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Liang Y, Fábri C, Su J, Billinghurst B, Zhao J, Chen Z, Liu B. Pure rotational and rovibrational spectroscopy of cyclopropylamine in the far-infrared region: -NH2 torsion. J Chem Phys 2024; 161:094303. [PMID: 39230377 DOI: 10.1063/5.0228249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2024] [Accepted: 08/16/2024] [Indexed: 09/05/2024] Open
Abstract
The pure rotational and rovibrational spectra of the ν27 -NH2 torsion of cyclopropylamine (CPA) in the far-infrared region were measured with a high-resolution Fourier transform infrared coupled to a synchrotron. The complex spectra reflect the presence of both trans and gauche conformers. Analysis of the pure rotational spectra (34-64 cm-1) yielded accurate rotational and centrifugal distortion constants of the ground and first two torsional excited states of trans-CPA. The fundamental, hot bands and weak overtones were identified and assigned in the 200-550 cm-1 range. Global analysis of over 19 000 transitions provides accurate energy levels of the torsional polyads up to vT = 3. The torsional levels and their rotational constants were in agreement with the theoretical results from quasiadiabatic channel reaction path Hamiltonian (RPH) calculations, emphasizing the need for molecular-specific theoretical treatments for large amplitude motions. Tunneling components of the torsional fundamental of gauche-CPA were assigned based on the RPH results and symmetry considerations, differing from previous experimental and theoretical work. This comprehensive spectroscopic characterization of CPA is crucial for its potential detection in the interstellar medium as a precursor to complex prebiotic molecules, providing essential data for future astronomical searches and advancing our understanding of nitrogen-containing organic molecules in space.
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Affiliation(s)
- Yue Liang
- College of Chemistry and Chemical Engineering, Lanzhou University, 222 South Tianshui Rd., Lanzhou 730000, China
| | - Csaba Fábri
- HUN-REN-ELTE Complex Chemical Systems Research Group, P.O. Box 32, H-1518 Budapest 112, Hungary
| | - Junjie Su
- College of Chemistry and Chemical Engineering, Lanzhou University, 222 South Tianshui Rd., Lanzhou 730000, China
| | - Brant Billinghurst
- Canadian Light Source Far-Infrared Beamline, 44 Innovation Blvd., Saskatoon, Saskatchewan S7N 2V3, Canada
| | - Jianbao Zhao
- Canadian Light Source Far-Infrared Beamline, 44 Innovation Blvd., Saskatoon, Saskatchewan S7N 2V3, Canada
| | - Ziqiu Chen
- College of Chemistry and Chemical Engineering, Lanzhou University, 222 South Tianshui Rd., Lanzhou 730000, China
| | - Bowen Liu
- College of Chemistry and Chemical Engineering, Lanzhou University, 222 South Tianshui Rd., Lanzhou 730000, China
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Quack M, Seyfang G, Wichmann G. Perspectives on parity violation in chiral molecules: theory, spectroscopic experiment and biomolecular homochirality. Chem Sci 2022; 13:10598-10643. [PMID: 36320700 PMCID: PMC9491092 DOI: 10.1039/d2sc01323a] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2022] [Accepted: 06/26/2022] [Indexed: 11/21/2022] Open
Abstract
The reflection (or ‘mirror’) symmetry of space is among the fundamental symmetries of physics. It is connected to the conservation law for the quantum number parity and a fundamental ‘non-observable’ property of space (as defined by an absolute ‘left-handed’ or ‘right-handed’ coordinate system). The discovery of the violation of this symmetry – the non-conservation of parity or ‘parity violation’ – in 1956/1957 had an important influence on the further development of physics. In chemistry the mirror symmetry of space is connected to the existence of enantiomers as isomers of chiral (‘handed’) molecules. These isomers would relate to each other as idealized left or right hand or as image and mirror image and would be energetically exactly equivalent with perfect space inversion symmetry. Parity violation results in an extremely small ‘parity violating’ energy difference between the ground states of the enantiomers which can be theoretically calculated to be about 100 aeV to 1 feV (equivalent to 10−11 to 10−10 J mol−1), depending on the molecule, but which has not yet been detected experimentally. Its detection remains one of the great challenges of current physical–chemical stereochemistry, with implications also for fundamental problems in physics. In biochemistry and molecular biology one finds a related fundamental question unanswered for more than 100 years: the evolution of ‘homochirality’, which is the practically exclusive preference of one chiral, enantiomeric form as building blocks in the biopolymers of all known forms of life (the l-amino acids in proteins and d-sugars in DNA, not the reverse d-amino acids or l-sugars). In astrobiology the spectroscopic detection of homochirality could be used as strong evidence for the existence of extraterrestrial life, if any. After a brief conceptual and historical introduction we review the development, current status, and progress along these three lines of research: theory, spectroscopic experiment and the outlook towards an understanding of the evolution of biomolecular homochirality. The reflection (or ‘mirror’) symmetry of space is among the fundamental symmetries of physics. It is connected to the conservation law for the quantum number purity and its violation and has a fundamental relation to stereochemistry and molecular chirality.![]()
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Affiliation(s)
- Martin Quack
- Physical Chemistry, ETH Zürich, CH-8093 Zurich, Switzerland
| | - Georg Seyfang
- Physical Chemistry, ETH Zürich, CH-8093 Zurich, Switzerland
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Hydrogen Delocalization in an Asymmetric Biomolecule: The Curious Case of Alpha-Fenchol. MOLECULES (BASEL, SWITZERLAND) 2021; 27:molecules27010101. [PMID: 35011331 PMCID: PMC8746872 DOI: 10.3390/molecules27010101] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/10/2021] [Revised: 12/11/2021] [Accepted: 12/15/2021] [Indexed: 12/31/2022]
Abstract
Rotational microwave jet spectroscopy studies of the monoterpenol α-fenchol have so far failed to identify its second most stable torsional conformer, despite computational predictions that it is only very slightly higher in energy than the global minimum. Vibrational FTIR and Raman jet spectroscopy investigations reveal unusually complex OH and OD stretching spectra compared to other alcohols. Via modeling of the torsional states, observed spectral splittings are explained by delocalization of the hydroxy hydrogen atom through quantum tunneling between the two non-equivalent but accidentally near-degenerate conformers separated by a low and narrow barrier. The energy differences between the torsional states are determined to be only 16(1) and 7(1) cm-1hc for the protiated and deuterated alcohol, respectively, which further shrink to 9(1) and 3(1) cm-1hc upon OH or OD stretch excitation. Comparisons are made with the more strongly asymmetric monoterpenols borneol and isopinocampheol as well as with the symmetric, rapidly tunneling propargyl alcohol. In addition, the third-in contrast localized-torsional conformer and the most stable dimer are assigned for α-fenchol, as well as the two most stable dimers for propargyl alcohol.
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Liang Y, Zhang Y, Fábri C, Ma J, Zhao J, Billinghurst B, Chen Z. High-resolution FTIR spectroscopy of benzaldehyde in the far-infrared region: probing the rotational barrier. Phys Chem Chem Phys 2021; 23:8549-8556. [PMID: 33876017 DOI: 10.1039/d1cp00188d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A discrepancy between theoretical and experimental values of the rotational barrier in benzaldehyde has been observed, which was attributed to inaccurate experimental results in part. Here, we report results on the -CHO torsion of benzaldehyde (C6H5CHO) based on a high resolution spectroscopic investigation in the far-infrared range in an effort to remove the experimental ambiguity. The rotationally-resolved vibrational spectra were measured with an unapodized resolution of 0.00064 cm-1 using synchrotron-based Fourier transform infrared (FTIR) spectroscopy at the Canadian Light Source. The torsional fundamental νt = 109.415429(20) cm-1 was unambiguously assigned via rovibrational analysis, followed by the tentative assignment of the first (2νt-νt) and second (3νt- 2νt) hot bands at 107.58 cm-1 and 105.61 cm-1, respectively, by comparison of the observed Q branch structures at high resolution with simulation based on a previous microwave study. This assignment is different from any previous low resolution infrared studies in which the intensity patterns were misleading. The key result of the assignment of the first three transitions allowed the determination of the barrier to internal rotation of (hc)1533.6 cm-1 (4.38 kcal mol-1). When compared with calculated results from vibrational second-order perturbation theory (VPT2) and the quasiadiabatic channel reaction path Hamiltonian (RPH) approach, the experimental value is still too low and this suggests that the discrepancy between theory and experiment remains despite the best experimental efforts.
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Affiliation(s)
- Yue Liang
- College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, China.
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Jahr E, Laude G, Richardson JO. Instanton theory of tunneling in molecules with asymmetric isotopic substitutions. J Chem Phys 2020; 153:094101. [PMID: 32891112 DOI: 10.1063/5.0021831] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We consider quantum tunneling in asymmetric double-well systems for which the local minima in the two wells have the same energy, but the frequencies differ slightly. In a molecular context, this situation can arise if the symmetry is broken by isotopic substitutions. We derive a generalization of instanton theory for these asymmetric systems, leading to a semiclassical expression for the tunneling matrix element and hence the energy-level splitting. We benchmark the method using a set of one- and two-dimensional models, for which the results compare favorably with numerically exact quantum calculations. Using the ring-polymer instanton approach, we apply the method to compute the level splittings in various isotopomers of malonaldehyde in full dimensionality and analyze the relative contributions from the zero-point energy difference and tunneling effects.
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Affiliation(s)
- Elena Jahr
- Laboratory of Physical Chemistry, ETH Zürich, 8093 Zürich, Switzerland
| | - Gabriel Laude
- Laboratory of Physical Chemistry, ETH Zürich, 8093 Zürich, Switzerland
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Quack M, Seyfang G, Wichmann G. Fundamental and approximate symmetries, parity violation and tunneling in chiral and achiral molecules. ADVANCES IN QUANTUM CHEMISTRY 2020. [DOI: 10.1016/bs.aiq.2020.06.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Császár AG, Fábri C, Sarka J. Quasistructural molecules. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2019. [DOI: 10.1002/wcms.1432] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Attila G. Császár
- Laboratory of Molecular Structure and Dynamics, Institute of Chemistry ELTE Eötvös Loránd University Budapest Hungary
- MTA‐ELTE Complex Chemical Systems Research Group Budapest Hungary
| | - Csaba Fábri
- Laboratory of Molecular Structure and Dynamics, Institute of Chemistry ELTE Eötvös Loránd University Budapest Hungary
- MTA‐ELTE Complex Chemical Systems Research Group Budapest Hungary
| | - János Sarka
- Department of Chemistry and Biochemistry Texas Tech University Lubbock Texas USA
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Albert S, Chen Z, Keppler K, Lerch P, Quack M, Schurig V, Trapp O. The Gigahertz and Terahertz spectrum of monodeutero-oxirane (c-C 2H 3DO). Phys Chem Chem Phys 2019; 21:3669-3675. [PMID: 30444517 DOI: 10.1039/c8cp05311a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The rotational spectrum of monodeutero-oxirane was analysed as measured using the Zurich Gigahertz (GHz) spectrometer and our highest resolution Fourier Transform Infrared (FTIR) spectrometer system coupled to synchrotron radiation at the Swiss Light Source (SLS). 112 distinct line frequencies have been newly assigned in the GHz range (extended to 120 GHz, compared to previous work extending to only 59 GHz) including rotational states up to J = 23. We have furthermore assigned 398 lines in the far infrared or Terahertz range (0.75-2.10 THz or 25-70 cm-1) including transitions with rotational quantum numbers up to J = 59. The results are discussed in relation to the possible first astrophysical observation of an isotopically chiral molecule and in relation to molecular parity violation.
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Affiliation(s)
- Sieghard Albert
- Physical Chemistry, ETH Zürich, CH-8093 Zürich, Switzerland.
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Šmydke J, Fábri C, Sarka J, Császár AG. Rovibrational quantum dynamics of the vinyl radical and its deuterated isotopologues. Phys Chem Chem Phys 2019; 21:3453-3472. [DOI: 10.1039/c8cp04672g] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Rotational–vibrational states up to 3200 cm−1, beyond the highest-lying stretching fundamental, are computed variationally for the vinyl radical (VR), H2CβCαH, and the following deuterated isotopologues of VR: CH2CD, CHDCH, and CD2CD.
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Affiliation(s)
- Jan Šmydke
- MTA-ELTE Complex Chemical Systems Research Group and Laboratory of Molecular Structure and Dynamics
- Institute of Chemistry
- ELTE Eötvös Loránd University
- H-1117 Budapest
- Hungary
| | - Csaba Fábri
- MTA-ELTE Complex Chemical Systems Research Group and Laboratory of Molecular Structure and Dynamics
- Institute of Chemistry
- ELTE Eötvös Loránd University
- H-1117 Budapest
- Hungary
| | - János Sarka
- Department of Chemistry and Biochemistry
- Texas Tech University
- Lubbock
- USA
| | - Attila G. Császár
- MTA-ELTE Complex Chemical Systems Research Group and Laboratory of Molecular Structure and Dynamics
- Institute of Chemistry
- ELTE Eötvös Loránd University
- H-1117 Budapest
- Hungary
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Fábri C, Albert S, Chen Z, Prentner R, Quack M. A molecular quantum switch based on tunneling in meta-d-phenol C6H4DOH. Phys Chem Chem Phys 2018; 20:7387-7394. [DOI: 10.1039/c8cp00133b] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The concept of a molecular quantum switch is introduced from realistic, quantitative wavepacket analyses of tunneling switching in m-d-phenol.
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Affiliation(s)
- Csaba Fábri
- Laboratory of Molecular Structure and Dynamics
- Institute of Chemistry
- Eötvös University
- H-1117 Budapest
- Hungary
| | | | - Ziqiu Chen
- Physical Chemistry
- ETH Zürich
- CH-8093 Zürich
- Switzerland
| | | | - Martin Quack
- Physical Chemistry
- ETH Zürich
- CH-8093 Zürich
- Switzerland
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