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Uribe L, Di Grande S, Crisci L, Lazzari F, Mendolicchio M, Barone V. Accurate Structures and Rotational Constants of Steroid Hormones at DFT Cost: Androsterone, Testosterone, Estrone, β-Estradiol, and Estriol. J Phys Chem A 2024; 128:2629-2642. [PMID: 38530336 DOI: 10.1021/acs.jpca.4c00573] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/27/2024]
Abstract
A comprehensive analysis of the structural, conformational, and spectroscopic properties in the gas phase has been performed for five prototypical steroid hormones, namely, androsterone, testosterone, estrone, β-estradiol, and estriol. The revDSD-PBEP86 double-hybrid functional in conjunction with the D3BJ empirical dispersion and a suitable triple-ζ basis set provides accurate conformational energies and equilibrium molecular structures, with the latter being further improved by proper account of core-valence correlation. Average deviations within 0.1% between computed and experimental ground state rotational constants are reached when adding to those equilibrium values vibrational corrections obtained at the cost of standard harmonic frequencies thanks to the use of a new computational tool. Together with the intrinsic interest of the studied hormones, the accuracy of the results obtained at DFT cost for molecules containing about 50 atoms paves the way toward the accurate investigations of other flexible bricks of life.
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Affiliation(s)
- Lina Uribe
- Scuola Normale Superiore di Pisa, Piazza dei Cavalieri 7, 56126 Pisa, Italy
- Scuola Superiore Meridionale, Largo San Marcellino 10, 80138 Napoli, Italy
| | - Silvia Di Grande
- Scuola Normale Superiore di Pisa, Piazza dei Cavalieri 7, 56126 Pisa, Italy
- Scuola Superiore Meridionale, Largo San Marcellino 10, 80138 Napoli, Italy
| | - Luigi Crisci
- Scuola Normale Superiore di Pisa, Piazza dei Cavalieri 7, 56126 Pisa, Italy
| | - Federico Lazzari
- Scuola Normale Superiore di Pisa, Piazza dei Cavalieri 7, 56126 Pisa, Italy
| | - Marco Mendolicchio
- Scuola Normale Superiore di Pisa, Piazza dei Cavalieri 7, 56126 Pisa, Italy
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De Vos J, Schröder B, Rauhut G. Comprehensive quantum chemical analysis of the (ro)vibrational spectrum of thiirane and its deuterated isotopologue. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 302:123083. [PMID: 37423098 DOI: 10.1016/j.saa.2023.123083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Revised: 06/23/2023] [Accepted: 06/26/2023] [Indexed: 07/11/2023]
Abstract
The (ro)vibrational spectra of thiirane, c-C2H4S, and its fully deuterated isotopologue, c-C2D4S, have been studied by means of vibrational configuration interaction theory, VCI, its incremental variant, iVCI, and subsequent variational rovibrational calculations, RVCI, which rely on multidimensional potential energy surfaces of coupled-cluster quality including up to four-mode coupling terms. Accurate geometrical parameters, fundamental vibrational transitions and first overtones, rovibrational spectra and rotational spectroscopic constants have been determined from these calculations and were compared with experimental results whenever available. A number of tentative misassignments in the vibrational spectra could be resolved and most results for the deuterated thiirane are high-level predictions, which may guide experiments to come. Besides this, a new implementation of infrared intensities within the iVCI framework has been tested for the transitions of the title compounds and are compared with results obtained from standard VCI calculations.
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Affiliation(s)
- John De Vos
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569, Stuttgart, Germany; Department of Chemistry, Ghent University, Krijgslaan 281, 9000, Ghent, Belgium.
| | - Benjamin Schröder
- Institute for Physical Chemistry, University of Göttingen, Tammannstr. 6, 37077, Göttingen, Germany.
| | - Guntram Rauhut
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569, Stuttgart, Germany.
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Chang X, Dobrolyubov EO, Krasnoshchekov SV. Vibrational resonance analysis of linear molecules using resummation of divergent Rayleigh-Schrödinger perturbation theory series. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 288:122071. [PMID: 36455465 DOI: 10.1016/j.saa.2022.122071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Revised: 10/10/2022] [Accepted: 10/30/2022] [Indexed: 06/17/2023]
Abstract
The large order Rayleigh-Schrödinger perturbation theory (RSPT) was applied for calculating vibrational states of linear molecules. Two molecules (CO2 and C2H2) were used as test cases with using of isomorphic Watson Hamiltonian and quartic force fields. For CO2 the Sayvetz condition can remove all degeneracies for purely vibrational states and the non-degenerate perturbation theory can be applied. However, an existence of two degenerate modes in C2H2 requires using the upgraded degenerate version of RSPT that was employed in this context for the first time. The dominating divergent behavior of such series requires the resummation technique that mimics the multivalued nature of the underlying solutions, and the applied quartic Padé-Hermite approximants (QPHA) provided full solution of the problem. Moreover, some mathematical properties of QPHA proved to be an efficient tool for studying resonance effects through the Katz theorem that controls the singular points of the eigenvalues on the complex plane. In the case of C2H2, not only all earlier observed classical resonances were confirmed and quantified, but also subtle interpolyad resonances (K2/55,K3/4555), proposed recently by Herman (2011) were described as well. Following the analysis, we found several novel resonances, of which we proposed one independent interpolyad resonance K2/4444. The complete analysis of such critical points provided the full resonance picture of all studied molecules.
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Affiliation(s)
- Xuanhao Chang
- Chemistry Department, Lomonosov Moscow State University, Leninskiye Gory 1-3, Moscow, 119899, Russian Federation
| | - Egor O Dobrolyubov
- Chemistry Department, Lomonosov Moscow State University, Leninskiye Gory 1-3, Moscow, 119899, Russian Federation; Emanuel Institute of Biochemical Physics of the Russian Academy of Sciences, Kosygina ul., 4, Moscow, 119334, Russian Federation
| | - Sergey V Krasnoshchekov
- Chemistry Department, Lomonosov Moscow State University, Leninskiye Gory 1-3, Moscow, 119899, Russian Federation.
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Kreienborg NM, Yang Q, Pollok CH, Bloino J, Merten C. Matrix-isolation and cryosolution-VCD spectra of α-pinene as benchmark for anharmonic vibrational spectra calculations. Phys Chem Chem Phys 2023; 25:3343-3353. [PMID: 36633064 DOI: 10.1039/d2cp04782a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
The inclusion of anharmonicity in vibrational spectral analyis remains associated to small molecular systems with up to a dozen of atoms, with half a dozen of non-hydrogen atoms, typically thesize of propylene oxide. One may see two reasons for this: first of all, larger systems are often thought to be computationally too demanding (high computational costs) for a full anharmonic vibrational analysis. Second, the identification of resonances and their correction is often considered something only expert theoreticians could address because of the lack of unequivocal criteria. In this contribution, we illustrate that resonances can indeed become a complex problem, which can be handled almost transparently thanks to recent advances in vibrational perturbation theory (VPT2). The study also emphasizes the importance and the central role played by experiment in benchmarking novel theoretical approaches. In fact, we herein provide the currently highest resolution VCD spectra available for α- and β-pinene obtained under matrix-isolation conditions and in liquid Xenon as solvent. They are interpreted by VPT2 with novel tests for the identification of resonances. Hence, the study demonstrates the mutual stimulation of advances in both experimental techniques and computational models.
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Affiliation(s)
- Nora M Kreienborg
- Ruhr-Universität Bochum, Fakultät für Chemie und Biochemie, Organische Chemie II, Universitätsstraße 150, 44801 Bochum, Germany.
| | - Qin Yang
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy.
| | - Corina H Pollok
- Ruhr-Universität Bochum, Fakultät für Chemie und Biochemie, Organische Chemie II, Universitätsstraße 150, 44801 Bochum, Germany.
| | - Julien Bloino
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy.
| | - Christian Merten
- Ruhr-Universität Bochum, Fakultät für Chemie und Biochemie, Organische Chemie II, Universitätsstraße 150, 44801 Bochum, Germany.
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Yang Q, Bloino J. An Effective and Automated Processing of Resonances in Vibrational Perturbation Theory Applied to Spectroscopy. J Phys Chem A 2022; 126:9276-9302. [DOI: 10.1021/acs.jpca.2c06460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
Affiliation(s)
- Qin Yang
- Faculty of Science, Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126Pisa, Italy
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, 16610Prague, Czech Republic
| | - Julien Bloino
- Faculty of Science, Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126Pisa, Italy
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Schröder B, Rauhut G. Comparison of body definitions for incremental vibrational configuration interaction theory (iVCI). J Chem Phys 2022; 156:174103. [DOI: 10.1063/5.0085082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Within incremental vibrational configuration interaction theory (iVCI), the vibrational state energy is determined by means of a many-body expansion, i.e., it is a sum of terms of increasing order, which allow for an embarrassingly parallel evaluation. The convergence of this expansion depends strongly on the definition of the underlying bodies, which essentially decompose the correlation space into fragments. The different definitions considered here comprise mode-based bodies, excitation level-based bodies, and energy-based bodies. An analysis of the convergence behavior revealed that accounting for resonances within these definitions is mandatory and leads to a substantial improvement of the convergence, that is, the expansions can be truncated at lower orders. Benchmark calculations and systematic comparisons of the different body definitions for a small set of molecules, i.e., ketene, ethene, and diborane, have been conducted to study the overall performance of these iVCI implementations with respect to accuracy and central processing unit time.
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Affiliation(s)
- Benjamin Schröder
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
| | - Guntram Rauhut
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
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Chang X, Dobrolyubov EO, Krasnoshchekov SV. Fundamental studies of vibrational resonance phenomena by multivalued resummation of the divergent Rayleigh-Schrödinger perturbation theory series: deciphering polyad structures of three H 216O isotopologues. Phys Chem Chem Phys 2022; 24:6655-6675. [PMID: 35234755 DOI: 10.1039/d1cp04279c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
A fundamental quantitative study of the vibrational resonances of three H216O H,D-isotopologues with a quartic Watson Hamiltonian was carried out using the resummation of the high-order (∼λn, n ≤ 203) divergent Rayleigh-Schrödinger perturbation theory (RSPT) series by quartic Padé-Hermite multivalued diagonal approximants PH[m,m,m,m,m], m ≤ 40. The resonance condition between a pair of states is formulated as the existence of a common complex energy solution branch point inside the unit circle: |E(λj)|, Re(λj)2 + Im(λj)2 ≤ 1. For the matrix formulation of the vibrational problem (VCI), the existence of common branch points is governed by the Katz theorem and they can be found as roots of discriminant polynomials. The main branches of the Padé-Hermite approximants typically reproduce VCI energies with high accuracy while alternative branches often fit nearby resonant states. The resummation of the RSPT series for H2O and D2O (up to the tenth polyad) revealed not only Fermi and Darling-Dennison resonances, but also unusual (0,2,-5) and (5,-2,0) resonance effects matching the (5,2,5) polyad structure, while the (3,2,1) structure was rigorously confirmed for HDO. It is demonstrated that the (5,2,5) polyad structure ensures good organization of high-energy resonating states and breaks down the classic (2,1,2) structure. The advocated methodology of quantitative description of resonance phenomena and revealing polyad structures is suitable for larger molecules and can be adapted to linear molecules and symmetric tops. Its application ensures rigorous classification of vibrational states and can be used in quantitative vibration-rotation spectroscopy.
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Affiliation(s)
- Xuanhao Chang
- Chemistry Department, Lomonosov Moscow State University, Leninskiye Gory 1-3, Moscow, 119899, Russian Federation.
| | - Egor O Dobrolyubov
- Chemistry Department, Lomonosov Moscow State University, Leninskiye Gory 1-3, Moscow, 119899, Russian Federation.
| | - Sergey V Krasnoshchekov
- Chemistry Department, Lomonosov Moscow State University, Leninskiye Gory 1-3, Moscow, 119899, Russian Federation.
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