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Quan LF, Chi YY, Dong YZ, Xu S, Chen BX, Li WJ. Identification and characterization of circadian clock genes in the head transcriptome of Conopomorpha sinensis Bradley. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY. PART D, GENOMICS & PROTEOMICS 2024; 50:101223. [PMID: 38432103 DOI: 10.1016/j.cbd.2024.101223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Revised: 02/17/2024] [Accepted: 02/26/2024] [Indexed: 03/05/2024]
Abstract
Conopomorpha sinensis Bradley is the most detrimental pest to litchi and longan in China. Adult eclosion, locomotion, mating and oviposition of C. sinensis usually occur at night, regulated by a circadian rhythm. Nevertheless, our understanding of the linkages between adult circadian rhythms and clock genes remains inadequate. To address this gap, transcriptomic analysis was conducted on female and male heads (including antennae) of C. sinensis using the Illumina HiSeq 6000 platform to identify major circadian clock-related genes. The annotated sequences were analyzed by BLASTx, and candidate clock genes were classified based on conservation, predicted domain architectures, and phylogenetic analysis. The analysis revealed a higher conservation of these genes among the compared moths. Further, the expression profile analysis showed a significant spatiotemporal and circadian rhythmic accumulation of some clock genes during development. The candidate clock genes were predominantly expressed in the head, highlighting their crucial function in circadian rhythm regulation. Moreover, CsinPer, CsinTim1, and CsinCry1 displayed similar dynamic expressions with a peak expression level in the 4th age adults, suggesting their involvement in regulation of courtship and mating behaviors. The CsinPer and CsinTim1 mRNA oscillated strongly with a similar phase, containing a peak expression just before the female mating peak. This work will greatly contribute to understanding the circadian clock system of C. sinensis and provide valuable information for further studies of the molecular mechanisms involved in rhythmicity in fruit-boring pests.
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Affiliation(s)
- Lin-Fa Quan
- Plant Protection Research Institute, Guangdong Academy of Agricultural Sciences, Key Laboratory of Green Prevention and Control on Fruits and Vegetables in South China Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of High Technology for Plant Protection, Guangzhou 510640, China
| | - Yan-Yan Chi
- Plant Protection Research Institute, Guangdong Academy of Agricultural Sciences, Key Laboratory of Green Prevention and Control on Fruits and Vegetables in South China Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of High Technology for Plant Protection, Guangzhou 510640, China
| | - Yi-Zhi Dong
- Plant Protection Research Institute, Guangdong Academy of Agricultural Sciences, Key Laboratory of Green Prevention and Control on Fruits and Vegetables in South China Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of High Technology for Plant Protection, Guangzhou 510640, China
| | - Shu Xu
- Plant Protection Research Institute, Guangdong Academy of Agricultural Sciences, Key Laboratory of Green Prevention and Control on Fruits and Vegetables in South China Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of High Technology for Plant Protection, Guangzhou 510640, China
| | - Bing-Xu Chen
- Plant Protection Research Institute, Guangdong Academy of Agricultural Sciences, Key Laboratory of Green Prevention and Control on Fruits and Vegetables in South China Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of High Technology for Plant Protection, Guangzhou 510640, China.
| | - Wen-Jing Li
- Plant Protection Research Institute, Guangdong Academy of Agricultural Sciences, Key Laboratory of Green Prevention and Control on Fruits and Vegetables in South China Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of High Technology for Plant Protection, Guangzhou 510640, China.
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Gao Y, Xu H, Jia B, Liu Y, Hassan A, Huang Q. Circadian Rhythms of Locomotor Activity Mediated by Cryptochrome 2 and Period 1 Genes in the Termites Reticulitermes chinensis and Odontotermes formosanus. INSECTS 2023; 15:1. [PMID: 38276815 PMCID: PMC10816429 DOI: 10.3390/insects15010001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 12/06/2023] [Accepted: 12/11/2023] [Indexed: 01/27/2024]
Abstract
Locomotor activity rhythms are crucial for foraging, mating and predator avoidance in insects. Although the circadian rhythms of activity have been studied in several termite species, the molecular mechanisms of circadian rhythms in termites are still unclear. In this study, we found that two termite species, R. chinensis and O. formosanus, exhibited clear circadian rhythms of locomotor activity in constant darkness along with rhythmically expressed core clock genes, Cry2 and Per1. The knockdown of Cry2 or Per1 expression in the two termite species disrupted the circadian rhythms of locomotor activity and markedly reduced locomotor activity in constant darkness, which demonstrates that Cry2 and Per1 can mediate the circadian rhythms of locomotor activity in termites in constant darkness. We suggest that locomotor activity in subterranean termites is controlled by the circadian clock.
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Affiliation(s)
- Yongyong Gao
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; (Y.G.); (H.X.); (B.J.); (Y.L.); (A.H.)
- Research and Development Centre of Ecological and Sustainable Application of Microbial Industry of the Loess Plateau in Shaanxi Province, College of Life Science, Yan’an University, Yan’an 716000, China
- Key Laboratory of Termite Control of Ministry of Water Resources, Huazhong Agricultural University, Wuhan 430070, China
| | - Huan Xu
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; (Y.G.); (H.X.); (B.J.); (Y.L.); (A.H.)
- Research and Development Centre of Ecological and Sustainable Application of Microbial Industry of the Loess Plateau in Shaanxi Province, College of Life Science, Yan’an University, Yan’an 716000, China
- Key Laboratory of Termite Control of Ministry of Water Resources, Huazhong Agricultural University, Wuhan 430070, China
| | - Bao Jia
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; (Y.G.); (H.X.); (B.J.); (Y.L.); (A.H.)
| | - Yutong Liu
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; (Y.G.); (H.X.); (B.J.); (Y.L.); (A.H.)
| | - Ali Hassan
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; (Y.G.); (H.X.); (B.J.); (Y.L.); (A.H.)
| | - Qiuying Huang
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; (Y.G.); (H.X.); (B.J.); (Y.L.); (A.H.)
- Key Laboratory of Termite Control of Ministry of Water Resources, Huazhong Agricultural University, Wuhan 430070, China
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Teng Z, Huo M, Zhou Y, Zhou Y, Liu Y, Lin Y, Zhang Q, Zhang Z, Wan F, Zhou H. Circadian Activity and Clock Genes in Pachycrepoideus vindemmiae: Implications for Field Applications and Circadian Clock Mechanisms of Parasitoid Wasps. INSECTS 2023; 14:insects14050486. [PMID: 37233114 DOI: 10.3390/insects14050486] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2023] [Revised: 05/10/2023] [Accepted: 05/11/2023] [Indexed: 05/27/2023]
Abstract
Despite the importance of circadian rhythms in insect behavior, our understanding of circadian activity and the molecular oscillatory mechanism in parasitoid wasp circadian clocks is limited. In this study, behavioral activities expected to be under the control of the endogenous circadian system were characterized in an ectoparasitoid wasp, Pachycrepoideus vindemmiae. Most adults exhibited emergence between late night and early morning, while mating only occurred during the daytime, with a peak at midday. Oviposition had three peaks in the early morning, late day, or early night and late night. Additionally, we identified eight putative clock genes from P. vindemmiae. The quantitative PCR (qPCR) results indicate that most clock genes showed significant rhythmic expressions. Our comparative analysis of clock genes in P. vindemmiae and 43 other parasitoid wasps revealed that none of the wasps possessed the timeless and cry1 genes commonly found in some other insect species, suggesting that the circadian clock system in parasitoid wasps is distinct from that in other non-Hymenoptera insects such as Drosophila. Thus, this study attempted to build the first hypothetical circadian clock model for a parasitoid wasp, thus generating hypotheses and providing a platform for the future functional characterization of P. vindemmiae clock genes as well as those of other parasitoid wasps. Finally, these findings on P. vindemmiae circadian activity will aid the development of effective field release programs for biological control, which can be tested under field conditions.
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Affiliation(s)
- Ziwen Teng
- Shandong Engineering Research Center for Environment-Friendly Agricultural Pest Management, Shandong Province Laboratory for Biological Invasions and Ecological Security, China-Australia Cooperative Research Center for Crop Health and Biological Invasions, College of Plant Health & Medicine, Qingdao Agricultural University, Qingdao 266109, China
| | - Mengran Huo
- Shandong Engineering Research Center for Environment-Friendly Agricultural Pest Management, Shandong Province Laboratory for Biological Invasions and Ecological Security, China-Australia Cooperative Research Center for Crop Health and Biological Invasions, College of Plant Health & Medicine, Qingdao Agricultural University, Qingdao 266109, China
| | - Yanan Zhou
- Shandong Engineering Research Center for Environment-Friendly Agricultural Pest Management, Shandong Province Laboratory for Biological Invasions and Ecological Security, China-Australia Cooperative Research Center for Crop Health and Biological Invasions, College of Plant Health & Medicine, Qingdao Agricultural University, Qingdao 266109, China
| | - Yuqi Zhou
- Shandong Engineering Research Center for Environment-Friendly Agricultural Pest Management, Shandong Province Laboratory for Biological Invasions and Ecological Security, China-Australia Cooperative Research Center for Crop Health and Biological Invasions, College of Plant Health & Medicine, Qingdao Agricultural University, Qingdao 266109, China
| | - Yunjie Liu
- Shandong Engineering Research Center for Environment-Friendly Agricultural Pest Management, Shandong Province Laboratory for Biological Invasions and Ecological Security, China-Australia Cooperative Research Center for Crop Health and Biological Invasions, College of Plant Health & Medicine, Qingdao Agricultural University, Qingdao 266109, China
| | - Yan Lin
- Shandong Engineering Research Center for Environment-Friendly Agricultural Pest Management, Shandong Province Laboratory for Biological Invasions and Ecological Security, China-Australia Cooperative Research Center for Crop Health and Biological Invasions, College of Plant Health & Medicine, Qingdao Agricultural University, Qingdao 266109, China
| | - Qi Zhang
- Shandong Engineering Research Center for Environment-Friendly Agricultural Pest Management, Shandong Province Laboratory for Biological Invasions and Ecological Security, China-Australia Cooperative Research Center for Crop Health and Biological Invasions, College of Plant Health & Medicine, Qingdao Agricultural University, Qingdao 266109, China
| | - Zhiqi Zhang
- Shandong Engineering Research Center for Environment-Friendly Agricultural Pest Management, Shandong Province Laboratory for Biological Invasions and Ecological Security, China-Australia Cooperative Research Center for Crop Health and Biological Invasions, College of Plant Health & Medicine, Qingdao Agricultural University, Qingdao 266109, China
| | - Fanghao Wan
- Shandong Engineering Research Center for Environment-Friendly Agricultural Pest Management, Shandong Province Laboratory for Biological Invasions and Ecological Security, China-Australia Cooperative Research Center for Crop Health and Biological Invasions, College of Plant Health & Medicine, Qingdao Agricultural University, Qingdao 266109, China
- Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China
| | - Hongxu Zhou
- Shandong Engineering Research Center for Environment-Friendly Agricultural Pest Management, Shandong Province Laboratory for Biological Invasions and Ecological Security, China-Australia Cooperative Research Center for Crop Health and Biological Invasions, College of Plant Health & Medicine, Qingdao Agricultural University, Qingdao 266109, China
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Lindestad O, Nylin S, Wheat CW, Gotthard K. Local adaptation of life cycles in a butterfly is associated with variation in several circadian clock genes. Mol Ecol 2021; 31:1461-1475. [PMID: 34931388 DOI: 10.1111/mec.16331] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Revised: 11/30/2021] [Accepted: 12/07/2021] [Indexed: 12/25/2022]
Abstract
Many insects exhibit geographical variation in voltinism, the number of generations produced per year. This includes high-latitude species in previously glaciated areas, meaning that divergent selection on life cycle traits has taken place during or shortly after recent colonization. Here, we use a population genomics approach to compare a set of nine Scandinavian populations of the butterfly Pararge aegeria that differ in life cycle traits (diapause thresholds and voltinism) along both north-south and east-west clines. Using a de novo-assembled genome, we reconstruct colonization histories and demographic relationships. Based on the inferred population structure, we then scan the genome for candidate loci showing signs of divergent selection potentially associated with population differences in life cycle traits. The identified candidate genes include a number of components of the insect circadian clock (timeless, timeless2, period, cryptochrome and clockwork orange). Most notably, the gene timeless, which has previously been experimentally linked to life cycle regulation in P. aegeria, is here found to contain a novel 97-amino acid deletion unique to, and fixed in, a single population. These results add to a growing body of research framing circadian gene variation as a potential mechanism for generating local adaptation of life cycles.
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Affiliation(s)
- Olle Lindestad
- Department of Zoology, Stockholm University, Stockholm, Sweden
| | - Sören Nylin
- Department of Zoology, Stockholm University, Stockholm, Sweden
| | | | - Karl Gotthard
- Department of Zoology, Stockholm University, Stockholm, Sweden
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