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For: Sun H, Gibb CLD, Gibb BC. Calorimetric Analysis of the 1:1 Complexes Formed between a Water-soluble Deep-cavity Cavitand, and Cyclic and Acyclic Carboxylic Acids. Supramol Chem 2008. [DOI: 10.1080/10610270701744302] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Number Cited by Other Article(s)
1
Samanta S, Baldridge A, Tolbert LM, Ramamurthy V. Guest/Host Complexes of Octa Acid and Amphiphilic Benzylidene-3-methylimidazolidinones Exchange Hosts within the NMR Time Scale. ACS OMEGA 2020;5:8230-8241. [PMID: 32309733 PMCID: PMC7161058 DOI: 10.1021/acsomega.0c00523] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Accepted: 03/19/2020] [Indexed: 06/11/2023]
2
Wei X, Raj AM, Ji J, Wu W, Veerakanellore GB, Yang C, Ramamurthy V. Reversal of Regioselectivity during Photodimerization of 2-Anthracenecarboxylic Acid in a Water-Soluble Organic Cavitand. Org Lett 2019;21:7868-7872. [DOI: 10.1021/acs.orglett.9b02860] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
3
Caldararu O, Olsson MA, Misini Ignjatović M, Wang M, Ryde U. Binding free energies in the SAMPL6 octa-acid host-guest challenge calculated with MM and QM methods. J Comput Aided Mol Des 2018;32:1027-1046. [PMID: 30203229 DOI: 10.1007/s10822-018-0158-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2018] [Accepted: 08/31/2018] [Indexed: 01/15/2023]
4
Yin J, Henriksen NM, Muddana HS, Gilson MK. Bind3P: Optimization of a Water Model Based on Host-Guest Binding Data. J Chem Theory Comput 2018;14:3621-3632. [PMID: 29874074 DOI: 10.1021/acs.jctc.8b00318] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
5
Reversible photoswitching of encapsulated azobenzenes in water. Proc Natl Acad Sci U S A 2018;115:9379-9384. [PMID: 29717041 DOI: 10.1073/pnas.1712787115] [Citation(s) in RCA: 87] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
6
Sullivan MR, Yao W, Tang D, Ashbaugh HS, Gibb BC. The Thermodynamics of Anion Complexation to Nonpolar Pockets. J Phys Chem B 2018;122:1702-1713. [PMID: 29373793 PMCID: PMC10668596 DOI: 10.1021/acs.jpcb.7b12259] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
7
Choudhury R, Ramamurthy V. Understanding the complexation of aliphatic and aromatic acids guests with octa acid. J PHYS ORG CHEM 2017. [DOI: 10.1002/poc.3795] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
8
Jagadesan P, Samanta SR, Choudhury R, Ramamurthy V. Container Chemistry: Manipulating excited state behavior of organic guests within cavitands that form capsules in water. J PHYS ORG CHEM 2017. [DOI: 10.1002/poc.3728] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
9
Thomas SS, Tang H, Gaudes A, Baggesen SB, Gibb CLD, Gibb BC, Bohne C. Tuning the Binding Dynamics of a Guest-Octaacid Capsule through Noncovalent Anchoring. J Phys Chem Lett 2017;8:2573-2578. [PMID: 28535054 PMCID: PMC5574188 DOI: 10.1021/acs.jpclett.7b00917] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
10
Mobley DL, Gilson MK. Predicting Binding Free Energies: Frontiers and Benchmarks. Annu Rev Biophys 2017;46:531-558. [PMID: 28399632 PMCID: PMC5544526 DOI: 10.1146/annurev-biophys-070816-033654] [Citation(s) in RCA: 234] [Impact Index Per Article: 33.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
11
Olsson MA, Ryde U. Comparison of QM/MM Methods To Obtain Ligand-Binding Free Energies. J Chem Theory Comput 2017;13:2245-2253. [DOI: 10.1021/acs.jctc.6b01217] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
12
Caldararu O, Olsson MA, Riplinger C, Neese F, Ryde U. Binding free energies in the SAMPL5 octa-acid host-guest challenge calculated with DFT-D3 and CCSD(T). J Comput Aided Mol Des 2017;31:87-106. [PMID: 27600554 PMCID: PMC5239813 DOI: 10.1007/s10822-016-9957-5] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2016] [Accepted: 08/25/2016] [Indexed: 10/27/2022]
13
Binding of carboxylate and trimethylammonium salts to octa-acid and TEMOA deep-cavity cavitands. J Comput Aided Mol Des 2016;31:21-28. [PMID: 27432339 DOI: 10.1007/s10822-016-9925-0] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2016] [Accepted: 07/11/2016] [Indexed: 10/21/2022]
14
Mosca S, Yu Y, Rebek J. Preparative scale and convenient synthesis of a water-soluble, deep cavitand. Nat Protoc 2016;11:1371-87. [PMID: 27388554 DOI: 10.1038/nprot.2016.078] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
15
Gibb BC. From steroids to aqueous supramolecular chemistry: an autobiographical career review. Beilstein J Org Chem 2016;12:684-701. [PMID: 27340461 PMCID: PMC4902062 DOI: 10.3762/bjoc.12.69] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2016] [Accepted: 03/30/2016] [Indexed: 01/12/2023]  Open
16
Wang K, Sokkalingam P, Gibb BC. ITC and NMR Analysis of the Encapsulation of Fatty Acids within a Water-Soluble Cavitand and its Dimeric Capsule. Supramol Chem 2015;28:84-90. [PMID: 26997853 DOI: 10.1080/10610278.2015.1082563] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
17
Jordan JH, Gibb BC. Molecular containers assembled through the hydrophobic effect. Chem Soc Rev 2015;44:547-85. [PMID: 25088697 DOI: 10.1039/c4cs00191e] [Citation(s) in RCA: 238] [Impact Index Per Article: 26.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
18
Gibb CLD, Oertling EE, Velaga S, Gibb BC. Thermodynamic Profiles of Salt Effects on a Host–Guest System: New Insight into the Hofmeister Effect. J Phys Chem B 2015;119:5624-38. [DOI: 10.1021/acs.jpcb.5b01708] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
19
BEDAM binding free energy predictions for the SAMPL4 octa-acid host challenge. J Comput Aided Mol Des 2015;29:315-25. [PMID: 25726024 DOI: 10.1007/s10822-014-9795-2] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2014] [Accepted: 09/05/2014] [Indexed: 12/14/2022]
20
Sullivan MR, Gibb BC. Differentiation of small alkane and alkyl halide constitutional isomers via encapsulation. Org Biomol Chem 2015;13:1869-77. [PMID: 25504155 DOI: 10.1039/c4ob02357a] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
21
Wanjari PP, Gibb BC, Ashbaugh HS. Simulation optimization of spherical non-polar guest recognition by deep-cavity cavitands. J Chem Phys 2014;139:234502. [PMID: 24359375 DOI: 10.1063/1.4844215] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
22
Mikulskis P, Cioloboc D, Andrejić M, Khare S, Brorsson J, Genheden S, Mata RA, Söderhjelm P, Ryde U. Free-energy perturbation and quantum mechanical study of SAMPL4 octa-acid host–guest binding energies. J Comput Aided Mol Des 2014;28:375-400. [DOI: 10.1007/s10822-014-9739-x] [Citation(s) in RCA: 65] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2013] [Accepted: 02/24/2014] [Indexed: 01/09/2023]
23
Converging free energies of binding in cucurbit[7]uril and octa-acid host-guest systems from SAMPL4 using expanded ensemble simulations. J Comput Aided Mol Des 2014;28:401-15. [PMID: 24610238 DOI: 10.1007/s10822-014-9716-4] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2013] [Accepted: 01/21/2014] [Indexed: 10/25/2022]
24
Exhaustive docking and solvated interaction energy scoring: lessons learned from the SAMPL4 challenge. J Comput Aided Mol Des 2014;28:417-27. [PMID: 24474162 DOI: 10.1007/s10822-014-9715-5] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2013] [Accepted: 01/16/2014] [Indexed: 10/25/2022]
25
Gibb CLD, Gibb BC. Binding of cyclic carboxylates to octa-acid deep-cavity cavitand. J Comput Aided Mol Des 2013;28:319-25. [PMID: 24218290 DOI: 10.1007/s10822-013-9690-2] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2013] [Accepted: 11/05/2013] [Indexed: 11/26/2022]
26
Liu S, Russell DH, Zinnel NF, Gibb BC. Guest packing motifs within a supramolecular nanocapsule and a covalent analogue. J Am Chem Soc 2013;135:4314-24. [PMID: 23448338 DOI: 10.1021/ja310741q] [Citation(s) in RCA: 82] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
27
Lin Z, Sun J, Efremovska B, Warmuth R. Assembly of Water-Soluble, Dynamic, Covalent Container Molecules and Their Application in the Room-Temperature Stabilization of Protoadamantene. Chemistry 2012;18:12864-72. [DOI: 10.1002/chem.201200602] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2012] [Indexed: 11/07/2022]
28
Geer MF, Shimizu LS. Self-Assembly and Self-Organization. Supramol Chem 2012. [DOI: 10.1002/9780470661345.smc012] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
29
Brégier F, Karuppannan S, Chambron JC. A Hybrid Cavitand Made by Capping Permethylated α-Cyclodextrin with Cyclotriveratrylene. European J Org Chem 2012. [DOI: 10.1002/ejoc.201101604] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
30
Gibb CLD, Gibb BC. Anion binding to hydrophobic concavity is central to the salting-in effects of Hofmeister chaotropes. J Am Chem Soc 2011;133:7344-7. [PMID: 21524086 DOI: 10.1021/ja202308n] [Citation(s) in RCA: 138] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
31
Synthesis and inclusion properties study of some mono 6-amino β-cyclodextrin dimers bridged by N,N-succinyldiamide linkers. J INCL PHENOM MACRO 2011. [DOI: 10.1007/s10847-010-9816-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
32
Laughrey Z, Gibb BC. Water-soluble, self-assembling container molecules: an update. Chem Soc Rev 2011;40:363-86. [DOI: 10.1039/c0cs00030b] [Citation(s) in RCA: 145] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
33
Jayaraj N, Zhao Y, Parthasarathy A, Porel M, Liu RSH, Ramamurthy V. Nature of supramolecular complexes controlled by the structure of the guest molecules: formation of octa acid based capsuleplex and cavitandplex. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2009;25:10575-10586. [PMID: 19496576 DOI: 10.1021/la901367k] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
34
Water-soluble octahedral polyammonium nanocapsules: synthesis and encapsulation studies. Tetrahedron 2009. [DOI: 10.1016/j.tet.2009.06.056] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
35
Giles MD, Liu S, Emanuel RL, Gibb BC, Grayson SM. Dendronized supramolecular nanocapsules: pH independent, water-soluble, deep-cavity cavitands assemble via the hydrophobic effect. J Am Chem Soc 2008;130:14430-1. [PMID: 18847205 PMCID: PMC2744078 DOI: 10.1021/ja806457x] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
36
Ewell J, Gibb BC, Rick SW. Water inside a hydrophobic cavitand molecule. J Phys Chem B 2008;112:10272-9. [PMID: 18661937 DOI: 10.1021/jp804429n] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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