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Krasnokutski SA, Jäger C, Henning T, Geffroy C, Remaury QB, Poinot P. Formation of extraterrestrial peptides and their derivatives. SCIENCE ADVANCES 2024; 10:eadj7179. [PMID: 38630826 PMCID: PMC11023503 DOI: 10.1126/sciadv.adj7179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Accepted: 03/15/2024] [Indexed: 04/19/2024]
Abstract
The formation of protein precursors, due to the condensation of atomic carbon under the low-temperature conditions of the molecular phases of the interstellar medium, opens alternative pathways for the origin of life. We perform peptide synthesis under conditions prevailing in space and provide a comprehensive analytic characterization of its products. The application of 13C allowed us to confirm the suggested pathway of peptide formation that proceeds due to the polymerization of aminoketene molecules that are formed in the C + CO + NH3 reaction. Here, we address the question of how the efficiency of peptide production is modified by the presence of water molecules. We demonstrate that although water slightly reduces the efficiency of polymerization of aminoketene, it does not prevent the formation of peptides.
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Affiliation(s)
- Serge A. Krasnokutski
- Laboratory Astrophysics Group of the Max Planck Institute for Astronomy at the Friedrich Schiller University Jena, Helmholtzweg 3, D-07743 Jena, Germany
| | - Cornelia Jäger
- Laboratory Astrophysics Group of the Max Planck Institute for Astronomy at the Friedrich Schiller University Jena, Helmholtzweg 3, D-07743 Jena, Germany
| | | | - Claude Geffroy
- Institut de Chimie des Milieux et Materiaux de Poitiers, University of Poitiers, UMR CNRS 7285, France
| | - Quentin B. Remaury
- Institut de Chimie des Milieux et Materiaux de Poitiers, University of Poitiers, UMR CNRS 7285, France
| | - Pauline Poinot
- Institut de Chimie des Milieux et Materiaux de Poitiers, University of Poitiers, UMR CNRS 7285, France
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Metrano AJ, Chinn AJ, Shugrue CR, Stone EA, Kim B, Miller SJ. Asymmetric Catalysis Mediated by Synthetic Peptides, Version 2.0: Expansion of Scope and Mechanisms. Chem Rev 2020; 120:11479-11615. [PMID: 32969640 PMCID: PMC8006536 DOI: 10.1021/acs.chemrev.0c00523] [Citation(s) in RCA: 98] [Impact Index Per Article: 24.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
Low molecular weight synthetic peptides have been demonstrated to be effective catalysts for an increasingly wide array of asymmetric transformations. In many cases, these peptide-based catalysts have enabled novel multifunctional substrate activation modes and unprecedented selectivity manifolds. These features, along with their ease of preparation, modular and tunable structures, and often biomimetic attributes make peptides well-suited as chiral catalysts and of broad interest. Many examples of peptide-catalyzed asymmetric reactions have appeared in the literature since the last survey of this broad field in Chemical Reviews (Chem. Rev. 2007, 107, 5759-5812). The overarching goal of this new Review is to provide a comprehensive account of the numerous advances in the field. As a corollary to this goal, we survey the many different types of catalytic reactions, ranging from acylation to C-C bond formation, in which peptides have been successfully employed. In so doing, we devote significant discussion to the structural and mechanistic aspects of these reactions that are perhaps specific to peptide-based catalysts and their interactions with substrates and/or reagents.
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Affiliation(s)
- Anthony J. Metrano
- AstraZeneca Oncology R&D, 35 Gatehouse Dr., Waltham, MA 02451, United States
| | - Alex J. Chinn
- Department of Chemistry, Princeton University, Princeton, NJ 08544, United States
| | - Christopher R. Shugrue
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, United States
| | - Elizabeth A. Stone
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, CT 06520, United States
| | - Byoungmoo Kim
- Department of Chemistry, Clemson University, Clemson, SC 29634, United States
| | - Scott J. Miller
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, CT 06520, United States
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Petsi M, Zografos AL. 2,5-Diketopiperazine Catalysts as Activators of Dioxygen in Oxidative Processes. ACS Catal 2020. [DOI: 10.1021/acscatal.0c01847] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Marina Petsi
- Department of Chemistry, Main University Campus, Aristotle University of Thessaloniki, Thessaloniki 54124, Greece
| | - Alexandros L. Zografos
- Department of Chemistry, Main University Campus, Aristotle University of Thessaloniki, Thessaloniki 54124, Greece
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Farooq S, Ngaini Z. One Pot and Two Pot Synthetic Strategies and Biological Applications of Epoxy-Chalcones. CHEMISTRY AFRICA 2020. [DOI: 10.1007/s42250-020-00128-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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Bérubé C, Borgia A, Voyer N. Total synthesis of pseudacyclins A–E by an on-resin head-to-side chain concomitant cyclization-cleavage reaction. Tetrahedron Lett 2018. [DOI: 10.1016/j.tetlet.2018.10.025] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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Bérubé C, Borgia A, Voyer N. A novel route towards cycle-tail peptides using oxime resin: teaching an old dog a new trick. Org Biomol Chem 2018; 16:9117-9123. [DOI: 10.1039/c8ob01868e] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this paper, two anabaenopeptins cycle-tail peptides were synthesized via a novel acid-catalyzed head-to-side-chain concomitant cyclization/cleavage reaction on oxime resin.
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Affiliation(s)
- Christopher Bérubé
- Département de Chimie and PROTEO
- Université Laval
- Pavillon Alexandre-Vachon
- Faculté des sciences et de génie
- Québec
| | - Alexandre Borgia
- Département de Chimie and PROTEO
- Université Laval
- Pavillon Alexandre-Vachon
- Faculté des sciences et de génie
- Québec
| | - Normand Voyer
- Département de Chimie and PROTEO
- Université Laval
- Pavillon Alexandre-Vachon
- Faculté des sciences et de génie
- Québec
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Affiliation(s)
| | - Normand Voyer
- Département de chimie and PROTEO, Université Laval , Québec, Canada
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Ziganshin MA, Safiullina AS, Gerasimov AV, Ziganshina SA, Klimovitskii AE, Khayarov KR, Gorbatchuk VV. Thermally Induced Self-Assembly and Cyclization of l-Leucyl-l-Leucine in Solid State. J Phys Chem B 2017; 121:8603-8610. [PMID: 28820260 DOI: 10.1021/acs.jpcb.7b06759] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Thermal treatment of oligopeptides is one of the methods for synthesis of organic nanostructures. However, heating may lead not only to self-assembly of the initial molecules, but also to chemical reactions resulting in the formation of new unexpected nanostructures or change in the properties of the existing ones. In the present work, the reaction of cyclization of dipeptide l-leucyl-l-leucine in solid state under heating was studied. The change in morphology of dipeptide thin film and formation of nanostructures after heating was visualized using atomic force microscopy. This method also was used for demonstration of differences in self-assembly of linear and cyclic dipeptides. The chemical structure of reaction product was characterized by NMR spectrometry, FTIR spectroscopy and GC-MS analysis. Kinetic parameters of cyclization were estimated within the approaches of the nonisothermal kinetics ("model-free" kinetics and linear regression methods for detection of topochemical equation). The results of present work are useful for explanation the changes in the properties of nanostructures based on short-chain oligopeptides, notably leucyl-leucine, after thermal treatment, as well as for the synthesis of cyclic oligopeptides.
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Affiliation(s)
- Marat A Ziganshin
- A.M. Butlerov Institute of Chemistry, Kazan Federal University , Kremlevskaya ul. 18, Kazan, 420008 Russia
| | - Aisylu S Safiullina
- A.M. Butlerov Institute of Chemistry, Kazan Federal University , Kremlevskaya ul. 18, Kazan, 420008 Russia
| | - Alexander V Gerasimov
- A.M. Butlerov Institute of Chemistry, Kazan Federal University , Kremlevskaya ul. 18, Kazan, 420008 Russia
| | - Sufia A Ziganshina
- Kazan Zavoisky Physical-Technical Institute, Kazan Scientific Center, Russian Academy of Sciences , Sibirskii trakt 10/7, Kazan, 420029 Russia
| | - Alexander E Klimovitskii
- A.M. Butlerov Institute of Chemistry, Kazan Federal University , Kremlevskaya ul. 18, Kazan, 420008 Russia
| | - Khasan R Khayarov
- A.M. Butlerov Institute of Chemistry, Kazan Federal University , Kremlevskaya ul. 18, Kazan, 420008 Russia
| | - Valery V Gorbatchuk
- A.M. Butlerov Institute of Chemistry, Kazan Federal University , Kremlevskaya ul. 18, Kazan, 420008 Russia
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Bryliakov KP. Catalytic Asymmetric Oxygenations with the Environmentally Benign Oxidants H2O2 and O2. Chem Rev 2017; 117:11406-11459. [DOI: 10.1021/acs.chemrev.7b00167] [Citation(s) in RCA: 226] [Impact Index Per Article: 32.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Konstantin P. Bryliakov
- Novosibirsk State University, Pirogova 2, Novosibirsk 630090, Russian Federation
- Boreskov Institute of Catalysis, Pr. Lavrentieva 5, Novosibirsk 630090, Russian Federation
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Bérubé C, Barbeau X, Cardinal S, Boudreault PL, Bouchard C, Delcey N, Lagüe P, Voyer N. Interfacial supramolecular biomimetic epoxidation catalysed by cyclic dipeptides. Supramol Chem 2016. [DOI: 10.1080/10610278.2016.1236197] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
| | - Xavier Barbeau
- Département de Biochimie, Microbiologie et Bioinformatique and PROTÉO, Université Laval, Québec, Canada
| | | | | | - Corinne Bouchard
- Département de Chimie and PROTEO, Université Laval, Québec, Canada
| | - Nicolas Delcey
- Département de Chimie and PROTEO, Université Laval, Québec, Canada
| | - Patrick Lagüe
- Département de Biochimie, Microbiologie et Bioinformatique and PROTÉO, Université Laval, Québec, Canada
| | - Normand Voyer
- Département de Chimie and PROTEO, Université Laval, Québec, Canada
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