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Khan AR, Bhatti SA, Tawfiq F, Siddiqui MK, Hussain S, Ali MA. On degree-based operators and topological descriptors of molecular graphs and their applications to QSPR analysis of carbon derivatives. Sci Rep 2024; 14:21543. [PMID: 39278960 PMCID: PMC11403011 DOI: 10.1038/s41598-024-72621-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2024] [Accepted: 09/09/2024] [Indexed: 09/18/2024] Open
Abstract
This work initiates a concept of reduced reverse degree basedRR D M -Polynomial for a graph, and differential and integral operators by using thisRR D M -Polynomial. In this study twelve reduced reverse degree-based topological descriptors are formulated using theRR D M -Polynomial. The topological descriptors, denoted as T D 's, are numerical invariants that offer significant insights into the molecular topology of a molecular graph. These descriptors are essential for conducting QSPR investigations and accurately estimating physicochemical attributes. The structural and algebraic characteristics of the graphene and graphdiyne are studied to apply this methodology. The study involves the analysis and estimation of Reduced reverse degree-based topological descriptors and physicochemical features of graphene derivatives using best-fit quadratic regression models. This work opens up new directions for scientists and researchers to pursue, taking them into new fields of study.
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Affiliation(s)
- Abdul Rauf Khan
- Department of Mathematics, Faculty of Sciences, Ghazi University, Dera Ghazi Khan, 32200, Pakistan
| | - Saad Amin Bhatti
- Department of Mathematics, Faculty of Sciences, Ghazi University, Dera Ghazi Khan, 32200, Pakistan
| | - Ferdous Tawfiq
- Mathematics Department, College of Science, King Saud University, P.O. Box 22452, Riyadh, 11495, Saudi Arabia
| | | | - Shahid Hussain
- Energy Engineering Division, Department of Engineering Science and Mathematics, Lulea University of Technology, Lulea, Sweden
| | - Mustafa Ahmed Ali
- Department of Mathematics, Faculty of Science, Somali National University, Mogadishu, Somalia.
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Gunasekar T, Kathavarayan P, Alsinai A, Murugan G. On Certain Degree Based and Bond-additive Topological Indices of Dodeca-benzo-circumcorenene. Comb Chem High Throughput Screen 2024; 27:1629-1641. [PMID: 38213147 DOI: 10.2174/0113862073274943231211110011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Revised: 11/13/2023] [Accepted: 11/16/2023] [Indexed: 01/13/2024]
Abstract
BACKGROUND Chemical graph theory has been used to mathematically model the various physical and biological aspects of chemical substances. A mathematical formulation that may be applied to any graph and can characterise a molecule structure is known as a topological index or molecular descriptor. METHOD It is convenient and efficient to analyse the mathematical values and further research on various physical properties of a molecule based on these molecular descriptors. They provide useful alternatives to lengthy, expensive, and labour-intensive laboratory experiments. The topological indices can be used to predict the chemical structures, physicochemical properties, and biological activities using quantitative structure-activity relationships (QSARs) and quantitative structure-property relationships (QSPRs). RESULT In this study, the molecular descriptors of the Dodeca-benzo-circumcorenene compounds are derived based on their corresponding molecular structures. CONCLUSION The computed indices are then compared graphically to study their relationship with the molecular structure and with each other..
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Affiliation(s)
- Tharmalingam Gunasekar
- Department of Mathematics, Vel Tech Rangarajan Dr. Sagunthala R & D Institute of Science and Technology, Chennai, 600062, Tamil Nadu, India
| | - Ponnusamy Kathavarayan
- Department of Mathematics, Vel Tech Rangarajan Dr. Sagunthala R & D Institute of Science and Technology, Chennai, 600062, Tamil Nadu, India
- Department of Mathematics, Chennai Institute of Technology (Autonomous), Chennai, 600069, Tamil Nadu, India
| | - Ammar Alsinai
- Department of Mathematics, University of Mysore, Mysore, India
| | - Govindhan Murugan
- Department of Mathematics, Chennai Institute of Technology (Autonomous), Chennai, 600069, Tamil Nadu, India
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Arockiaraj M, Fiona JC, Kavitha SRJ, Shalini AJ, Balasubramanian K. Topological and Spectral Properties of Wavy Zigzag Nanoribbons. MOLECULES (BASEL, SWITZERLAND) 2022; 28:molecules28010152. [PMID: 36615349 PMCID: PMC9822221 DOI: 10.3390/molecules28010152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/22/2022] [Revised: 12/07/2022] [Accepted: 12/19/2022] [Indexed: 12/28/2022]
Abstract
Low-dimensional graphene-based nanomaterials are interesting due to their cutting-edge electronic and magnetic properties. Their large surface area, strong mechanical resistance, and electronic properties have enabled potential pharmaceutical and opto-electronic applications. Graphene nanoribbons (GNRs) are graphene strips of nanometer size possessing zigzag and armchair edge geometries with tunable widths. Despite the recent developments in the characterization, design and synthesis of GNRs, the study of electronic, magnetic and topological properties, GNRs continue to pose a challenge owing to their multidimensionality. In this study, we obtain the topological and electronic properties of a series of wave-like nanoribbons comprising nanographene units with zigzag-shaped edges. The edge partition techniques based on the convex components are employed to compute the mathematical formulae of molecular descriptors for the wave-like zigzag GNRs. We have also obtained the spectral and energetic properties including HOMO-LUMO gaps, bond delocalization energies, resonance energies, 13C NMR and ESR patterns for the GNRs. All of these computations reveal zero to very low HOMO-LUMO gaps that make these nanoribbons potential candidates for topological spintronics.
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Affiliation(s)
| | - J. Celin Fiona
- Department of Mathematics, Loyola College, Chennai 600034, India
| | | | - Arul Jeya Shalini
- Department of Mathematics, Women’s Christian College, Chennai 600006, India
| | - Krishnan Balasubramanian
- School of Molecular Sciences, Arizona State University, Tempe, AZ 85287-1604, USA
- Correspondence:
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Mushtaq S, Arockiaraj M, Fiona JC, Jency J, Balasubramanian K. Topological properties, entropies, stabilities and spectra of armchair versus zigzag coronene-like nanoribbons. Mol Phys 2022. [DOI: 10.1080/00268976.2022.2108518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
Affiliation(s)
| | | | - J. Celin Fiona
- Department of Mathematics, Loyola College, Chennai, India
| | - Joseph Jency
- Department of Mathematics, Loyola College, Chennai, India
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Rahul M, Clement J, Singh Junias J, Arockiaraj M, Balasubramanian K. Degree-based entropies of graphene, graphyne and graphdiyne using Shannon’s approach. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132797] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Symmetry and Combinatorial Concepts for Cyclopolyarenes, Nanotubes and 2D-Sheets: Enumerations, Isomers, Structures Spectra & Properties. Symmetry (Basel) 2021. [DOI: 10.3390/sym14010034] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Abstract
This review article highlights recent developments in symmetry, combinatorics, topology, entropy, chirality, spectroscopy and thermochemistry pertinent to 2D and 1D nanomaterials such as circumscribed-cyclopolyarenes and their heterocyclic analogs, carbon and heteronanotubes and heteronano wires, as well as tessellations of cyclopolyarenes, for example, kekulenes, septulenes and octulenes. We establish that the generalization of Sheehan’s modification of Pólya’s theorem to all irreducible representations of point groups yields robust generating functions for the enumeration of chiral, achiral, position isomers, NMR, multiple quantum NMR and ESR hyperfine patterns. We also show distance, degree and graph entropy based topological measures combined with techniques for distance degree vector sequences, edge and vertex partitions of nanomaterials yield robust and powerful techniques for thermochemistry, bond energies and spectroscopic computations of these species. We have demonstrated the existence of isentropic tessellations of kekulenes which were further studied using combinatorial, topological and spectral techniques. The combinatorial generating functions obtained not only enumerate the chiral and achiral isomers but also aid in the machine construction of various spectroscopic and ESR hyperfine patterns of the nanomaterials that were considered in this review. Combinatorial and topological tools can become an integral part of robust machine learning techniques for rapid computation of the combinatorial library of isomers and their properties of nanomaterials. Future applications to metal organic frameworks and fullerene polymers are pointed out.
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Gayathri V, Muthucumaraswamy R, Prabhu S, Farahani M. Omega, Theta, PI, Sadhana polynomials, and subsequent indices of convex benzenoid system. COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2021.113310] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Guo Z, Chakraborty S, Monikh FA, Varsou DD, Chetwynd AJ, Afantitis A, Lynch I, Zhang P. Surface Functionalization of Graphene-Based Materials: Biological Behavior, Toxicology, and Safe-By-Design Aspects. Adv Biol (Weinh) 2021; 5:e2100637. [PMID: 34288601 DOI: 10.1002/adbi.202100637] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2021] [Revised: 06/11/2021] [Indexed: 01/08/2023]
Abstract
The increasing exploitation of graphene-based materials (GBMs) is driven by their unique properties and structures, which ignite the imagination of scientists and engineers. At the same time, the very properties that make them so useful for applications lead to growing concerns regarding their potential impacts on human health and the environment. Since GBMs are inert to reaction, various attempts of surface functionalization are made to make them reactive. Herein, surface functionalization of GBMs, including those intentionally designed for specific applications, as well as those unintentionally acquired (e.g., protein corona formation) from the environment and biota, are reviewed through the lenses of nanotoxicity and design of safe materials (safe-by-design). Uptake and toxicity of functionalized GBMs and the underlying mechanisms are discussed and linked with the surface functionalization. Computational tools that can predict the interaction of GBMs behavior with their toxicity are discussed. A concise framing of current knowledge and key features of GBMs to be controlled for safe and sustainable applications are provided for the community.
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Affiliation(s)
- Zhiling Guo
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK
| | - Swaroop Chakraborty
- Department of Biological Engineering, Indian Institute of Technology, Gandhinagar, Gujarat, 382355, India
| | - Fazel Abdolahpur Monikh
- Department of Environmental & Biological Sciences, University of Eastern Finland, P.O. Box 111, Joensuu, FI-80101, Finland
| | - Dimitra-Danai Varsou
- School of Chemical Engineering, National Technical University of Athens, Athens, 15780, Greece
| | - Andrew J Chetwynd
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK
| | - Antreas Afantitis
- Department of ChemoInformatics, NovaMechanics Ltd., Nicosia, 1046, Cyprus
| | - Iseult Lynch
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK
| | - Peng Zhang
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK
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Topological characterization of hexagonal and rectangular tessellations of kekulenes as traps for toxic heavy metal ions. Theor Chem Acc 2021. [DOI: 10.1007/s00214-021-02733-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Arockiaraj M, Liu JB, Arulperumjothi M, Prabhu S. On Certain Topological Indices of Three-Layered Single-Walled Titania Nanosheets. Comb Chem High Throughput Screen 2020; 25:483-495. [PMID: 33109055 DOI: 10.2174/1386207323666201012143430] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2020] [Revised: 07/30/2020] [Accepted: 08/08/2020] [Indexed: 11/22/2022]
Abstract
AIM AND OBJECTIVE Nanostructures are objects whose sizes are between microscopic and molecular. The most significant of these new elements are carbon nanotubes. These elements have extraordinary microelectronic properties and many other exclusive physiognomies. Recently, researchers have given the attention to the mathematical properties of these materials. The aim and objective of this research article is to investigate the most important molecular descriptors namely Wiener, edge-Wiener, vertex-edge-Wiener, vertex-Szeged, edge-Szeged, edge-vertex-Szeged, total-Szeged, PI, Schultz, Gutman, Mostar, edge-Mostar, and total-Mostar indices of three-layered single-walled titania nanosheets. By computing these topological indices, materials science researchers can have a better understanding of structural and physical properties of titania nanosheets, and thereby more easily synthesizing new variants of titania nanosheets with more amenable physicochemical properties. METHODS The cut method turned out to be extremely handy when dealing with distance-based graph invariants which are in turn among the central concepts of chemical graph theory. In this method, we use the Djokovic ́-Winkler relation to find the suitable edge cuts to leave the graph into exactly two components. Based on the graph theoretical measures of the components, we obtain the desired topological indices by mathematical computations. RESULTS In this paper, distance-based indices for three-layered single-walled titania nanosheets were investigated and given the exact expressions for various dimensions of three-layered single-walled titania nanosheets. These indices may be useful in synthesizing new variants of titania nanosheets and the computed topological indices play an important role in studies of Quantitative structure-activity relationship (QSAR) and Quantitative structure-property relationship (QSPR). CONCLUSION In this paper, we have obtained the closed expressions of several distance-based topological indices of three-layered single-walled titania nanosheet TNS_3 [m,n] molecular graph for the cases m≥ n and m < n. The graphical validations for the computed indices are done and we observe that the Wiener types, Schultz and Gutman indices perform in a similar way whereas PI and Mostar type indices perform in the same way.
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Affiliation(s)
| | - Jia-Bao Liu
- School of Mathematics and Physics, Anhui Jianzhu University, Hefei 230601. China
| | - M Arulperumjothi
- Department of Mathematics, Loyola College, University of Madras, Chennai 600034. India
| | - S Prabhu
- Department of Mathematics, Sri Venkateshwara College of Engineering, Sriperumbudur. India
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Julietraja K, Venugopal P. Computation of Degree-Based Topological Descriptors Using M-Polynomial for Coronoid Systems. Polycycl Aromat Compd 2020. [DOI: 10.1080/10406638.2020.1804415] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- K. Julietraja
- Department of Mathematics, Sri Sivasubramaniya Nadar College of Engineering, Kalavakkam, India
| | - P. Venugopal
- Department of Mathematics, Sri Sivasubramaniya Nadar College of Engineering, Kalavakkam, India
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