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Weinert C, Ćoćić D, Puchta R, van Eldik R. Selective Noble Gas Inclusion in Pentagon-Dodecahedral X 20-Cages. Molecules 2023; 28:5676. [PMID: 37570645 PMCID: PMC10420277 DOI: 10.3390/molecules28155676] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Revised: 07/12/2023] [Accepted: 07/14/2023] [Indexed: 08/13/2023] Open
Abstract
Using DFT-based computational chemistry calculations (ωB97XD/def2-tzvp//ωB97XD/def2-svp/svpfit + ZPE(ωB97XD/def2-svp/svpfit)), binding energies of noble gases encapsulated in a series of dodecahedrane molecules (general formula: X20H20 where X = C, Si, Ge, Sn and Pb, and X20 where X = N, P, As, Sb and Bi) were calculated to learn about the noble gas selectivity. Based on calculated binding energies, the Sn20H20 cage can best accommodate noble gases with a medium size radius (Ar and Kr), while the Pb20H20 dodecahedrane cage is best suited for noble gases with the larger radii (Xe and Rn). On the other hand, from the elements of the V main group of the periodic table, the Bi20 cage has shown the best results to selectively encapsulate Ar and Kr, with the amounts of energy being released being -5.24 kcal/mol and -6.13 kcal/mol, respectively. By monitoring the geometric changes of all here-reported host cages upon encapsulating the noble gas guest, the host has shown minor to no flexibility, testifying to the high rigidity of the dodecahedrane structure which was further reflected in very high encapsulating energies.
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Affiliation(s)
- Christopher Weinert
- Fakultät Angewandte Mathematik, Physik und Allgemeinwissenschaften, Technische Hochschule Nuremberg Georg Simon Ohm, Keßlerplatz 12, 90489 Nuremberg, Germany
| | - Dušan Ćoćić
- Department of Chemistry, Faculty of Science, University of Kragujevac, Radoja Domanovića 12, P.O. Box 60, 34000 Kragujevac, Serbia
| | - Ralph Puchta
- Fakultät Angewandte Mathematik, Physik und Allgemeinwissenschaften, Technische Hochschule Nuremberg Georg Simon Ohm, Keßlerplatz 12, 90489 Nuremberg, Germany
- Inorganic Chemistry, Department of Chemistry and Pharmacy, University of Erlangen-Nuremberg, Egerlandstr. 1, 91058 Erlangen, Germany
- Central Institute for Scientific Computing (CISC), University of Erlangen-Nuremberg, Martensstr. 5a, 91058 Erlangen, Germany
- Computer Chemistry Center, Department of Chemistry and Pharmacy, University of Erlangen-Nuremberg, Nägelsbachstr. 25, 91052 Erlangen, Germany
| | - Rudi van Eldik
- Inorganic Chemistry, Department of Chemistry and Pharmacy, University of Erlangen-Nuremberg, Egerlandstr. 1, 91058 Erlangen, Germany
- Faculty of Chemistry, Nicolaus Copernicus University in Toruń, Gagarina 7, 87-100 Toruń, Poland
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Tkachenko NV, Rublev P, Boldyrev AI, Lehn JM. Superalkali Coated Rydberg Molecules. Front Chem 2022; 10:880804. [PMID: 35494656 PMCID: PMC9043523 DOI: 10.3389/fchem.2022.880804] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 03/14/2022] [Indexed: 11/13/2022] Open
Abstract
A series of complexes of Na, K, NH4, and H3O with [bpy.bpy.bpy]cryptand, [2.2.2]cryptand, and spherical cryptand were investigated via DFT and ab initio methods. We found that by coating Rydberg molecules with the "organic skin" one could further decrease their ionization potential energy, reaching the values of ∼1.5 eV and a new low record of 1.3 eV. The neutral cryptand complexes in this sense possess a weakly bounded electron and may be considered as very strong reducing agents. Moreover, the presence of an organic cage increases the thermodynamic stability of Rydberg molecules making them stable toward the proton detachment.
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Affiliation(s)
- Nikolay V. Tkachenko
- Department of Chemistry and Biochemistry, Utah State University, Logan, UT, United States
| | - Pavel Rublev
- Department of Chemistry and Biochemistry, Utah State University, Logan, UT, United States
| | - Alexander I. Boldyrev
- Department of Chemistry and Biochemistry, Utah State University, Logan, UT, United States
| | - Jean-Marie Lehn
- Laboratoire de Chimie Supramoléculaire, Institut de Science et d’Ingénierie, Supramoléculaires Université de Strasbourg, Strasbourg, France
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Ćoćić D, Manaa A, Siegl S, Puchta R, Eldik R. [3.2.1] and [4.1.1] isomers of Lehn's [2.2.2] Cryptand: Prediction of ion selectivity by quantum chemical calculations XV**. Z Anorg Allg Chem 2021. [DOI: 10.1002/zaac.202000452] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Dušan Ćoćić
- Inorganic Chemistry Department of Chemistry and Pharmacy University of Erlangen-Nuremberg Egerlandstr. 1 91058 Erlangen Germany
- Central Institute for Scientific Computing (CISC) University of Erlangen-Nuremberg Martensstr. 5a 91058 Erlangen Germany
- Computer Chemistry Center Department of Chemistry and Pharmacy University of Erlangen-Nuremberg Nägelsbachstr. 25 91052 Erlangen Germany
- Department of Chemistry Faculty of Science University of Kragujevac Radoja Domanovića 12, P. O. Box 60 34000 Kragujevac Serbia
| | - Aliya Manaa
- Lothar-von-Faber-Schule Staatliche Fachoberschule Nuremberg Nuremberg Germany
| | - Selina Siegl
- Lothar-von-Faber-Schule Staatliche Fachoberschule Nuremberg Nuremberg Germany
| | - Ralph Puchta
- Inorganic Chemistry Department of Chemistry and Pharmacy University of Erlangen-Nuremberg Egerlandstr. 1 91058 Erlangen Germany
- Central Institute for Scientific Computing (CISC) University of Erlangen-Nuremberg Martensstr. 5a 91058 Erlangen Germany
- Computer Chemistry Center Department of Chemistry and Pharmacy University of Erlangen-Nuremberg Nägelsbachstr. 25 91052 Erlangen Germany
- Lothar-von-Faber-Schule Staatliche Fachoberschule Nuremberg Nuremberg Germany
| | - Rudi Eldik
- Inorganic Chemistry Department of Chemistry and Pharmacy University of Erlangen-Nuremberg Egerlandstr. 1 91058 Erlangen Germany
- Faculty of Chemistry Nicolaus Copernicus University Gagarina 7 87-100 Toruń Poland
- Faculty of Chemistry Jagiellonian University, Kraków Gronostajowa 2 30-087 Krakow Poland
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Ćoćić D, Puchta R, van Eldik R. Noble guests in organic cages – encapsulation of noble gases by cryptophane. J COORD CHEM 2020. [DOI: 10.1080/00958972.2020.1820494] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Dušan Ćoćić
- Department of Chemistry, Faculty of Science, University of Kragujevac, Kragujevac, Serbia
| | - Ralph Puchta
- Department of Chemistry and Pharmacy, Inorganic Chemistry, University of Erlangen-Nuremberg, Erlangen, Germany
- Department of Chemistry and Pharmacy, Computer Chemistry Center, University of Erlangen-Nuremberg, Erlangen, Germany
- Central Institute for Scientific Computing (ZISC), University of Erlangen-Nuremberg, Erlangen, Germany
| | - Rudi van Eldik
- Department of Chemistry and Pharmacy, Inorganic Chemistry, University of Erlangen-Nuremberg, Erlangen, Germany
- Faculty of Chemistry, Jagiellonian University, Krakow, Poland
- Faculty of Chemistry, Nicolaus Copernicus University, Toruń, Poland
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Palmer U, Puchta R. Wirt-Gast-Komplexe von [bfu.bfu.bfu]: Vorhersage von Ionenselektivitäten mittels quantenchemischer Rechnungen XIII. ZEITSCHRIFT FUR NATURFORSCHUNG SECTION B-A JOURNAL OF CHEMICAL SCIENCES 2020. [DOI: 10.1515/znb-2020-0065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
The CH2–O–C2H4–O–CH2 moieties in Lehn’s cryptand [2.2.2] have been substituted by 2,2′-bifurane groups to get the cryptand [bfu.bfu.bfu]. The ion selectivity of this new cryptand was investigated by DFT calculations (RB3LYP/LANL2DZp, RB3LYP/LACVP*, RBP86/LANL2DZp and RBP86/LACVP*) based on model equations and analysis of the [M ⊂ bfu.bfu.bfu]
n+ cryptate structures. The cryptand [bfu.bfu.bfu] is best suited for the alkali cations Na+ and K+, and the alkaline earth cation Sr2+ followed by Ca2+. The cavity of [bfu.bfu.bfu] is thus similar to that in [phen.phen.phen] or [bpy.bpy.bpy]. The selectivity of [bfu.bfu.bfu] is due to the flexibility of the OCCO und CN···NC dihedral angles. The results are independent of the selected DFT methods.
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Affiliation(s)
- Ursula Palmer
- Anorganische Chemie, Department Chemie und Pharmazie , Universität Erlangen-Nürnberg , Egerlandstr. 1, 91058 Erlangen , Germany
| | - Ralph Puchta
- Anorganische Chemie, Department Chemie und Pharmazie , Universität Erlangen-Nürnberg , Egerlandstr. 1, 91058 Erlangen , Germany
- Computer Chemie Center, Department Chemie und Pharmazie , Universität Erlangen-Nürnberg , Nägelsbachstr. 25, 91052 Erlangen , Germany
- Zentralinstitut für Scientific Computing (ZISC) , Universität Erlangen-Nürnberg , Martensstr. 5a, 91058 Erlangen , Germany
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Hubbard CD, Chatterjee D, Oszajca M, Polaczek J, Impert O, Chrzanowska M, Katafias A, Puchta R, van Eldik R. Inorganic reaction mechanisms. A personal journey. Dalton Trans 2020; 49:4599-4659. [PMID: 32162632 DOI: 10.1039/c9dt04620h] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
This review covers highlights of the work performed in the van Eldik group on inorganic reaction mechanisms over the past two decades in the form of a personal journey. Topics that are covered include, from NO to HNO chemistry, peroxide activation in model porphyrin and enzymatic systems, the wonder-world of RuIII(edta) chemistry, redox chemistry of Ru(iii) complexes, Ru(ii) polypyridyl complexes and their application, relevant physicochemical properties and reaction mechanisms in ionic liquids, and mechanistic insight from computational chemistry. In each of these sections, typical examples of mechanistic studies are presented in reference to related work reported in the literature.
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Affiliation(s)
- Colin D Hubbard
- Department of Chemistry and Pharmacy, University of Erlangen-Nuremberg, Egerlandstr. 1, 91058 Erlangen, Germany.
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