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Speciale I, Notaro A, Abergel C, Lanzetta R, Lowary TL, Molinaro A, Tonetti M, Van Etten JL, De Castro C. The Astounding World of Glycans from Giant Viruses. Chem Rev 2022; 122:15717-15766. [PMID: 35820164 PMCID: PMC9614988 DOI: 10.1021/acs.chemrev.2c00118] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
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Viruses are a heterogeneous ensemble of entities, all
sharing the
need for a suitable host to replicate. They are extremely diverse,
varying in morphology, size, nature, and complexity of their genomic
content. Typically, viruses use host-encoded glycosyltransferases
and glycosidases to add and remove sugar residues from their glycoproteins.
Thus, the structure of the glycans on the viral proteins have, to
date, typically been considered to mimick those of the host. However,
the more recently discovered large and giant viruses differ from this
paradigm. At least some of these viruses code for an (almost) autonomous
glycosylation pathway. These viral genes include those that encode
the production of activated sugars, glycosyltransferases, and other
enzymes able to manipulate sugars at various levels. This review focuses
on large and giant viruses that produce carbohydrate-processing enzymes.
A brief description of those harboring these features at the genomic
level will be discussed, followed by the achievements reached with
regard to the elucidation of the glycan structures, the activity of
the proteins able to manipulate sugars, and the organic synthesis
of some of these virus-encoded glycans. During this progression, we
will also comment on many of the challenging questions on this subject
that remain to be addressed.
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Affiliation(s)
- Immacolata Speciale
- Department of Agricultural Sciences, University of Napoli, Via Università 100, 80055 Portici, Italy
| | - Anna Notaro
- Department of Agricultural Sciences, University of Napoli, Via Università 100, 80055 Portici, Italy.,Centre National de la Recherche Scientifique, Information Génomique & Structurale, Aix-Marseille University, Unité Mixte de Recherche 7256, IMM, IM2B, 13288 Marseille, Cedex 9, France
| | - Chantal Abergel
- Centre National de la Recherche Scientifique, Information Génomique & Structurale, Aix-Marseille University, Unité Mixte de Recherche 7256, IMM, IM2B, 13288 Marseille, Cedex 9, France
| | - Rosa Lanzetta
- Department of Chemical Sciences, University of Napoli, Via Cintia 4, 80126 Napoli, Italy
| | - Todd L Lowary
- Institute of Biological Chemistry, Academia Sinica, Academia Road, Section 2, Nangang 11529, Taipei, Taiwan
| | - Antonio Molinaro
- Department of Chemical Sciences, University of Napoli, Via Cintia 4, 80126 Napoli, Italy
| | - Michela Tonetti
- Department of Experimental Medicine and Center of Excellence for Biomedical Research, University of Genova, 16132 Genova, Italy
| | - James L Van Etten
- Nebraska Center for Virology, University of Nebraska, Lincoln, Nebraska 68583-0900, United States.,Department of Plant Pathology, University of Nebraska, Lincoln, Nebraska 68583-0722, United States
| | - Cristina De Castro
- Department of Agricultural Sciences, University of Napoli, Via Università 100, 80055 Portici, Italy
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Singh Y, Cudic P, Cudic M. Exploring Glycan Binding Specificity of Odorranalectin by Alanine Scanning Library. European J Org Chem 2022; 2022. [PMID: 36120398 PMCID: PMC9479679 DOI: 10.1002/ejoc.202200302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Fluorescently labelled alanine scan analogues of odorranalectin (OL), a cyclic peptide that exhibits lectin like properties, were screened for binding BSA-conjugated monosaccharides using an enzyme-linked lectin assay (ELLA). Results revealed that Lys5, Phe7, Tyr9, Gly12, Leu14, and Thr17 were crucial for binding BSA-L-fucose, BSA-D-galactose and BSA-N-acetyl-D-galactosamine. Notably, Ala substitution of Ser3, Pro4, and Val13 resulted in higher binding affinities compared to the native OL. The obtained data also indicated that Arg8 plays an important role in differentiation of binding for BSA-L-fucose/D-galactose from BSA-N-acetyl-D-galactosamine. The thermodynamics of binding of the selected alanine analogues was evaluated by isothermal titration calorimetry. Low to moderate binding affinities were determined for the tetravalent MUC1 glycopeptide and asialofetuin, respectively, and high for the fucose rich polysaccharide, fucoidan. The thermodynamic profile of interactions with asialofetuin exhibits shift to an entropy-driven mechanism compared to the fucoidan, which displayed an enthalpyentropy compensation, typically associated with the carbohydratelectin recognition process.
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Affiliation(s)
- YashoNandini Singh
- Department of Chemistry and Biochemistry Florida Atlantic University 777 Glades Road Boca Raton Florida 33431 United States
| | - Predrag Cudic
- Department of Chemistry and Biochemistry Florida Atlantic University 777 Glades Road Boca Raton Florida 33431 United States
| | - Maré Cudic
- Department of Chemistry and Biochemistry Florida Atlantic University 777 Glades Road Boca Raton Florida 33431 United States
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Džubák P, Gurská S, Bogdanová K, Uhríková D, Kanjaková N, Combet S, Klunda T, Kolář M, Hajdúch M, Poláková M. Antimicrobial and cytotoxic activity of (thio)alkyl hexopyranosides, nonionic glycolipid mimetics. Carbohydr Res 2020; 488:107905. [DOI: 10.1016/j.carres.2019.107905] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Revised: 11/21/2019] [Accepted: 12/23/2019] [Indexed: 02/07/2023]
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Singh Y, Rodriguez Benavente MC, Al-Huniti MH, Beckwith D, Ayyalasomayajula R, Patino E, Miranda WS, Wade A, Cudic M. Positional Scanning MUC1 Glycopeptide Library Reveals the Importance of PDTR Epitope Glycosylation for Lectin Binding. J Org Chem 2019; 85:1434-1445. [PMID: 31799848 PMCID: PMC7012140 DOI: 10.1021/acs.joc.9b02396] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
One of the main barriers to explaining the functional significance of glycan-based changes in cancer is the natural epitope heterogeneity found on the surface of cancer cells. To help address this knowledge gap, we focused on designing synthetic tools to explore the role of tumor-associated glycans of MUC1 in the formation of metastasis via association with lectins. In this study, we have synthesized for the first time a MUC1-derived positional scanning synthetic glycopeptide combinatorial library (PS-SGCL) that vary in number and location of cancer-associated Tn antigen using the "tea bag" approach. The determination of the isokinetic ratios necessary for the equimolar incorporation of (glyco)amino acids mixtures to resin-bound amino acid was determined, along with developing an efficient protocol for on resin deprotection of O-acetyl groups. Enzyme-linked lectin assay was used to screen PS-SGCL against two plant lectins, Glycine max soybean agglutinin and Vicia villosa. The results revealed a carbohydrate density-dependent affinity trend and site-specific glycosylation requirements for high affinity binding to these lectins. Hence, PS-SGCLs provide a platform to systematically elucidate MUC1-lectin binding specificities, which in the long term may provide a rational design for novel inhibitors of MUC1-lectin interactions involved in tumor spread and glycopeptide-based cancer vaccines.
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Affiliation(s)
- YashoNandini Singh
- From the Department of Chemistry and Biochemistry, Charles E. Schmidt College of Science , Florida Atlantic University , 777 Glades Road , Boca Raton , Florida 33431 , United States
| | - Maria C Rodriguez Benavente
- From the Department of Chemistry and Biochemistry, Charles E. Schmidt College of Science , Florida Atlantic University , 777 Glades Road , Boca Raton , Florida 33431 , United States
| | - Mohammed H Al-Huniti
- From the Department of Chemistry and Biochemistry, Charles E. Schmidt College of Science , Florida Atlantic University , 777 Glades Road , Boca Raton , Florida 33431 , United States
| | - Donella Beckwith
- From the Department of Chemistry and Biochemistry, Charles E. Schmidt College of Science , Florida Atlantic University , 777 Glades Road , Boca Raton , Florida 33431 , United States
| | - Ramya Ayyalasomayajula
- From the Department of Chemistry and Biochemistry, Charles E. Schmidt College of Science , Florida Atlantic University , 777 Glades Road , Boca Raton , Florida 33431 , United States
| | - Eric Patino
- From the Department of Chemistry and Biochemistry, Charles E. Schmidt College of Science , Florida Atlantic University , 777 Glades Road , Boca Raton , Florida 33431 , United States
| | - William S Miranda
- From the Department of Chemistry and Biochemistry, Charles E. Schmidt College of Science , Florida Atlantic University , 777 Glades Road , Boca Raton , Florida 33431 , United States
| | - Alex Wade
- From the Department of Chemistry and Biochemistry, Charles E. Schmidt College of Science , Florida Atlantic University , 777 Glades Road , Boca Raton , Florida 33431 , United States
| | - Maré Cudic
- From the Department of Chemistry and Biochemistry, Charles E. Schmidt College of Science , Florida Atlantic University , 777 Glades Road , Boca Raton , Florida 33431 , United States
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