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Alispahic M, Endler L, Hess M, Hess C. Ornithobacterium rhinotracheale: MALDI-TOF MS and Whole Genome Sequencing Confirm That Serotypes K, L and M Deviate from Well-Known Reference Strains and Numerous Field Isolates. Microorganisms 2021; 9:microorganisms9051006. [PMID: 34067063 PMCID: PMC8151311 DOI: 10.3390/microorganisms9051006] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2021] [Revised: 05/02/2021] [Accepted: 05/05/2021] [Indexed: 11/17/2022] Open
Abstract
Ornithobacterium rhinotracheale is one of the most important bacterial agents of respiratory diseases in poultry. For correct identification and characterization of this fastidious bacterium, reliable diagnostic tools are essential. Still, phenotypic tests are used to identify O. rhinotracheale and serotyping is the most common method for characterization, despite known drawbacks and disadvantages such as divergent results, cross-reactivity between strains, or the non-typeability of strains. The intention of the present study was to evaluate MALDI-TOF MS and whole genome sequencing for the identification and characterization of O. rhinotracheale. For this purpose, a selection of 59 well-defined reference strains and 47 field strains derived from outbreaks on Austrian turkey farms were investigated by MALDI-TOF MS. The field strains originated from different geographical areas in Austria with some of the isolates derived from multiple outbreaks on farms within a year, or recurrent outbreaks over several years. MALDI-TOF MS proved a suitable method for identification of O. rhinotracheale to genus or species level except for 3 strains representing serotypes M, K and F. Phylogenetic analysis showed that most strains grouped within one cluster even though they were comprised of different serotypes, while serotypes F, K, and M clearly formed a different cluster. All field isolates from turkey farms clustered together, independent of the origin of the isolates, e.g., geographical area, multiple outbreaks within a year or recurrent outbreaks over several years. Whole genome sequencing of serotype M, K and F strains confirmed the extraordinary status and deviation from known fully-sequenced strains due to a lack of sequence similarity. This was further confirmed by alignments of single genes (16S-RNA and rpoB) and multilocus sequence typing although the demarcation was less obvious. Altogether, the results indicate that these three serotypes belong to a different species than O. rhinotracheale, and might even be members of multiple new species.
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Affiliation(s)
- Merima Alispahic
- Clinic for Poultry and Fish Medicine, Department for Farm Animals and Veterinary Public Health, University of Veterinary Medicine, 1210 Vienna, Austria; (M.H.); (C.H.)
- Correspondence: ; Tel.: +43-1-25077-4710; Fax: +43-1-25077-5192
| | - Lukas Endler
- Platform Bioinformatics and Biostatistics, Department of Biomedical Sciences, University of Veterinary Medicine, 1210 Vienna, Austria;
| | - Michael Hess
- Clinic for Poultry and Fish Medicine, Department for Farm Animals and Veterinary Public Health, University of Veterinary Medicine, 1210 Vienna, Austria; (M.H.); (C.H.)
| | - Claudia Hess
- Clinic for Poultry and Fish Medicine, Department for Farm Animals and Veterinary Public Health, University of Veterinary Medicine, 1210 Vienna, Austria; (M.H.); (C.H.)
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Kursa O, Tomczyk G, Sawicka-Durkalec A, Giza A, Słomiany-Szwarc M. Bacterial communities of the upper respiratory tract of turkeys. Sci Rep 2021; 11:2544. [PMID: 33510238 PMCID: PMC7843632 DOI: 10.1038/s41598-021-81984-0] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2020] [Accepted: 01/13/2021] [Indexed: 02/02/2023] Open
Abstract
The respiratory tracts of turkeys play important roles in the overall health and performance of the birds. Understanding the bacterial communities present in the respiratory tracts of turkeys can be helpful to better understand the interactions between commensal or symbiotic microorganisms and other pathogenic bacteria or viral infections. The aim of this study was the characterization of the bacterial communities of upper respiratory tracks in commercial turkeys using NGS sequencing by the amplification of 16S rRNA gene with primers designed for hypervariable regions V3 and V4 (MiSeq, Illumina). From 10 phyla identified in upper respiratory tract in turkeys, the most dominated phyla were Firmicutes and Proteobacteria. Differences in composition of bacterial diversity were found at the family and genus level. At the genus level, the turkey sequences present in respiratory tract represent 144 established bacteria. Several respiratory pathogens that contribute to the development of infections in the respiratory system of birds were identified, including the presence of Ornithobacterium and Mycoplasma OTUs. These results obtained in this study supply information about bacterial composition and diversity of the turkey upper respiratory tract. Knowledge about bacteria present in the respiratory tract and the roles they can play in infections can be useful in controlling, diagnosing and treating commercial turkey flocks.
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Affiliation(s)
- Olimpia Kursa
- Department of Poultry Diseases, National Veterinary Research Institute, Al. Partyzantów 57, 24-100, Pulawy, Poland.
| | - Grzegorz Tomczyk
- Department of Poultry Diseases, National Veterinary Research Institute, Al. Partyzantów 57, 24-100, Pulawy, Poland
| | - Anna Sawicka-Durkalec
- Department of Poultry Diseases, National Veterinary Research Institute, Al. Partyzantów 57, 24-100, Pulawy, Poland
| | - Aleksandra Giza
- Department of Omics Analyses, National Veterinary Research Institute, Al. Partyzantów 57, 24-100, Pulawy, Poland
| | - Magdalena Słomiany-Szwarc
- Department of Omics Analyses, National Veterinary Research Institute, Al. Partyzantów 57, 24-100, Pulawy, Poland
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Crispo M, Sentíes-Cué CG, Cooper GL, Mountainspring G, Corsiglia C, Bickford AA, Stoute ST. Otitis and meningoencephalitis associated with infectious coryza ( Avibacterium paragallinarum) in commercial broiler chickens. J Vet Diagn Invest 2018; 30:784-788. [PMID: 30129392 DOI: 10.1177/1040638718792964] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Infectious coryza, caused by Avibacterium paragallinarum, is an acute respiratory disease of poultry that can result in substantial morbidity, mortality, and economic losses. In March 2017, the Turlock branch of the California Animal Health and Food Safety laboratory system encountered an unusual clinical and pathologic presentation of infectious coryza in 6 live, 29-d-old, commercial broiler chickens that were submitted for diagnostic investigation. Antemortem evaluation revealed severe neurologic signs, including disorientation, torticollis, and opisthotonos. Swollen head-like syndrome and sinusitis were also present. Histologically, severe sinusitis, cranial osteomyelitis, otitis media and interna, and meningoencephalitis were noted, explaining the clinical signs described. A. paragallinarum was readily isolated from the upper and lower respiratory tract, brain, and cranial bones. Infectious bronchitis virus (IBV) was also detected by PCR, and IBV was isolated in embryonated chicken eggs. Based on sequencing analysis, the IBV appeared 99% homologous to strain CA1737. A synergistic effect between A. paragallinarum and IBV, resulting in exacerbation of clinical signs and increased mortality, may have occurred in this case. A. paragallinarum should be considered among the possible causes of neurologic signs in chickens. Appropriate media should be used for bacterial isolation, and the role of additional contributing factors and/or complicating agents should be investigated in cases of infectious coryza.
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Affiliation(s)
- Manuela Crispo
- California Animal Health & Food Safety Laboratory System, University of California-Davis, Turlock Branch, Turlock, CA (Crispo, Cooper, Bickford, Stoute).,Texas Veterinary Medical Diagnostic Laboratory, Texas A&M University, College Station, TX (Sentíes-Cué).,Foster Farms, Delhi, CA (Mountainspring, Corsiglia)
| | - C Gabriel Sentíes-Cué
- California Animal Health & Food Safety Laboratory System, University of California-Davis, Turlock Branch, Turlock, CA (Crispo, Cooper, Bickford, Stoute).,Texas Veterinary Medical Diagnostic Laboratory, Texas A&M University, College Station, TX (Sentíes-Cué).,Foster Farms, Delhi, CA (Mountainspring, Corsiglia)
| | - George L Cooper
- California Animal Health & Food Safety Laboratory System, University of California-Davis, Turlock Branch, Turlock, CA (Crispo, Cooper, Bickford, Stoute).,Texas Veterinary Medical Diagnostic Laboratory, Texas A&M University, College Station, TX (Sentíes-Cué).,Foster Farms, Delhi, CA (Mountainspring, Corsiglia)
| | - Grace Mountainspring
- California Animal Health & Food Safety Laboratory System, University of California-Davis, Turlock Branch, Turlock, CA (Crispo, Cooper, Bickford, Stoute).,Texas Veterinary Medical Diagnostic Laboratory, Texas A&M University, College Station, TX (Sentíes-Cué).,Foster Farms, Delhi, CA (Mountainspring, Corsiglia)
| | - Charles Corsiglia
- California Animal Health & Food Safety Laboratory System, University of California-Davis, Turlock Branch, Turlock, CA (Crispo, Cooper, Bickford, Stoute).,Texas Veterinary Medical Diagnostic Laboratory, Texas A&M University, College Station, TX (Sentíes-Cué).,Foster Farms, Delhi, CA (Mountainspring, Corsiglia)
| | - Arthur A Bickford
- California Animal Health & Food Safety Laboratory System, University of California-Davis, Turlock Branch, Turlock, CA (Crispo, Cooper, Bickford, Stoute).,Texas Veterinary Medical Diagnostic Laboratory, Texas A&M University, College Station, TX (Sentíes-Cué).,Foster Farms, Delhi, CA (Mountainspring, Corsiglia)
| | - Simone T Stoute
- California Animal Health & Food Safety Laboratory System, University of California-Davis, Turlock Branch, Turlock, CA (Crispo, Cooper, Bickford, Stoute).,Texas Veterinary Medical Diagnostic Laboratory, Texas A&M University, College Station, TX (Sentíes-Cué).,Foster Farms, Delhi, CA (Mountainspring, Corsiglia)
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Samy A, Naguib MM. Avian Respiratory Coinfection and Impact on Avian Influenza Pathogenicity in Domestic Poultry: Field and Experimental Findings. Vet Sci 2018; 5:E23. [PMID: 29495276 PMCID: PMC5876583 DOI: 10.3390/vetsci5010023] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2017] [Revised: 02/21/2018] [Accepted: 02/22/2018] [Indexed: 01/03/2023] Open
Abstract
The avian respiratory system hosts a wide range of commensal and potential pathogenic bacteria and/or viruses that interact with each other. Such interactions could be either synergistic or antagonistic, which subsequently determines the severity of the disease complex. The intensive rearing methods of poultry are responsible for the marked increase in avian respiratory diseases worldwide. The interaction between avian influenza with other pathogens can guarantee the continuous existence of other avian pathogens, which represents a global concern. A better understanding of the impact of the interaction between avian influenza virus and other avian respiratory pathogens provides a better insight into the respiratory disease complex in poultry and can lead to improved intervention strategies aimed at controlling virus spread.
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Affiliation(s)
- Ahmed Samy
- Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Dokki, Giza 12618, Egypt.
| | - Mahmoud M Naguib
- Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Dokki, Giza 12618, Egypt.
- Zoonosis Science Centre, Department of Medical Biochemistry and Microbiology, Uppsala University, Box 582, 751 21 Uppsala, Sweden.
- Infectious Medicine, Department of Medical Sciences, Uppsala University, 751 85 Uppsala, Sweden.
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Welchman DDB, Ainsworth HL, Jensen TK, Boye M, King SA, Koylass MS, Whatmore AM, Manvell RJ, Ayling RD, Dalton JR. Demonstration of Ornithobacterium rhinotracheale in pheasants (Phasianus colchicus) with pneumonia and airsacculitis. Avian Pathol 2013; 42:171-8. [PMID: 23581445 DOI: 10.1080/03079457.2013.778387] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
Outbreaks of respiratory disease were investigated in reared pheasants (Phasianus colchicus) aged approximately 18 to 32 weeks, released into the semi-wild on four shooting estates in southern England. The clinical signs in the affected birds included swelling of the face and eyes, loss of condition, gasping respirations and coughing. The gross pathology findings included sinusitis, airsacculitis, pleural oedema and lung lesions. The histopathological findings in the affected lungs were characterized by a granulomatous pneumonia. Ornithobacterium rhinotracheale (ORT) was isolated from respiratory tract tissues, and 16S rRNA gene sequencing on three isolates revealed two distinct genotypes, one previously associated with some electrophoretic type (ET) 1 strains and the other a novel genotype that clustered among sequences previously associated with ET 3, ET 4, ET 5 and ET 6 isolates. The localization of ORT within the lung tissue was demonstrated by fluorescent in-situ hybridization in the bronchial exudate of three cases, although not within the granulomatous lesions themselves. In each case, ORT was identified as part of a complex of other respiratory agents including avian paramyxovirus type 2, avian coronavirus, Mycoplasma gallisepticum, Mycoplasma synoviae and other Mycoplasma species, Escherichia coli, Pasteurella multocida, other Pasteurellaceae and Syngamus trachea, suggesting synergism with other agents. Exposure to other intercurrent factors, including adverse weather conditions and internal parasitism, may also have exacerbated the severity of disease.
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Affiliation(s)
- D de B Welchman
- Animal Health and Veterinary Laboratories Agency, Itchen Abbas, Winchester, UK.
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Isolation and characterization of small-colony variants of Ornithobacterium rhinotracheale. J Clin Microbiol 2013; 51:3228-36. [PMID: 23863572 DOI: 10.1128/jcm.01337-13] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Ornithobacterium rhinotracheale is a Gram-negative bacterium associated with respiratory diseases in many avian species, with worldwide distribution, and it causes significant economic loss to the poultry industry. In this study, the isolation and characterization of O. rhinotracheale small-colony variants (SCVs) are described for the first time. O. rhinotracheale isolates (n = 27) were recovered from tracheal samples (n = 321) collected from different avian species with clinical signs of respiratory disease. Of the 27 O. rhinotracheale isolates, 21 (77.8%) showed SCVs in their primary cultures. Five O. rhinotracheale SCV isolates showed high levels of stability and were chosen for further characterization with their wild-type (WT) isolates. Stable O. rhinotracheale SCVs were oxidase negative, while their WT isolates were positive. Growth curves for stable O. rhinotracheale SCVs indicated lower growth rates and longer lag phases than for their WT isolates. Furthermore, it was possible to increase the efficacy of the broth medium in supporting the growth of O. rhinotracheale WT isolates by supplementing it with 5% fetal bovine serum (FBS) and 2% IsoVitaleX Enrichment. Antibiotic susceptibility tests showed that O. rhinotracheale SCVs had higher MIC values than their WT isolates. This study suggests that successful antibiotic treatment of respiratory diseases associated with O. rhinotracheale must take into consideration the resistance patterns of O. rhinotracheale SCVs. Intracellular persistence in murine RAW 264.7 macrophages revealed that O. rhinotracheale SCV28 had higher survival rates than its WT isolate. Finally, small-colony variants may be important contributors to the pathogenesis of O. rhinotracheale.
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