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Sun A, Li Z, Wang Y, Meng S, Zhang X, Meng X, Li S, Li Z, Li Z. Stereocontrolled Synthesis of α-3-Deoxy-d-manno-oct-2-ulosonic Acid (α-Kdo) Glycosides Using C3-p-Tolylthio-Substituted Kdo Donors: Access to Highly Branched Kdo Oligosaccharides. Angew Chem Int Ed Engl 2024; 63:e202313985. [PMID: 38014418 DOI: 10.1002/anie.202313985] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Revised: 11/05/2023] [Accepted: 11/27/2023] [Indexed: 11/29/2023]
Abstract
3-Deoxy-d-manno-oct-2-ulosonic acid (Kdo) is an eight-carbon monosaccharide found widely in bacterial lipopolysaccharides (LPSs) and capsule polysaccharides (CPSs). We developed an indirect method for the stereoselective synthesis of α-Kdo glycosides with a C3-p-tolylthio-substituted Kdo phosphite donor. The presence of the p-tolylthio group enhanced the reactivity, suppressed the formation of elimination by-products (2,3-enes), and provided complete α-stereocontrol. A variety of Kdo α-glycosides were synthesized by our method in excellent yields (up to 98 %). After glycosylation, the p-tolylthio group can be efficiently removed by free-radical reduction. Subsequently, the orthogonality of the phosphite donor and thioglycoside donor was demonstrated by the one-pot synthesis of a trisaccharide in Helicobacter pylori and Neisseria meningitidis LPS. Moreover, an efficient total synthesis route to the challenging 4,5-branched Kdo trisaccharide in LPSs from several A. baumannii strains was highlighted. To demonstrate the high reactivity of our approach further, the highly crowded 4,5,7,8-branched Kdo pentasaccharide was synthesized as a model molecule for the first time. Additionally, the reaction mechanism was investigated by DFT calculations.
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Affiliation(s)
- Ao Sun
- State Key Laboratory of Natural and Biomimetic Drugs, Department of Chemical Biology, School of Pharmaceutical Sciences, Peking University, Beijing, 100191, China
| | - Zipeng Li
- State Key Laboratory of Natural and Biomimetic Drugs, Department of Chemical Biology, School of Pharmaceutical Sciences, Peking University, Beijing, 100191, China
| | - Yuchao Wang
- State Key Laboratory of Natural and Biomimetic Drugs, Department of Chemical Biology, School of Pharmaceutical Sciences, Peking University, Beijing, 100191, China
| | - Shuai Meng
- Key Laboratory of Tropical Biological Resources of Ministry of Education, School of Pharmaceutical Sciences, College of Marine Science, Hainan University, Haikou, 570228, China
| | - Xiao Zhang
- State Key Laboratory of Natural and Biomimetic Drugs, Department of Chemical Biology, School of Pharmaceutical Sciences, Peking University, Beijing, 100191, China
| | - Xiangbao Meng
- State Key Laboratory of Natural and Biomimetic Drugs, Department of Chemical Biology, School of Pharmaceutical Sciences, Peking University, Beijing, 100191, China
| | - Shuchun Li
- State Key Laboratory of Natural and Biomimetic Drugs, Department of Chemical Biology, School of Pharmaceutical Sciences, Peking University, Beijing, 100191, China
| | - Zhongtang Li
- State Key Laboratory of Natural and Biomimetic Drugs, Department of Chemical Biology, School of Pharmaceutical Sciences, Peking University, Beijing, 100191, China
| | - Zhongjun Li
- State Key Laboratory of Natural and Biomimetic Drugs, Department of Chemical Biology, School of Pharmaceutical Sciences, Peking University, Beijing, 100191, China
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2
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Hassan AA, Oscarson S. A General Method for the Divergent Synthesis of C‐9 Functionalised Sialic Acid Derivatives. European J Org Chem 2020. [DOI: 10.1002/ejoc.202001049] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Abdullah A. Hassan
- Centre for Synthesis and Chemical Biology University College Dublin Dublin 4 Ireland
| | - Stefan Oscarson
- Centre for Synthesis and Chemical Biology University College Dublin Dublin 4 Ireland
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3
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Kosma P, Reiter A, Zamyatina A, Wimmer N, Glück A, Brade H. Synthesis of inner core antigens related to Chlamydia, Pseudomonas and Acinetobacter LPS. ACTA ACUST UNITED AC 2016. [DOI: 10.1177/09680519990050031001] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Chemical syntheses of inner core determinants have been performed to provide defined artificial antigens (BSA-glycoconjugates) for characterization of monoclonal antibodies directed against important epitopes residing in the inner core of bacterial lipopolysaccharides. Efficient block synthesis of Kdo oligosaccharides has been employed to prepare the allyl glycoside [5] corresponding to the Chlamydia-specific Kdo trisaccharide epitope, to be used in crystallization and NMR (transfer NOe) experiments. Human pathogenic strains of Pseudomonas aeruginosa of RNA group I contain a highly phosphorylated heptose region with a 7- O-carbamoyl L- glycero-D- mannoheptose moiety which may be exploited as immunochemical marker for pathogenic Pseudomonas species. The 7- O-carbamoyl-substituted heptoside [12] as well as the disaccharides 7- O-carbamoyl-L- gro-α-D- manHep p- (1→3)-L- gro-α-D- manHep p-(1→O-Allyl) [23] and α-D-Gal pNAc-(1→3)-L- gro-α-D- manHep p-(1→O-Allyl) [30] were synthesized via regioselective formation of a 6′,7′- O-carbonate group followed by ring opening with NH3/NH4HCO3 to give the 7- O-carbamate in high yields. Finally, glycosides of the Kdo-isosteric D- glycero-D- talo-2-octulosonic acid (Ko) occurring in Acinetobacter spp. have been prepared via intermediate orthoester formation and TMSO-triflate-catalyzed rearrangement into α-ketosides. Coupling with a Kdo bromide donor and deblocking afforded the disaccharide α-Kdo-(2→4)-α-Ko-(2→O-Allyl) [43].
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Affiliation(s)
- Paul Kosma
- Institute of Chemistry, University of Agricultural Sciences Vienna, Wien, Austria
| | - Andreas Reiter
- Institute of Chemistry, University of Agricultural Sciences Vienna, Wien, Austria
| | - Alla Zamyatina
- Institute of Chemistry, University of Agricultural Sciences Vienna, Wien, Austria
| | - Norbert Wimmer
- Institute of Chemistry, University of Agricultural Sciences Vienna, Wien, Austria
| | - Alexander Glück
- Institute of Chemistry, University of Agricultural Sciences Vienna, Wien, Austria
| | - Helmut Brade
- Research Center Borstel, Center for Medicine and Biosciences, Borstel, Germany
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4
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Abstract
Glycosylation chemistry of 3-deoxy-D-manno-oct-2-ulosonic acid units has been considerably developed within the last decade. This review covers major achievements with respect to improved yields and anomeric selectivity as well as suppression of the elimination side reaction via selection of dedicated protecting groups and appropriate activation of the anomeric center.
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Affiliation(s)
- Paul Kosma
- University of Natural Resources and Life Sciences-Vienna, Department of Chemistry, Muthgasse 18, A-1190 Vienna, Austria
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5
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Giguère D. Surface polysaccharides from Acinetobacter baumannii : Structures and syntheses. Carbohydr Res 2015; 418:29-43. [DOI: 10.1016/j.carres.2015.10.001] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2015] [Revised: 09/30/2015] [Accepted: 10/03/2015] [Indexed: 12/31/2022]
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6
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Christensen HM, Oscarson S, Jensen HH. Common side reactions of the glycosyl donor in chemical glycosylation. Carbohydr Res 2015; 408:51-95. [DOI: 10.1016/j.carres.2015.02.007] [Citation(s) in RCA: 82] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2014] [Revised: 02/12/2015] [Accepted: 02/18/2015] [Indexed: 12/13/2022]
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7
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Pokorny B, Kosma P. Synthesis of chlamydia lipopolysaccharide haptens through the use of α-specific 3-iodo-Kdo fluoride glycosyl donors. Chemistry 2015; 21:305-13. [PMID: 25354167 PMCID: PMC4768360 DOI: 10.1002/chem.201405424] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2014] [Indexed: 12/20/2022]
Abstract
A scalable approach towards high-yielding and (stereo)selective glycosyl donors of the 2-ulosonic acid Kdo (3-deoxy-D-manno-oct-2-ulosonic acid) is a fundamental requirement for the development of vaccines against Gram-negative bacteria. Herein, we disclose a short synthetic route to 3-iodo Kdo fluoride donors from Kdo glycal esters that enable efficient α-specific glycosylations and significantly suppress the elimination side reaction. The potency of these donors is demonstrated in a straightforward, six-step synthesis of a branched Chlamydia-related Kdo-trisaccharide ligand without the need for protecting groups at the Kdo glycosyl acceptor. The approach was further extended to include sequential iteration of the basic concept to produce the linear Chlamydia-specific α-Kdo-(2→8)-α-Kdo-(2→4)-α-Kdo trisaccharide in a good overall yield.
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Affiliation(s)
- Barbara Pokorny
- Department of Chemistry, University of Natural Resources and Life Sciences-Vienna, Muthgasse 18, A-1190 Vienna, Austria
| | - Paul Kosma
- Department of Chemistry, University of Natural Resources and Life Sciences-Vienna, Muthgasse 18, A-1190 Vienna, Austria
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Pokorny B, Kosma P. First and stereoselective synthesis of an α-(2→5)-linked disaccharide of 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo). Org Lett 2015; 17:110-3. [PMID: 25496419 PMCID: PMC4284650 DOI: 10.1021/ol5033128] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2014] [Indexed: 12/02/2022]
Abstract
Resistance of bacterial pathogens toward antibiotics has revived interest in lipopolysaccharide (LPS) motifs as potential therapeutic targets. The LPS of several pathogenic Acinetobacter strains comprises a 4,5-branched Kdo trisaccharide containing an uncommon (2→5)-linkage. In this contribution the first stereoselective glycosylation method for obtaining an α-Kdo-(2→5)-α-Kdo disaccharide in good yield is highlighted. The synthetic approach used for accessing this linkage type will allow for future studies of the immunoreactivity associated with this unique bacterial Kdo inner core structure.
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Affiliation(s)
- Barbara Pokorny
- Department
of Chemistry, University of Natural Resources
and Life Sciences-Vienna, Muthgasse 18, A-1190 Vienna, Austria
| | - Paul Kosma
- Department
of Chemistry, University of Natural Resources
and Life Sciences-Vienna, Muthgasse 18, A-1190 Vienna, Austria
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9
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Zähringer U, Kawahara K, Kosma P. Isolation and structural characterization of a (Kdo-isosteric) D-glycero-α-D-talo-oct-2-ulopyranosidonic acid (Ko) interlinking lipid A and core oligosaccharide in the lipopolysaccharide of Acinetobacter calcoaceticus NCTC 10305. Carbohydr Res 2013; 378:63-70. [PMID: 23743267 DOI: 10.1016/j.carres.2013.05.003] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2013] [Revised: 04/30/2013] [Accepted: 05/02/2013] [Indexed: 11/25/2022]
Abstract
In Acinetobacter calcoaceticus NCTC 10305 and A. haemolyticus NCTC 10305 lipopolysaccharide (LPS) a Kdo (3-deoxy-D-manno-oct-2-ulosonic acid)-related octulosonic acid (Ko) interlinks the lipid A with the core-oligosaccharide. This Ko replaces the first Kdo (Kdo(I)) attached to the lipid A backbone in the LPS. The only structural difference between Kdo and Ko is the 3-hydroxylation. After the discovery of the final step in Ko-biosynthesis it is now generally accepted that Ko is structurally related to Kdo, although a final proof so far is lacking. In the present paper we describe the stereochemical determination of the natural Ko isolated from the LPS of A. calcoaceticus NCTC 10305 by chemical, mass spectrometry (MS), and (1)H and (13)C NMR spectroscopy. Our results show that in A. calcoaceticusd-glycero-α-D-talo-oct-2-ulopyranosonic acid (DgαDt-Kop) represents the Kdo-related sugar interlinking the core-oligosaccharide and the lipid A backbone.
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Affiliation(s)
- Ulrich Zähringer
- Research Center Borstel, Leibniz-Center for Medicine and Biosciences, Parkallee 1-40, D-23845 Borstel, Germany.
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10
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Qian Y, Feng J, Parvez M, Ling CC. Unexpected Anomeric Selectivity of a 1-C-Arylglycal Donor in Kdo Glycoside Synthesis. J Org Chem 2011; 77:96-107. [DOI: 10.1021/jo201531j] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yuxin Qian
- Alberta Ingenuity Centre for Carbohydrate
Science,
Department of Chemistry, University of Calgary, 2500 University Drive NW, Calgary, Alberta T3G 3M9, Canada
| | - Jianhao Feng
- Alberta Ingenuity Centre for Carbohydrate
Science,
Department of Chemistry, University of Calgary, 2500 University Drive NW, Calgary, Alberta T3G 3M9, Canada
| | - Masood Parvez
- Alberta Ingenuity Centre for Carbohydrate
Science,
Department of Chemistry, University of Calgary, 2500 University Drive NW, Calgary, Alberta T3G 3M9, Canada
| | - Chang-Chun Ling
- Alberta Ingenuity Centre for Carbohydrate
Science,
Department of Chemistry, University of Calgary, 2500 University Drive NW, Calgary, Alberta T3G 3M9, Canada
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Tanaka H, Takahashi D, Takahashi T. Stereoselective Synthesis of Oligo-α(2,8)-3-deoxy-D-manno-2-octulosonic Acid Derivatives. Angew Chem Int Ed Engl 2006. [DOI: 10.1002/ange.200503299] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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12
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Tanaka H, Takahashi D, Takahashi T. Stereoselective Synthesis of Oligo-α(2,8)-3-deoxy-D-manno-2-octulosonic Acid Derivatives. Angew Chem Int Ed Engl 2006; 45:770-3. [PMID: 16374791 DOI: 10.1002/anie.200503299] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Hiroshi Tanaka
- Department of Applied Chemistry, Graduate School of Science and Engineering, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro, Tokyo 152-8552, Japan
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13
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Kirschning A, Jesberger M, Schönberger A. The first polymer-assisted solution-phase synthesis of deoxyglycosides. Org Lett 2001; 3:3623-6. [PMID: 11700097 DOI: 10.1021/ol016545v] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
[reaction--see text] A glycosylation protocol for the synthesis of 2-deoxyglycosides has been developed which is based on the use of polymer-bound reagents. Glycals are transformed into 2-iodoglycosyl acetates using polymer-bound bis(acetoxy)iodate(I) complex (1). Activation of the anomeric center is achieved by employing polymer-bound silyl triflate (2). In the presence of different glycosyl acceptors, 2-deoxy-2-iodoglycosides are generated in very good yields. Furthermore, it is shown that this method can be embedded in multistep sequences toward glycosylated testosterone and rhodinosyl-olivosyl-olivoside.
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Affiliation(s)
- A Kirschning
- Institut für Organische Chemie der Universität Hannover, Schneiderberg 1B, D-30167 Hannover, Germany.
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14
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Kosma P, Reiter A, Hofinger A, Brade L, Brade H. Synthesis of neoglycoproteins containing Kdo epitopes specific for Chlamydophila psittaci lipopolysaccharide. JOURNAL OF ENDOTOXIN RESEARCH 2001; 6:57-69. [PMID: 11061033 DOI: 10.1177/09680519000060010801] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
The oligosaccharides alpha-Kdop-(2-->8)-alpha-Kdop-(2-->6)-beta-D- GlcpNAc-(1-->OAll) 4, alpha-Kdop-(2-->4)-alpha- Kdop-(2-->4)-alpha-Kdop-(2-->6)-beta-D-GlcpNAc-(1-->OAll+ ++) 10, and the branched Kdo tetrasaccharide alpha- Kdop-(2-->4)-[alpha-Kdop-(2-->8)]-alpha-Kdop-(2-->4)-a lpha-Kdop-(2-->OAll) 21 have been prepared using en bloc transfer of Kdo oligosaccharide bromide donors to protected mono- or disaccharide acceptors. Radical addition of cysteamine to the anomeric allyl glycosides afforded good yields of the corresponding 3-(2-aminoethylthio)propyl glycosides 5, 11 and 22. The spacer ligands were activated with thiophosgene and reacted with bovine serum albumin to give the neoglycoconjugates 6, 12 and 23 which were used to prepare solid-phase antigens in enzyme immuno-assays for the characterization of monoclonal antibodies against chlamydial LPS. The data showed that the (2-->8)-linked Kdo disaccharide and the (2-->8)-(2-->4)-linked Kdo trisaccharide portion of the neoglycoconjugate 23 were not available for binding of antibodies which recognize these structures as di- and trisaccharide, respectively.
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Affiliation(s)
- P Kosma
- Department of Chemistry, University of Agricultural Sciences, Vienna, Austria.
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15
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Wimmer N, Brade H, Kosma P. Synthesis of neoglycoproteins containing D-glycero-D-talo-oct-2-ulopyranosylonic acid (Ko) ligands corresponding to core units from Burkholderia and Acinetobacter lipopolysaccharide. Carbohydr Res 2000; 329:549-60. [PMID: 11128584 DOI: 10.1016/s0008-6215(00)00213-5] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Glycal esters of Kdo derivatives were converted into 2,3-anhydro intermediates, which were transformed into D-glycero-D-talo-oct-2-ulopyranosylonic acid (Ko), as well as 3-O- and 4-O-p-nitrobenzoyl-Ko derivatives. The exo-allyl orthoester derivative, methyl [5,7,8-tri-O-acetyl-4-O-(4-nitrobenzoyl)-2,3-O-[(1-exo-allyloxy)-ethylidene]-D-glycero-beta-D-talo-oct-2-ulopyranos]onate, prepared from the 4-O-pNBz-protected Ko derivative, was elaborated into the alpha-Ko allyl ketoside, the reducing disaccharide alpha-Kdop-(2-->4)-Ko and the disaccharide alpha-Kdop-(2-->4)-Kop-(2-->OAll). Conversely, methyl[4,5,7,8-tetra-O-acetyl-3-O-(4-nitrobenzoyl)-alpha-D-glycero-D-talo-2-octulopyranosyl bromide]onate [Carbohydr. Res., 244 (1993) 69-84], was coupled with a Kdo acceptor to give the disaccharide alpha-Kop-(2-->4)-Kdop-(2-->OAll) after orthoester rearrangement and deprotection. The allyl glycosides were treated with cysteamine and converted into neoglycoproteins. The ligands correspond to inner core units from Acinetobacter haemolyticus and Burkholderia cepacia lipopolysaccharides.
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Affiliation(s)
- N Wimmer
- Institute of Chemistry, University of Agricultural Sciences, Vienna, Austria
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16
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Synthetic approach to 3-deoxy-d-manno-oct-2-ulosonic acid (Kdo) α-disaccharides via a ketene dithioacetal. ACTA ACUST UNITED AC 2000. [DOI: 10.1016/s0957-4166(00)00371-2] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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17
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Reiner M, Schmidt RR. Synthesis of 3-deoxy-d-manno-2-octulosonic acid (Kdo) and d-glycero-d-talo-2-octulosonic acid (Ko) and their α-glycosides. ACTA ACUST UNITED AC 2000. [DOI: 10.1016/s0957-4166(99)00557-1] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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18
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Kirschning A, Jesberger M, Monenschein H. Application of polymer-supported electrophilic reagents for the 1,2-functionalization of glycals. Tetrahedron Lett 1999. [DOI: 10.1016/s0040-4039(99)01925-5] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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19
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Lafont D, Boullanger P, Rosenzweig M. Iodoacetoxylation Reaction: A Convenient Route to α-Glycosides in the 2-Iodo and 2-Deoxy Series. J Carbohydr Chem 1998. [DOI: 10.1080/07328309808002360] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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