the-art quantum-chemical calculations. Even though it was suggested that this process might occur on the triplet potential-energy surface, our results indicate that the singlet reaction channel should not be disregarded either. In fact, the peaked topography of the S1 /S0 conical intersection suggests that the deexcitation should most likely occur on a sub-picosecond timescale and the singlet photoisomerization mechanism might effectively compete even with a very efficient intersystem crossing. Such a scenario is further supported by the relatively small spin-orbit coupling of the S1 and T2 states in the Franck-Condon region, which does not indicate a very effective triplet bypass for this photoreaction. Therefore, we conclude that the triplet reaction channel in DAMN might not be as prominent as was previously thought.
Collapse
Affiliation(s)
- Rafał Szabla
- Institute of Biophysics, Academy of Sciences of the Czech Republic, Královopolská 135, 61265 Brno (Czech Republic).
| | | | | | | |
Collapse
|
40
|
Tuna D, Sobolewski AL, Domcke W. Photochemical Mechanisms of Radiationless Deactivation Processes in Urocanic Acid. J Phys Chem B 2014; 118:976-85. [DOI: 10.1021/jp411818j] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Deniz Tuna
- Department
of Chemistry, Technische Universität München, Lichtenbergstr.
4, 85747 Garching, Germany
| | - Andrzej L. Sobolewski
- Institute
of Physics, Polish Academy of Sciences, Al. Lotników 32/46, 02668 Warsaw, Poland
| | - Wolfgang Domcke
- Department
of Chemistry, Technische Universität München, Lichtenbergstr.
4, 85747 Garching, Germany
| |
Collapse
|
41
|
Wolf TJA, Kuhlman TS, Schalk O, Martínez TJ, Møller KB, Stolow A, Unterreiner AN. Hexamethylcyclopentadiene: time-resolved photoelectron spectroscopy and ab initio multiple spawning simulations. Phys Chem Chem Phys 2014; 16:11770-9. [DOI: 10.1039/c4cp00977k] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Time-resolved photoelectron spectroscopy and ab initio multiple spawning dynamical simulations of hexamethylcyclopentadiene reveal wavepacket evolution in a distinct degree of freedom.
Collapse
Affiliation(s)
- T. J. A. Wolf
- Institut für Physikalische Chemie and Center for Functional Nanostructures (CFN)
- Karlsruhe Institute of Technology (KIT)
- 76131 Karlsruhe, Germany
- Stanford PULSE Institute
- Menlo Park, USA
| | - T. S. Kuhlman
- Department of Chemistry
- Technical University of Denmark
- DK-2800 Kgs. Lyngby, Denmark
| | - O. Schalk
- Stockholm University
- AlbaNova University Center
- , Sweden
- National Research Council
- , Canada
| | - T. J. Martínez
- Stanford PULSE Institute
- Menlo Park, USA
- Department of Chemistry
- Stanford University
- Stanford, USA
| | - K. B. Møller
- Department of Chemistry
- Technical University of Denmark
- DK-2800 Kgs. Lyngby, Denmark
| | - A. Stolow
- National Research Council
- , Canada
- Department of Chemistry
- University of Ottawa
- Canada
| | - A.-N. Unterreiner
- Institut für Physikalische Chemie and Center for Functional Nanostructures (CFN)
- Karlsruhe Institute of Technology (KIT)
- 76131 Karlsruhe, Germany
| |
Collapse
|
42
|
Barbatti M, Crespo-Otero R. Surface Hopping Dynamics with DFT Excited States. DENSITY-FUNCTIONAL METHODS FOR EXCITED STATES 2014; 368:415-44. [DOI: 10.1007/128_2014_605] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
|