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Yuriy K, Kusdemir G, Volodymyr P, Tüzün B, Taslimi P, Karatas OF, Anastasia K, Maryna P, Sayın K. A biochemistry-oriented drug design: synthesis, anticancer activity, enzymes inhibition, molecular docking studies of novel 1,2,4-triazole derivatives. J Biomol Struct Dyn 2024; 42:1220-1236. [PMID: 37671856 DOI: 10.1080/07391102.2023.2253906] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Accepted: 03/28/2023] [Indexed: 09/07/2023]
Abstract
In this study, we researched the reactions of 5-(5-bromofuran-2-yl)-4-methyl-1,2,4-triazole-3-thiol and 5-thiophene-(3-ylmethyl)-4R-1,2,4-triazole-3-thiols with some halogen-containing compounds, a number of new compounds were synthesized (1.1-1.5 and 2.1-2.8). These compounds showed excellent to good inhibitory activities on acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) enzymes. For obtaining the effects of these compounds on AChE and BChE enzymes were determined spectrophotometrically according to Ellman. IC50 values of these enzymes were ranging between 1.63 and 17.68 nM for AChE and 8.71 and 84.02 nM for BChE. After, prostate cancer is the second leading cause of cancer-related mortality for men over the age of 65 in developed countries. Current treatment options remain limited in the treatment of advanced-stage prostate cancer leading to biochemical recurrence in almost 40% of the patients. Therefore, there is an urgent need for development of novel therapeutic tools for treatment of prostate cancer patients. In this study, we aimed at analyzing the potential of all compounds against prostate cancer cells. We found that, of the tested compounds, 2.1, 2.2 and 2.3 showed significant cytotoxic activities against PC3 prostate cancer cells, although their effect on the viability of normal prostate cells was limited. These findings suggest their selective targeting potential for prostate cancer cells and offer them as candidate therapeutic agents against prostate cancer. The inhibitory activities of some chemical compounds, such as (1.1-1.5 and 2.1-2.8) were assessed by performing the molecular docking study in the presence of AChE, BChE and prostate cancer protein. MM/GBSA methods are calculated binding free energy. Finally, ADME/T analysis was performed to examine the drug properties of the 13 studied molecules.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Karpenko Yuriy
- Department of Natural Sciences for Foreign Students and Toxicological Chemistry, Zaporizhzhia State Medical University, Zaporizhzhia, Ukraine
| | - Gulnur Kusdemir
- Molecular Biology and Genetics Department, Erzurum Technical University, Erzurum, Turkey
- High Technology Application and Research Center, Erzurum Technical University, Erzurum, Turkey
| | - Parchenko Volodymyr
- Department of Natural Sciences for Foreign Students and Toxicological Chemistry, Zaporizhzhia State Medical University, Zaporizhzhia, Ukraine
| | - Burak Tüzün
- Plant and Animal Production Department, Technical Sciences Vocational School of Sivas, Sivas Cumhuriyet University, Sivas, Turkey
| | - Parham Taslimi
- Department of Biotechnology, Faculty of Science, Bartin University, Bartin, Turkey
| | - Omer Faruk Karatas
- Molecular Biology and Genetics Department, Erzurum Technical University, Erzurum, Turkey
- High Technology Application and Research Center, Erzurum Technical University, Erzurum, Turkey
| | - Khilkovets Anastasia
- Department of Natural Sciences for Foreign Students and Toxicological Chemistry, Zaporizhzhia State Medical University, Zaporizhzhia, Ukraine
| | - Parchenko Maryna
- Department of Natural Sciences for Foreign Students and Toxicological Chemistry, Zaporizhzhia State Medical University, Zaporizhzhia, Ukraine
| | - Koray Sayın
- Deparment of Chemistry, Sivas Cumhuriyet University, Sivas, Turkey
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Rashdan HRM, El-Sayyad GS, Shehadi IA, Abdelmonsef AH. Antimicrobial Potency and E. coli β-Carbonic Anhydrase Inhibition Efficacy of Phenazone-Based Molecules. Molecules 2023; 28:7491. [PMID: 38005213 PMCID: PMC10672871 DOI: 10.3390/molecules28227491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Revised: 10/25/2023] [Accepted: 11/02/2023] [Indexed: 11/26/2023] Open
Abstract
In this investigation, 4-antipyrinecarboxaldhyde was reacted with methyl hydrazinecarbodithioate to afford the carbodithioate derivative 3. The as-prepared carbodithioate derivative 3 is considered to be a key molecule for the preparation of new antipyrine-1,3,4-thiadiazole-based molecules (4-9) through its reaction with the appropriate hydrazonoyl halides. Furthermore, a typical Biginelli three-component cyclocondensation reaction involving ethyl acetoacetate, 4-antipyrinecarboxaldhyde, and thiourea under the standard conditions is carried out in the presence of sulfuric acid to afford the corresponding antipyrine-pyrimidine hybrid molecule (10). The latter was submitted to react with hydrazine monohydrate to provide the corresponding hydrazide derivative (11) which, under reaction with ethyl acetoacetate in refluxing ethanol containing catalytic amount of acetic acid, afforded the corresponding derivative (12). The structure of the newly synthesized compounds was affirmed by their spectral and microanalytical data. We also screened for their antimicrobial potential (ZOI and MIC) and conducted a kinetic study. Additionally, the mechanism of biological action was assessed by a membrane leakage assay and SEM imaging technique. Moreover, the biological activities and the binding modes of these compounds were further supplemented by an in silico docking study against E. coli β-carbonic anhydrase. The amount of cellular protein released by E. coli is directly correlated to the concentration of compound 9, which was found to be 177.99 µg/mL following treatment with 1.0 mg/mL of compound 9. This finding supports compound 9's antibacterial properties and explains how the formation of holes in the E. coli cell membrane results in the release of proteins from the cytoplasm. The newly synthesized compounds represent acceptable antimicrobial activities with potential action against E. coli β-carbonic anhydrase. The docking studies and antimicrobial activity test proved that compound (9) declared a greater activity than the other synthesized compounds.
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Affiliation(s)
- Huda R M Rashdan
- Chemistry of Natural and Microbial Products Department, Pharmaceutical and Drug Industries Research Institute, National Research Centre, 33 El Buhouth St., Dokki, Giza 12622, Egypt
| | - Gharieb S El-Sayyad
- Department of Microbiology and Immunology, Faculty of Pharmacy, Ahram Canadian University (ACU), Giza 12566, Egypt
- Department of Microbiology and Immunology, Faculty of Pharmacy, Galala University, New Galala City, Suez 43511, Egypt
- Drug Microbiology Laboratory, Drug Radiation Research Department, National Center for Radiation Research and Technology (NCRRT), Egyptian Atomic Energy Authority (EAEA), Cairo 11765, Egypt
| | - Ihsan A Shehadi
- Chemistry Department, College of Sciences, University of Sharjah, Sharjah 27272, United Arab Emirates
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Auti PS, Jagetiya S, Paul AT. Chromone Containing Hybrid Analogs: Synthesis and Applications in Medicinal Chemistry. Chem Biodivers 2023; 20:e202300587. [PMID: 37332056 DOI: 10.1002/cbdv.202300587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Revised: 06/17/2023] [Accepted: 06/17/2023] [Indexed: 06/20/2023]
Abstract
The use of privileged scaffolds has proven beneficial for generating novel bioactive scaffolds in drug discovery program. Chromone is one such privileged scaffold that has been exploited for designing pharmacologically active analogs. The molecular hybridization technique combines the pharmacophoric features of two or more bioactive compounds to avail a better pharmacological activity in the resultant hybrid analogs. The current review summarizes the rationale and techniques involved in developing hybrid analogs of chromone, which show potential in fields of obesity, diabetes, cancer, Alzheimer's disease and microbial infections. Here the molecular hybrids of chromone with various pharmacologically active analogs or fragments (donepezil, tacrine, pyrimidines, azoles, furanchalcones, hydrazones, quinolines, etc.) are discussed with their structure-activity relationship against above-mentioned diseases. Detailed methodologies for the synthesis of corresponding hybrid analogs have also been described, with suitable synthetic schemes. The current review will shed light on various strategies utilized for the design of hybrid analogs in the field of drug discovery. The importance of hybrid analogs in various disease conditions is also illustrated.
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Affiliation(s)
- Prashant S Auti
- Laboratory of Natural Product Chemistry, Department of Pharmacy, Birla Institute of Technology and Science, Pilani (BITS Pilani), Pilani Campus, Pilani, 333031, Rajasthan, India
| | - Sakshi Jagetiya
- Laboratory of Natural Product Chemistry, Department of Pharmacy, Birla Institute of Technology and Science, Pilani (BITS Pilani), Pilani Campus, Pilani, 333031, Rajasthan, India
| | - Atish T Paul
- Laboratory of Natural Product Chemistry, Department of Pharmacy, Birla Institute of Technology and Science, Pilani (BITS Pilani), Pilani Campus, Pilani, 333031, Rajasthan, India
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Badran AS, Ibrahim MA. Synthesis, spectral characterization, DFT and in silico ADME studies of the novel pyrido[1,2-a]benzimidazoles and pyrazolo[3,4-b]pyridines. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.134454] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Çelik MS, Çetinus ŞA, Yenidünya AF, Çetinkaya S, Tüzün B. Biosorption of Rhodamine B dye from aqueous solution by Rhus coriaria L. plant: Equilibrium, kinetic, thermodynamic and DFT calculations. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.134158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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Ultrasound-Assisted and One-Pot Synthesis of New Fe3O4/Mo-MOF Magnetic Nano Polymer as a Strong Antimicrobial Agent and Efficient Nanocatalyst in the Multicomponent Synthesis of Novel Pyrano[2,3-d]pyrimidines Derivatives. J Inorg Organomet Polym Mater 2022. [DOI: 10.1007/s10904-022-02514-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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Doğan N, Yavuz SÇ, Sahin K, Orhan MD, Muhammed HK, Calis S, Küp FÖ, Avsar T, Akkoc S, Tapera M, Sahin O, Kilic T, Durdagi S, Saripinar E. Synthesis, Characterization, Biological Activity and Molecular Modeling Studies of Novel Aminoguanidine Derivatives. ChemistrySelect 2022. [DOI: 10.1002/slct.202202819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
Affiliation(s)
- Nuriye Doğan
- Department of Chemistry Erciyes University Kayseri Türkiye
| | - Sevtap Çağlar Yavuz
- Department of Medical Services and Technicians İliç Dursun Yıldırım Vocational School Erzincan Binali Yıldırım University 24700 Erzincan Türkiye
| | - Kader Sahin
- Computational Biology and Molecular Simulations Laboratory Department of Biophysics School of Medicine Bahcesehir University Istanbul Türkiye
- Department of Analytical Chemistry School of Pharmacy Bahcesehir University Istanbul Türkiye
| | - Muge Didem Orhan
- Department of Medical Biology School of Medicine Bahcesehir University Istanbul Türkiye
| | | | - Seyma Calis
- Department of Medical Biology School of Medicine Bahcesehir University Istanbul Türkiye
| | - Fatma Öztürk Küp
- Department of Biology Faculty of Science Erciyes University Kayseri Türkiye
| | - Timucin Avsar
- Department of Medical Biology School of Medicine Bahcesehir University Istanbul Türkiye
| | - Senem Akkoc
- Department of Basic Pharmaceutical Sciences Faculty of Pharmacy Suleyman Demirel University Isparta Türkiye
| | - Michael Tapera
- Department of Chemistry Erciyes University Kayseri Türkiye
| | - Onur Sahin
- Scientific and Technological Research Application and Research Center Sinop University Sinop Türkiye
| | - Turker Kilic
- Deperment of Neurosurgery School of Medicine Bahcesehir University Istanbul Türkiye
| | - Serdar Durdagi
- Computational Biology and Molecular Simulations Laboratory Department of Biophysics School of Medicine Bahcesehir University Istanbul Türkiye
- Department of Pharmaceutical Chemistry School of Pharmacy Bahcesehir University Istanbul Türkiye
| | - Emin Saripinar
- Department of Chemistry Erciyes University Kayseri Türkiye
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Exploring the multi-target enzyme inhibition potential of new sulfonamido-thiazoline derivatives; Synthesis and computational studies. RESULTS IN CHEMISTRY 2022. [DOI: 10.1016/j.rechem.2022.100656] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
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Mermer A, Volkan Bulbul M, Mervenur Kalender S, Keskin I, Tuzun B, Emre Eyupoglu O. Benzotriazole-oxadiazole hybrid Compounds: Synthesis, anticancer Activity, molecular docking and ADME profiling studies. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.119264] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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Bhat MA, Tüzün B, Alsaif NA, Ali Khan A, Naglah AM. Synthesis, characterization, molecular modeling against EGFR target and ADME/T analysis of novel purine derivatives of sulfonamides. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132600] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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Bilgiçli AT, Kandemir T, Tüzün B, Arıduru R, Günsel A, Abak Ç, Yarasir MN, Arabaci G. Octa‐substituted Zinc(II), Cu(II), and Co(II) phthalocyanines with 1‐(4‐hydroxyphenyl)propane‐1‐one: Synthesis, sensitive protonation behaviors, Ag(I) induced H‐type aggregation properties, antibacterial–antioxidant activity, and molecular docking studies. Appl Organomet Chem 2021. [DOI: 10.1002/aoc.6353] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
| | | | - Burak Tüzün
- Department of Chemistry Cumhuriyet University Sivas Turkey
| | - Rana Arıduru
- Department of Chemistry Sakarya University Sakarya Turkey
| | - Armağan Günsel
- Department of Chemistry Sakarya University Sakarya Turkey
| | - Çağla Abak
- Department of Chemistry Sakarya University Sakarya Turkey
| | | | - Gulnur Arabaci
- Department of Chemistry Sakarya University Sakarya Turkey
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