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Xuan Y, Yin M, Sun Y, Liu M, Bai G, Diao Z, Ma B. Magnetic nanoparticle-mediated enrichment technology combined with microfluidic single cell separation technology: A technology for efficient separation and degradation of functional bacteria in single cell liquid phase. BIORESOURCE TECHNOLOGY 2024; 401:130686. [PMID: 38599351 DOI: 10.1016/j.biortech.2024.130686] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2023] [Revised: 03/25/2024] [Accepted: 04/07/2024] [Indexed: 04/12/2024]
Abstract
Although there are many microorganisms in nature, the limitations of isolation and cultivation conditions have restricted the development of artificial enhanced remediation technology using functional microbial communities. In this study, an integrated technology of Magnetic Nanoparticle-mediated Enrichment (MME) and Microfluidic Single Cell separation (MSC) that breaks through the bottleneck of traditional separation and cultivation techniques and can efficiently obtain more in situ functional microorganisms from the environment was developed. MME technology was first used to enrich rapidly growing active bacteria in the environment. Subsequently, MSC technology was applied to isolate and incubate functional bacterial communities in situ and validate the degradation ability of individual bacteria. As a result, this study has changed the order of traditional pure culture methods, which are first selected and then cultured, and provided a new method for obtaining non-culturable functional microorganisms.
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Affiliation(s)
- Yuanyan Xuan
- College of Water Science, Beijing Normal University, Beijing 100875, China
| | - Meng Yin
- College of Water Science, Beijing Normal University, Beijing 100875, China
| | - Yujiao Sun
- College of Water Science, Beijing Normal University, Beijing 100875, China.
| | - Meijun Liu
- College of Water Science, Beijing Normal University, Beijing 100875, China
| | - Guomin Bai
- College of Water Science, Beijing Normal University, Beijing 100875, China
| | - Zhidian Diao
- Single-Cell Center, CAS Key Laboratory of Biofuels, Shandong Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Bo Ma
- Single-Cell Center, CAS Key Laboratory of Biofuels, Shandong Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China; University of Chinese Academy of Sciences, Beijing 100049, China
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Mendoza-Burguete Y, de la Luz Pérez-Rea M, Ledesma-García J, Campos-Guillén J, Ramos-López MA, Guzmán C, Rodríguez-Morales JA. Global Situation of Bioremediation of Leachate-Contaminated Soils by Treatment with Microorganisms: A Systematic Review. Microorganisms 2023; 11:microorganisms11040857. [PMID: 37110280 PMCID: PMC10145224 DOI: 10.3390/microorganisms11040857] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2023] [Revised: 03/17/2023] [Accepted: 03/18/2023] [Indexed: 03/30/2023] Open
Abstract
This systematic review presents the current state of research in the last five years on contaminants in soils, especially in leachates from solid waste landfills, with emphasis on biological remediation. In this work, the pollutants that can be treated by microorganisms and the results obtained worldwide were studied. All the data obtained were compiled, integrated, and analyzed by soil type, pollutant type, bacterial type, and the countries where these studies were carried out. This review provides reliable data on the contamination of soils worldwide, especially soils contaminated by leachate from municipal landfills. The extent of contamination, treatment objectives, site characteristics, cost, type of microorganisms to be used, and time must be considered when selecting a viable remediation strategy. The results of this study can help develop innovative and applicable methods for evaluating the overall contamination of soil with different contaminants and soil types. These findings can help develop innovative, applicable, and economically feasible methods for the sustainable management of contaminated soils, whether from landfill leachate or other soil types, to reduce or eliminate risk to the environment and human health, and to achieve greater greenery and functionality on the planet.
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So HL, Chu W. 1-Naphthol removal by Fenton-like heterogenous photocatalysis: Kinetic modelling, optimization, and prediction by response surface methodology. CHEMICAL ENGINEERING JOURNAL ADVANCES 2022. [DOI: 10.1016/j.ceja.2022.100395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
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Zhang X, Zhu R, Li W, Ma J, Lin H. Genomic insights into the antibiotic resistance pattern of the tetracycline-degrading bacterium, Arthrobacter nicotianae OTC-16. Sci Rep 2021; 11:15638. [PMID: 34341372 PMCID: PMC8329189 DOI: 10.1038/s41598-021-94840-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Accepted: 07/14/2021] [Indexed: 11/09/2022] Open
Abstract
Although many bacteria have the potential to remove antibiotic residues from environmental niches, the benefits of using antibiotic-degrading bacteria to manage antibiotic pollution should be assessed against the risk of the potential expansion of antimicrobial resistance. This study investigated the antibiotic resistance pattern of the bacterium Arthrobacter nicotianae OTC-16, which shows substantial biodegradation of oxytetracycline (OTC)/tetracycline. The results showed that this strain could be resistant to at least seven categories of 15 antibiotics, based on antimicrobial susceptibility testing. The genome of A. nicotianae OTC-16 contains one chromosome (3,643,989 bp) and two plasmids (plasmid1, 123,894 bp and plasmid2, 29,841 bp). Of the 3,561 genes isolated, eight were related to antibiotic resistance. During OTC degradation by the strain OTC-16, the expression of ant2ia, sul1, tet33, and cml_e8 in the plasmid, and one gene (tetV) in the chromosome were tracked using real-time quantitative reverse transcription-polymerase chain reaction (qRT-PCR). Only the plasmid-derived resistance genes were up-regulated in the presence of OTC. The presence of OTC increased the tolerance of strain OTC-16 to streptomycin sulphate. The findings of this study can help deepen our understanding of the behavioural characteristics of resistance genes and adaptive evolution of drug-resistant bacteria.
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Affiliation(s)
- Xin Zhang
- College of Forest and Biotechnology, Zhejiang A & F University, Hangzhou, 311300, China.
| | - Rongrong Zhu
- College of Forest and Biotechnology, Zhejiang A & F University, Hangzhou, 311300, China
- The Institute of Environment, Resources, Soil and Fertilizers, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China
| | - Weilin Li
- College of Forest and Biotechnology, Zhejiang A & F University, Hangzhou, 311300, China
- The Institute of Environment, Resources, Soil and Fertilizers, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China
| | - Junwei Ma
- The Institute of Environment, Resources, Soil and Fertilizers, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China
| | - Hui Lin
- The Institute of Environment, Resources, Soil and Fertilizers, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China.
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Shi Y, Lin H, Ma J, Zhu R, Sun W, Lin X, Zhang J, Zheng H, Zhang X. Degradation of tetracycline antibiotics by Arthrobacter nicotianae OTC-16. JOURNAL OF HAZARDOUS MATERIALS 2021; 403:123996. [PMID: 33265032 DOI: 10.1016/j.jhazmat.2020.123996] [Citation(s) in RCA: 51] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2020] [Revised: 08/04/2020] [Accepted: 09/12/2020] [Indexed: 06/12/2023]
Abstract
Microbial degradation is an important option for combating antibiotic pollution. Arthrobacter nicotianae OTC-16 was isolated as a novel tetracycline-degrading bacterium, which could degrade oxytetracycline/tetracycline (OTC/TET). Toxicity assessment indicated that this bacterium effectively converted OTC into byproducts with less toxicity to bacterial and algal indicators. Six degradation products of OTC were tentatively identified, and a potential biotransformation pathway was proposed that includes decarbonylation, reduction, and dehydration. Bioaugmentation of TC removal with this bacterium was further studied in various matrices. In aqueous media, strain OTC-16 accelerated OTC removal over a temperature range of 20-35 ℃, pH range of 6.0-9.0, and OTC concentration range of 25-150 mg L-1. The strain also facilitated the decrease of OTC and TET concentrations in both swine and chicken manures, with a maximum decrease of 91.54%, and increased the degradation of OTC in soils by 8.22-45.45%. A unique advantage of this bacterium in promoting OTC degradation in alkaline environments was demonstrated, where it successfully competed with the indigenous microbiota and largely decreased the relative abundances of the studied tetracycline resistance genes (tetB and tetW) in soil. This work offers a better understanding of the antibiotic bioaugmentation and new microbial sources.
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Affiliation(s)
- Yanke Shi
- College of Forest and Biotechnology, Zhejiang A & F University, Hangzhou 311300, China; The Institute of Environment, Resources, Soil and Fertilizers, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China.
| | - Hui Lin
- The Institute of Environment, Resources, Soil and Fertilizers, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China.
| | - Junwei Ma
- The Institute of Environment, Resources, Soil and Fertilizers, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China.
| | - Rongrong Zhu
- College of Forest and Biotechnology, Zhejiang A & F University, Hangzhou 311300, China; The Institute of Environment, Resources, Soil and Fertilizers, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China.
| | - Wanchun Sun
- The Institute of Environment, Resources, Soil and Fertilizers, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China.
| | - Xiaoyan Lin
- China National Rice Research Institute, Hangzhou 310006, China.
| | - Jin Zhang
- The Institute of Environment, Resources, Soil and Fertilizers, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China.
| | - Huabao Zheng
- College of Environmental and Resource Sciences, State Key Laboratory of Subtropical Silviculture, Zhejiang A & F University, Hangzhou 311300, China.
| | - Xin Zhang
- College of Forest and Biotechnology, Zhejiang A & F University, Hangzhou 311300, China.
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