Recent Developments in the Synthesis of Dipyrromethanes. A Review

Dinuclear Cobalt(II) Bis-Dipyrromethane Complexes: Synthesis via Divergent Transmetalation Reactions

A bis-dipyrromethane ligand, 4,4'-bis(1,1-bis(3,5-dimethyl-1H-pyrrol-2-yl)ethyl)-1,1'-biphenyl, [H4-MeBDPM-BPh] (1), is synthesized via acid-catalyzed electrophilic aromatic substitution of 2,4-dimethylpyrrole with 4,4'-diacetylbiphenyl. Subsequent deprotonation of 1 with n-BuLi yields the corresponding Li-salt [Li4-MeBDPM-BPh] (2). Transmetalation involving 2 and either CoCl2 or [Co(HMDS)2] (HMDS = -N(Si(CH3)3)2) results in dinuclear Co(II) complexes. In the case of CoCl2, the formation of the ate-complex 2[Li(THF)4][(MeBDPM-BPh){Co(μ-Cl)2Li(THF)2}2] (3) is observed where each metal center occupies a tetrahedral geometry with noninteracting metal centers. However, when utilizing [Co(HMDS)2], the dinuclear complex 2[Li(THF)4][(MeBDPM-BPh){Co(HMDS)}2] (4) is obtained with the formation of LiHMDS as the product of elimination. The Co metal centers of complex 4 are both three-coordinate and trigonal planar. Displacement of LiHMDS from 4 readily occurs upon treatment with the ylide base, H2CPPh3, yielding the neutral complex [(MeBDPM-BPh){Co(H2CPPh3)2}2] (5). At room temperature, complexes 3-5 have magnetically noninteracting metal centers with S = 3/2 spin states.

Self-Assembly of 4,4'-Linked Dipyrromethanes from Unconventional Reactants─Propargylamines, 2-(Vinyloxy)ethyl Isothiocyanate, and Alkylating Agents under Basic Conditions

Self-assembly of 4,4'-linked dipyrromethanes from 2-(vinyloxy)ethyl isothiocyanate, tertiary propargylamines, and alkylating agents has been discovered. The plausible reaction mechanism, the major stages of which have been confirmed experimentally, includes (1) the lithiation of propargylamine (with n-BuLi); (2) the formation of lithium N-[2-(vinyloxy)ethyl]but-2-ynimidothioate (product of the addition of monolithiated propargylamine to isothiocyanate); (3) isomerization of the latter in the corresponding allenylimidothioate (under the action of the t-BuOK/t-BuOH system); (4) low-temperature (<15 °C) intramolecular cyclization of the latter into potassium N-(5-amino-2-thienyl)-N-[2-(vinyloxy)ethyl]amide; (5) the base-induced cleavage of the C-O bond of the N-[2-(vinyloxy)ethyl] group and removal of vinyloxide-anion leading to acetaldehyde; (6) interaction of acetaldehyde with two molecules of N-(5-amino-2-thienyl)-N-[2-(vinyloxy)ethyl]amide-anion resulting in dithienomethane N-anionic intermediate; (7) recyclization of the latter into dipyrromethane S-anionic intermediate. Final S-alkylation affords synthetically challenging 4,4'-dipyrromethanes in a yield of 22-51%. The whole process is carried out in a single synthetic operation in a very short time (∼10-15 min, excluding alkylation time).

Simple Dipyrrin Analogues of Prodigiosin for Use as Colistin Adjuvants

Multidrug resistant (MDR) bacteria are an increasing public health problem. One promising alternative to the development of new antibiotics is the use of antibiotic adjuvants, which would allow the continued use of FDA-approved antibiotics that have been rendered ineffective due to resistance. Herein, we report a series of dipyrrins and pyrrole derivatives designed as analogues of prodigiosin and obatoclax, several of which potentiate the activity of colistin against Klebsiella pneumoniae, with lead compounds also potentiating colistin against Acinetobacter baumannii and Pseudomonas aeruginosa.

Solid-phase fluorescent BODIPY-peptide synthesis via in situ dipyrrin construction

Traditional fluorescent peptide chemical syntheses hinge on the use of limited fluorescent/dye-taggable unnatural amino acids and entail multiple costly purifications. Here we describe a facile and efficient protocol for in situ construction of dipyrrins on the N-terminus with 20 natural and five unnatural amino acids and the lysine's side chain of selected peptides/peptide drugs through Fmoc-based solid-phase peptide synthesis. The new strategy enables the direct formation of boron-dipyrromethene (BODIPY)-peptide conjugates from simple aldehyde and pyrrole derivatives without pre-functionalization, and only requires a single-time chromatographic purification at the final stage. As a model study, synthesized EBNA1-targeting BODIPY1-Pep4 demonstrates intact selectivity in vitro, responsive fluorescence enhancement, and higher light cytotoxicity due to the photo-generation of cytotoxic singlet oxygen. This work offers a novel practical synthetic platform for fluorescent peptides for multifaceted biomedical applications.

Temperature- and Structure-Dependent Optical Properties and Photophysics of BODIPY Dyes

We report on the temperature- and structural-dependent optical properties and photophysics of a set of boron dipyrromethene (BODIPY) dyes with different substitution patterns of their meso-aryl subunit. Single-crystal X-ray diffraction analysis of the compounds enabled a classification of the dyes into a sterically hindered and a unhindered group. The steric hindrance refers to a blocked rotational motion of the aryl subunit around the bond connecting this moiety to the meso-position of the BODIPY core. The energy barriers related to this rotation were simulated by DFT calculations. As follows from the relatively low rotational barrier calculated to about 17 kcal/mol, a free rotation is only possible for sterically unhindered compounds. Rotational barriers of more than 40 kcal/mol determined for the sterically hindered compounds suggest an effective freezing of the rotational motion in these molecules. With the aid of temperature-dependent spectroscopic measurements, we could show that the ability to rotate directly affects the optical properties of our set of BODIPY dyes. This accounts for the strong temperature dependence of the fluorescence of the sterically unhindered compounds which show a drastic decrease in fluorescence quantum yield and a significant shortening in fluorescence lifetime upon heating. The optical properties of the sterically hindered compounds, however, are barely affected by temperature. Our results suggest a nonradiative deactivation of the first excited singlet state of the sterically unhindered compounds caused by a conical intersection of the potential energy surfaces of the ground and first excited state which is accessible by rotation of the meso-subunit. This is in good agreement with previously reported deactivation mechanisms. In addition, our results suggest the presence of a second nonradiative depopulation pathway of the first excited singlet state which is particularly relevant for the sterically hindered compounds.

Use of the Nascent Isocyclic Ring to Anchor Assembly of the Full Skeleton of Model Chlorophylls

The chlorophyll skeleton contains a chlorin macrocycle and an annulated fifth (or isocyclic) ring bearing 13¹-oxo and 13²-carbomethoxy substituents. The isocyclic ring has traditionally been constructed by annulation of an intact tetrapyrrole macrocycle. Here, a complementary route employs reaction of a gem-dimethyl-substituted dihydrodipyrrin-carboxaldehyde (AD half) and a dipyrromethane bearing a 3-methoxy-1,3-dioxopropyl group (BC half). A McMurry-like reaction of a 2-(2-nitro-5-oxohexyl)pyrrole was employed to construct the second pyrrole ring in one of three BC halves, whereas the other two were prepared by known routes. An AD half and a BC half were joined by Knoevenagel condensation at room temperature, affording the AD,BC-substituted 2-methoxycarbonyl-2-propenone. The subsequent reaction of three AD, BC-propenones (mixture of Z,E-isomers) in CH₃CN containing InCl₃ and In(OTf)₃ at 80 °C afforded the chlorophyll skeleton as the chloroindium(III) chelate; the reaction proceeds via Nazarov cyclization (to form the isocyclic ring), S_EAr (to construct the macrocycle), and 2e^-,2H⁺ oxidation (to give the aromatic chromophore). The absorption spectra of the complexes closely resemble that of chlorophyll a. The present work exploits the nascent isocyclic ring as an anchor for directed assembly of the AD and BC halves, forming both the chlorin macrocycle and the isocyclic ring in a single-flask transformation.

Current Advances in the Synthesis of Valuable Dipyrromethane Scaffolds: Classic and New Methods

This review presents the most recent developments on the synthesis of dipyrromethanes, covering classical synthetic strategies, using acid catalyzed condensation of pyrroles and aldehydes or ketones, and recent breakthroughs which allow the synthesis of these type of heterocycles with new substitution patterns.

Selective synthesis of 5-aryl-10-(nitromethyl) substituted 15-azatripyrrane, 15-oxatripyrrane and 15-thiatripyrrane: access to nitromethyl functionalized A3B-porphyrins

A chemical strategy toward the selective synthesis of unsymmetrical tripyrranes was developed for the building of meso-aryl and -nitromethyl substituted A₃B porphyrins.

Heck functionalization of an asymmetric aza-BODIPY core: synthesis of far-red infrared probes for bioimaging applications

Heck functionalization of azadipyrromethenes (aza-DIPY) allows the introduction of suitable functional groups to convert aza-BODIPY in bioconjugate complexes.

Nucleophilic Aromatic Substitution on Pentafluorophenyl-Substituted Dipyrranes and Tetrapyrroles as a Route to Multifunctionalized Chromophores for Potential Application in Photodynamic Therapy

The application of porphyrinoids in biomedical fields, such as photodynamic therapy (PDT), requires the introduction of functional groups to tune their solubility for the biological environment and to allow a coupling to other active moieties or carrier systems. A valuable motif in this regard is the pentafluorophenyl (PFP) substituent, which can easily undergo a regiospecific nucleophilic replacement (S_N Ar) of its para-fluorine atom by a number of nucleophiles. Here, it is shown that, instead of amino-substitution on the final porphyrinoid or BODIPY (boron dipyrromethene), the precursor 5-(PFP)-dipyrrane can be modified with amines (or alcohols). These dipyrranes were transformed into amino-substituted BODIPYs. Condensation of these dipyrranes with aldehydes gave access to trans-A₂ B₂ -porphyrins and trans-A₂ B-corroles. By using pentafluorobenzaldehyde, it was possible to introduce another para-fluorine atom, which enabled the synthesis of multifunctionalized tetrapyrroles. Furthermore, alkoxy- and amino-substituted dipyrranes were applied to the synthesis of A₃ B₃ -hexaphyrins. The polar porphyrins that were prepared by using this method exhibited in vitro PDT activity against several tumor cell lines.

Sensing and discrimination of cyanide and hydrogen sulfide using an 8-alkenyl-4,4-difluoro-4-bora-3a,4a-diaza-s-indacene derivative

8-(2-Phenylethenyl)BODIPY has been shown to be an appropriate chromo-fluorogenic probe for cyanide in H₂O.

An easily accessible and recyclable copper nanoparticle catalyst for the solvent-free synthesis of dipyrromethanes and aromatic amines

A facile method to prepare a reusable copper nanocatalyst is reported.

Stereochemical Assignment of Strigolactone Analogues Confirms Their Selective Biological Activity

Strigolactones (SLs) are new plant hormones with various developmental functions. They are also soil signaling chemicals that are required for establishing beneficial mycorrhizal plant/fungus symbiosis. In addition, SLs play an essential role in inducing seed germination in root-parasitic weeds, which are one of the seven most serious biological threats to food security. There are around 20 natural SLs that are produced by plants in very low quantities. Therefore, most of the knowledge on SL signal transduction and associated molecular events is based on the application of synthetic analogues. Stereochemistry plays a crucial role in the structure-activity relationship of SLs, as compounds with an unnatural D-ring configuration may induce biological effects that are unrelated to SLs. We have synthesized a series of strigolactone analogues, whose absolute configuration has been elucidated and related with their biological activity, thus confirming the high specificity of the response. Analogues bearing the R-configured butenolide moiety showed enhanced biological activity, which highlights the importance of this stereochemical motif.