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Pająk M, Fichna J, Woźniczka M. Protonation constants of endo- and exogenous L-amino acids and their derivatives in aqueous and mixed solution: Unraveling molecular secrets. Q Rev Biophys 2024; 57:e10. [PMID: 39422089 DOI: 10.1017/s0033583524000118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2024]
Abstract
The aim of this review is to summarize the progress made in the determination of the protonation constants of biologically active ligands: endo- and exogenous L-amino acids and their derivatives in aqueous and mixed solutions using different experimental techniques. The knowledge of the protonation constants of the aforementioned ligands is crucial for the determination of the equilibrium constants of complex formation and thus for the understanding of complex biological reactions such as transamination, racemization, and decarboxylation. Thus, the protonation constants of ligands are a measure of their ability to form complexes with metal ions. This knowledge not only helps to understand fundamental biochemical processes, but also has practical applications in areas such as drug design, where ligands are often targeted for therapeutic purposes. The activity of the ligands tends to increase after complexation and their order is consistent with the values of the stepwise dissociation constants of the complexes formed. Understanding the properties of ligands by determining their protonation constants in different environments and their interactions with surrounding molecules is crucial to unraveling the complexity of biological systems.
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Affiliation(s)
- Marek Pająk
- Department of Physical and Biocoordination Chemistry, Medical University of Lodz, Lodz, Poland
| | - Jakub Fichna
- Department of Biochemistry, Medical University of Lodz, Lodz, Poland
| | - Magdalena Woźniczka
- Department of Physical and Biocoordination Chemistry, Medical University of Lodz, Lodz, Poland
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Crystal structure, spectroscopic studies, DFT calculations, and biological activity of 5-bromosalicylaldehyde–based Schiff bases. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132976] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Synthesis and Biological Evaluation of Novel Zn(II) and Cd(II) Schiff Base Complexes as Antimicrobial, Antifungal, and Antioxidant Agents. Bioinorg Chem Appl 2020. [DOI: 10.1155/2020/8866382] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
(E)-N,N-Dimethyl-2-((E-1-(2-(p-tolyl)hydrazono)propan-2-ylidene)hydrazine-1-carbothioamide (DMPTHP) and their Zn(II) and Cd(II) complexes have been synthesized and characterized. Different tools of analysis such as elemental analyses, IR, mass spectra, and 1H-NMR measurements were used to elucidate the structure of the synthesized compounds. According to these spectral results, the DMPTHP ligand behaved as a mononegatively charged tridentate anion. Modeling and docking studies were investigated and discussed. Novel Schiff base (DMPTHP) ligand protonation constants and their formation constants with Cd(II) and Zn(II) ions were measured in 50% DMSO solution at 15°C, 25°C, and 35°C at I = 0.1 mol·dm−3 NaNO3. The solution speciation of different species was measured in accordance with pH. Calculation and discussion of the thermodynamic parameters were achieved. Both log K1 and –ΔH1, for M(II)-thiosemicarbazone complexes were found to be somewhat larger than log K2 and –ΔH2, demonstrating a shift in the dentate character of DMPTHP from tridentate in 1 : 1 chelates to bidentate in 1 : 2; M : L chelates and steric hindrance were generated by addition of the 2nd molecule. The compounds prepared have significant activity as antioxidants, similar to ascorbic acid. It is hoped that the results will be beneficial to antimicrobial agent chemistry. The formed compounds acted as a potent antibacterial agent. Molecular docking studies were investigated and have proved that DMPTHP as antibacterial agents act on highly resistant strains of E. coli and also as an anticancer agent.
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Nano-synthesis, spectroscopic characterization, quantum chemical calculations, thermal properties and antimicrobial activity of (E)-N′-(2-hydroxybenzylidene)morpholine-4-carbothiohydrazide ligand and its metal complexes. Inorganica Chim Acta 2020. [DOI: 10.1016/j.ica.2019.119221] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Xiao Y, Cao C. Influence of substituent effects on the coordination ability of salicylaldehyde Schiff bases. J COORD CHEM 2019. [DOI: 10.1080/00958972.2018.1540780] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Yan Xiao
- School of Resource Environment and Safety Engineering, School of Chemistry and Chemical Engineering, Key Laboratory of Theoretical Organic Chemistry and Function Molecule, Ministry of Education, Hunan University of Science and Technology, Xiangtan, China
| | - Chenzhong Cao
- School of Resource Environment and Safety Engineering, School of Chemistry and Chemical Engineering, Key Laboratory of Theoretical Organic Chemistry and Function Molecule, Ministry of Education, Hunan University of Science and Technology, Xiangtan, China
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Synthesis, structural characterization, DFT studies and biological activity of Cu(II) and Ni(II) complexes of novel hydrazone. Inorganica Chim Acta 2018. [DOI: 10.1016/j.ica.2018.04.038] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Potentiometric and Speciation Studies on the Complex Formation Reactions of [Pd(2-methylaminomethyl)-pyridine)(H2O)2]2+ with Some Bio-active Ligands and Displacement Reaction of Coordinated Inosine. J SOLUTION CHEM 2017. [DOI: 10.1007/s10953-017-0621-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Milenković M, Pevec A, Turel I, Milenković M, Čobeljić B, Sladić D, Krstić N, Anđelković K. Synthesis, crystal structures, and antimicrobial activity of square-planar chloride and isocyanate Ni(II) complexes with the condensation product of 2-(diphenylphosphino)benzaldehyde and Girard’s T reagent. J COORD CHEM 2015. [DOI: 10.1080/00958972.2015.1055260] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
| | - Andrej Pevec
- Faculty of Chemistry and Chemical Technology, University of Ljubljana, Ljubljana, Slovenia
| | - Iztok Turel
- Faculty of Chemistry and Chemical Technology, University of Ljubljana, Ljubljana, Slovenia
| | - Marina Milenković
- Faculty of Pharmacy, Department of Microbiology and Immunology, University of Belgrade, Belgrade, Serbia
| | | | - Dušan Sladić
- Faculty of Chemistry, University of Belgrade, Belgrade, Serbia
| | - Natalija Krstić
- Institute of Chemistry, Technology and Metallurgy, University of Belgrade, Belgrade, Serbia
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Synthesis and antimicrobial properties of lipophilic Schiff base copper and palladium complexes. TRANSIT METAL CHEM 2015. [DOI: 10.1007/s11243-015-9953-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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Rayan AM, Ahmed MM, Barakat MH, Abdelkarim AT, El-Sherif AA. Complex formation of cetirizine drug with bivalent transition metal(II) ions in the presence of alanine: synthesis, characterization, equilibrium studies, and biological activity studies. J COORD CHEM 2015. [DOI: 10.1080/00958972.2014.994513] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
- Ahmed M. Rayan
- Faculty of Arts and Science, Department of Chemistry, Northern Border University, Rafha, KSA
- New-Valley Faculty of Education, Department of Sciences and Mathematics, Assiut University, Assiut, Egypt
| | - Mahmoud M. Ahmed
- New-Valley Faculty of Education, Department of Sciences and Mathematics, Assiut University, Assiut, Egypt
| | - Mohamed H. Barakat
- Holding Company for Water and Waste Water, The Reference Laboratory for Drinking Water, Inorganic Laboratory, Cairo, Egypt
| | | | - Ahmed A. El-Sherif
- Faculty of Arts and Science, Department of Chemistry, Northern Border University, Rafha, KSA
- Faculty of Science, Department of Chemistry, Cairo University, Cairo, Egypt
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Roseiro APS, Adão P, Galvão AM, Costa Pessoa J, Botelho do Rego AM, Carvalho MFNN. Oxygen activation by copper camphor complexes. Inorg Chem Front 2015. [DOI: 10.1039/c5qi00064e] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
In situreduction of CuCl2enables formation of Cu(i) complexes prone to activate molecular oxygen from air towards catalytic oxidation of 1,3-dicarbonyls.
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Affiliation(s)
- Alexandra P. S. Roseiro
- Centro de Química Estrutural
- Instituto Superior Técnico
- Universidade de Lisboa
- 1049-001 Lisboa
- Portugal
| | - Pedro Adão
- Centro de Química Estrutural
- Instituto Superior Técnico
- Universidade de Lisboa
- 1049-001 Lisboa
- Portugal
| | - Adelino M. Galvão
- Centro de Química Estrutural
- Instituto Superior Técnico
- Universidade de Lisboa
- 1049-001 Lisboa
- Portugal
| | - João Costa Pessoa
- Centro de Química Estrutural
- Instituto Superior Técnico
- Universidade de Lisboa
- 1049-001 Lisboa
- Portugal
| | - Ana M. Botelho do Rego
- Centro de Química-Física Molecular (CQFM) and Institute of Nanoscience and Nanotechnology (IN)
- Instituto Superior Técnico
- Universidade de Lisboa
- 1049-001 Lisboa
- Portugal
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Protonation equilibria of biologically active ligands in mixed aqueous organic solvents. Bioinorg Chem Appl 2014; 2014:626719. [PMID: 25197267 PMCID: PMC4150405 DOI: 10.1155/2014/626719] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2014] [Accepted: 07/16/2014] [Indexed: 11/29/2022] Open
Abstract
The review is mainly concerned with the protonation equilibria of biologically active ligands like amino acids, peptides, DNA constituents, and amino acid esters in nonaqueous media. Equilibrium concentrations of proton-ligand formation as a function of pH were investigated. Also, thermodynamics associated with protonation equilibria were also discussed.
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Kamecka A, Kurzak B. Review: Solution equilibria of ternary complexes formed from copper(II), aliphatic amines, and bioligands. J COORD CHEM 2014. [DOI: 10.1080/00958972.2014.950957] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
- Anna Kamecka
- Institute of Chemistry, Siedlce University of Natural Sciences and Humanities, Siedlce, Poland
| | - Barbara Kurzak
- Faculty of Chemistry, University of Opole, Opole, Poland
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