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Ozyilmaz E, Kocer MB, Caglar O, Yildirim A, Yilmaz M. Surfactant-based metal-organic frameworks (MOFs) in the preparation of an active biocatalysis. J Biotechnol 2023:S0168-1656(23)00116-5. [PMID: 37301292 DOI: 10.1016/j.jbiotec.2023.06.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Revised: 06/02/2023] [Accepted: 06/03/2023] [Indexed: 06/12/2023]
Abstract
Metal-organic frameworks (MOFs) are used as ideal support materials thanks to their unique properties and have become the focus of interest in enzyme immobilization studies, especially in recent years. In order to increase the catalytic activity and stability of Candida rugosa lipase (CRL), a new fluorescence-based MOF (UiO-66-Nap) derived from UiO-66 was synthesized. The structures of the materials were confirmed by spectroscopic techniques such as FTIR, 1H NMR, SEM, and PXRD. CRL was immobilized on UiO-66-NH2 and UiO-66-Nap by adsorption technique and immobilization and stability parameters of UiO-66-Nap@CRL were examined. Immobilized lipases UiO-66-Nap@CRL exhibited higher catalytic activity (204 U/g) than UiO-66-NH2@CRL (168 U/g), which indicates that the immobilized lipase (UiO-66-Nap@CRL) carries sulfonate groups, this is due to strong ionic interactions between the surfactant's polar groups and certain charged locations on the protein surface. The Free CRL lost its catalytic activity completely at 60 °C after 100min, while UiO-66-NH2@CRL and UiO-66-Nap@CRL retained 45% and 56% of their catalytic activity at the end of 120min, respectively. After 5 cycles, the activity of UiO-66-Nap@CRL remained 50%, while the activity of UiO-66-NH2@CRL was about 40%. This difference is due to the surfactant groups (Nap) in UiO-66-Nap@CRL. These results show that the newly synthesized fluorescence-based MOF derivative (UiO-66-Nap) can be an ideal support material for enzyme immobilization and can be used successfully to protect and increase the activities of enzymes.
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Affiliation(s)
- Elif Ozyilmaz
- Selcuk University, Faculty of Science, Department of Biochemistry, Konya, Turkey.
| | - Mustafa Baris Kocer
- Selcuk University, Faculty of Science, Department of Chemistry, Konya, Turkey
| | - Ozge Caglar
- Selcuk University, Faculty of Science, Department of Biochemistry, Konya, Turkey; Selcuk University, Institute of Sciences, Konya, Turkey
| | - Ayse Yildirim
- Selcuk University, Faculty of Science, Department of Chemistry, Konya, Turkey; Selcuk University, Institute of Sciences, Konya, Turkey
| | - Mustafa Yilmaz
- Selcuk University, Faculty of Science, Department of Chemistry, Konya, Turkey
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Aggarwal S, Ikram S. A comprehensive review on bio-mimicked multimolecular frameworks and supramolecules as scaffolds for enzyme immobilization. Biotechnol Bioeng 2023; 120:352-398. [PMID: 36349456 DOI: 10.1002/bit.28282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Revised: 10/30/2022] [Accepted: 11/05/2022] [Indexed: 11/10/2022]
Abstract
Immobilization depicts a propitious route to optimize the catalytic performances, efficient recovery, minimizing autocatalysis, and also augment the stabilities of enzymes, particularly in unnatural environments. In this opinion, supramolecules and multimolecular frameworks have captivated immense attention to achieve profound controllable interactions between enzyme molecules and well-defined natural or synthetic architectures to yield protein bioconjugates with high accessibility for substrate binding and enhanced enantioselectivities. This scholastic review emphasizes the possibilities of associating multimolecular complexes with biological entities via several types of interactions, namely covalent interactions, host-guest complexation, π - π ${\rm{\pi }}-{\rm{\pi }}$ interactions, intra/inter hydrogen bondings, electrostatic interactions, and so forth offers remarkable applications for the modulations of enzymes. The potential synergies between artificial supramolecular structures and biological systems are the primary concern of this pedagogical review. The majority of the research primarily focused on the dynamic biomolecule-responsive supramolecular assemblages and multimolecular architectures as ideal platforms for the recognition and modulation of proteins and cells. Embracing sustainable green demeanors of enzyme immobilizations in a quest to reinforce site-selectivity, catalytic efficiency, and structural integrality of enzymes are the contemporary requirements of the biotechnological sectors that instigate the development of novel biocatalytic systems.
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Affiliation(s)
- Shalu Aggarwal
- Bio/Polymers Research Laboratory, Department of Chemistry, Faculty of Natural Sciences, Jamia Millia Islamia, New Delhi, India
| | - Saiqa Ikram
- Bio/Polymers Research Laboratory, Department of Chemistry, Faculty of Natural Sciences, Jamia Millia Islamia, New Delhi, India
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Hu R, Niu Z, Lu Y, Zhu H, Mao Z, Yan K, Hu X, Chen H. Immobilization for Lipase: Enhanced Activity and Stability by Flexible Combination and Solid Support. Appl Biochem Biotechnol 2022; 194:5963-5976. [DOI: 10.1007/s12010-022-04026-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/24/2022] [Indexed: 11/02/2022]
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Inclusion complexes of water-soluble calix[n]arenes with quercetin: preparation, characterization, water solubility, and antioxidant features. MONATSHEFTE FUR CHEMIE 2022. [DOI: 10.1007/s00706-021-02885-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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Ozyilmaz E, Ascioglu S, Yilmaz M. Preparation of One‐Pot Immobilized Lipase with Fe
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O
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Nanoparticles Into Metal‐Organic Framework For Enantioselective Hydrolysis of (
R,S
)‐Naproxen Methyl Ester. ChemCatChem 2021. [DOI: 10.1002/cctc.202100481] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Elif Ozyilmaz
- Department of Biochemistry Selcuk University 42075 Konya Turkey
| | | | - Mustafa Yilmaz
- Department of Chemistry Selcuk University 42075 Konya Turkey
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Yildirim A, Karakurt S, Yilmaz M. Synthesized Two New Water‐Soluble Fluorescents Calix[4]arene 4‐sulfo‐1,8‐naphthalimide Derivatives Inhibit Proliferation of Human Colorectal Carcinoma Cells. ChemistrySelect 2021. [DOI: 10.1002/slct.202101806] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Ayse Yildirim
- Department of Chemistry Selcuk University 142075 Konya Turkey
| | - Serdar Karakurt
- Department of Biochemistry Selcuk University 142075 Konya Turkey
| | - Mustafa Yilmaz
- Department of Chemistry Selcuk University 142075 Konya Turkey
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Ozyilmaz E, Ascioglu S, Yilmaz M. Calix[4]arene tetracarboxylic acid-treated lipase immobilized onto metal-organic framework: Biocatalyst for ester hydrolysis and kinetic resolution. Int J Biol Macromol 2021; 175:79-86. [PMID: 33548316 DOI: 10.1016/j.ijbiomac.2021.02.003] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Revised: 01/21/2021] [Accepted: 02/01/2021] [Indexed: 12/18/2022]
Abstract
Metal organic frameworks (MOFs) are hybrid organic inorganic materials with unique properties such as well-defined pore structure, extremely high surface area, excellent chemical-thermal stability. MOFs-based constructs have been extensively engineered and used for applications, such as enzyme immobilization for bio-catalysis. To obtained a zeolitic imidazole framework-8 (ZIF-8) for enzyme immobilization, Candida rugosa lipase (CRL) was pretreated with calix [4]arene tetracarboxylic acid (Calix) and reacted with Zn and imidazole by co-precipitation method. The prepared biocomposite was characterized by SEM, EDX, FT-IR, and XRD. The prepared CRL@Calix-ZIF-8 with high encapsulation efficiency showed improved resistance to alkali and thermal conditions. The CRL@Calix-ZIF-8 with the biocatalytic activity was 2-folds higher than that of the CRL@ZIF-8 (without Calix). The free lipase lost its catalytic activity completely at 60 °C after 100 min, while the CRL@Calix-ZIF-8 and CRL@ZIF-8 retained about 84% and 73%. It was found that CRL@Calix-ZIF-8 and CRL@ZIF-8 still retained ~83 and 67% of catalytic activity after its 6th use, respectively. The kinetic resolution of the immobilized lipases was examined for enantioselective hydrolysis of racemic naproxen methyl ester. CRL@Calix-ZIF-8 showed enantioselectivity against the racemic naproxen methyl ester, with E = 183 and 131 compared to the CRL@ZIF-8.
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Affiliation(s)
- Elif Ozyilmaz
- Department of Biochemistry, Selcuk University, 42075 Konya, Turkey.
| | - Sebahat Ascioglu
- Department of Biochemistry, Selcuk University, 42075 Konya, Turkey
| | - Mustafa Yilmaz
- Department of Chemistry, Selcuk University, 42075 Konya, Turkey
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Gassoumi B, Mohamed FEB, Khedmi N, Karayel A, Echabaane M, Ghalla H, Özkınalı S, Ben Chaabane R. Theoretical assessment of calix[4]arene-N-β-ketoimine (n=1-4) derivatives: Conformational studies, optoelectronic, and sensing of Cu 2+cation. J Mol Model 2021; 27:16. [PMID: 33409596 DOI: 10.1007/s00894-020-04622-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2020] [Accepted: 11/26/2020] [Indexed: 11/25/2022]
Abstract
Herein, we have investigated the key functions of the calix[4]arene, abbreviated as CX [1], and designed its several derivatives by substitution of the functional groups. Molecular geometry provides an intuitive understanding of the effect of functional groups on various physical properties. The addition of the N-β-ketoimine (n = 1-4) ligands has a direct effect on the stretching vibration of the H-bonding interaction. The results showed that all molecules possess absorption bands at 190 nm and in the range between 200 and 300 nm assigned to π-π* and n-π* transitions. HOMO-LUMO energy gap of the CX[4]-N-β-ketoimine, one with chemical hardness of 1.62 eV, has been found to be 3.24 eV calculated at B3LYP/6-31 + G(d) level of theory. This finding explains the good kinetic stability of this compound. The large values of electrophilicity make the current molecules as a good electrophilic species. The atom in molecule (AIM) and the reduced density gradient (RDG) analyses showed the type and the strength of the interactions taking place between Cu2+ and the β-ketoimine ligands.
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Affiliation(s)
- B Gassoumi
- Laboratory of Advanced Materials and Interfaces (LIMA), Faculty of Science of Monastir, Avenue of Environnment, University of Monastir, 5000, Monastir, Tunisia.
- Institute of Light and Matter, UMR5306 University of Lyon1-CNRS, University of Lyon, 69622, Villeurbanne Cedex, France.
| | - F E Ben Mohamed
- Department of Physics, Faculty of Arts and Sciences of AlMikhwah, Al-BAHA University, Al Baha, Kingdom of Saudi Arabia
| | - N Khedmi
- Department of Physics, Faculty of Arts and Sciences of AlMikhwah, Al-BAHA University, Al Baha, Kingdom of Saudi Arabia
| | - A Karayel
- Department of Physics, Faculty of Arts and Sciences, Hitit University, Çorum, Turkey
| | - M Echabaane
- NANOMISENE Lab, LR16CRMN01, Centre for Research on Microelectronics and Nanotechnology CRMN of Technopark of Sousse, B.P. 334, Sahloul, 4034, Sousse, Tunisia
| | - H Ghalla
- Quantum and Statistical Physics Laboratory, Faculty of Science, University of Monastir, 5079, Monastir, Tunisia
| | - S Özkınalı
- Department of Chemistry, Faculty of Arts and Sciences, Hitit University, Çorum, Turkey
| | - R Ben Chaabane
- Laboratory of Advanced Materials and Interfaces (LIMA), Faculty of Science of Monastir, Avenue of Environnment, University of Monastir, 5000, Monastir, Tunisia.
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