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Bojórquez-Sánchez AM, Diaz-Vidal T, Rosales-Rivera LC, Leyva-Soto LA, Martínez-Alarcón D, Díaz-Tenorio LM, Martínez-Pérez RB. A contribution to lipid digestion of Odobenidae family: Computational analysis of gastric and pancreatic lipases from walrus (Odobenus rosmarus divergens). Int J Biol Macromol 2024; 275:132985. [PMID: 38871103 DOI: 10.1016/j.ijbiomac.2024.132985] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2023] [Revised: 06/04/2024] [Accepted: 06/05/2024] [Indexed: 06/15/2024]
Abstract
Triacylglycerols (TAGs) are a primary energy source for marine mammals during lipid digestion. Walruses (Odobenus rosmarus divergens) consume prey with a high content of long-chain polyunsaturated fatty acids; however, their digestive physiology and lipid digestion remain poorly studied. The present study aims to model and characterize the gastric (PWGL) and pancreatic (PWPL) lipases of Pacific walruses using an in-silico approach. The confident 3D models of PWGL and PWPL were obtained via homology modeling and protein threading and displayed the structural features of lipases. Molecular docking analysis demonstrated substrate selectivity for long-chain TAG (Trieicosapentaenoin; TC20:5n-3) in PWGL and short-chain TAG (Trioctanoin; TC8:0) in PWPL. Molecular dynamics simulations demonstrate that PWGL bound to tridocosahexaenoin (TC22:6n-3), the protein is considerably stable at all three salinity conditions, but fluctuations are observed in the regions associated with catalytic sites and the lid, indicating the potential hydrolysis of the substrate. This is the first study to report on the digestion of TAGs in walruses, including modeling and lipases characterization and proposing a digestive tract for pinnipeds.
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Affiliation(s)
- Ana María Bojórquez-Sánchez
- Department of Biotechnology and Food Sciences, Instituto Tecnológico de Sonora, 85137 Ciudad Obregón, Mexico
| | - Tania Diaz-Vidal
- Department of Chemical Engineering, CUCEI, Universidad de Guadalajara, Guadalajara 44430, Mexico
| | | | - Luis Alonso Leyva-Soto
- Department of Biotechnology and Food Sciences, Instituto Tecnológico de Sonora, 85137 Ciudad Obregón, Mexico; CONAHCYT Chair Program, Researchers for México, Av. Insurgentes Sur 1582, Col Crédito Constructor Demarcación Territorial Benito Juárez, 03940 Ciudad de México, Mexico
| | - Diana Martínez-Alarcón
- UMR-MARBEC, Université de Montpellier, CNRS, Ifremer, IRD, Place Eugène Bataillon, Montpellier 34095, France
| | | | - Raúl Balam Martínez-Pérez
- Department of Biotechnology and Food Sciences, Instituto Tecnológico de Sonora, 85137 Ciudad Obregón, Mexico.
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Eskandari A, Leow TC, Rahman MBA, Oslan SN. Recent insight into the advances and prospects of microbial lipases and their potential applications in industry. Int Microbiol 2024:10.1007/s10123-024-00498-7. [PMID: 38489100 DOI: 10.1007/s10123-024-00498-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Revised: 03/04/2024] [Accepted: 03/07/2024] [Indexed: 03/17/2024]
Abstract
Enzymes play a crucial role in various industrial sectors. These biocatalysts not only ensure sustainability and safety but also enhance process efficiency through their unique specificity. Lipases possess versatility as biocatalysts and find utilization in diverse bioconversion reactions. Presently, microbial lipases are gaining significant focus owing to the rapid progress in enzyme technology and their widespread implementation in multiple industrial procedures. This updated review presents new knowledge about various origins of microbial lipases, such as fungi, bacteria, and yeast. It highlights both the traditional and modern purification methods, including precipitation and chromatographic separation, the immunopurification technique, the reversed micellar system, the aqueous two-phase system (ATPS), and aqueous two-phase flotation (ATPF), moreover, delves into the diverse applications of microbial lipases across several industries, such as food, vitamin esters, textile, detergent, biodiesel, and bioremediation. Furthermore, the present research unveils the obstacles encountered in employing lipase, the patterns observed in lipase engineering, and the application of CRISPR/Cas genome editing technology for altering the genes responsible for lipase production. Additionally, the immobilization of microorganisms' lipases onto various carriers also contributes to enhancing the effectiveness and efficiencies of lipases in terms of their catalytic activities. This is achieved by boosting their resilience to heat and ionic conditions (such as inorganic solvents, high-level pH, and temperature). The process also facilitates the ease of recycling them and enables a more concentrated deposition of the enzyme onto the supporting material. Consequently, these characteristics have demonstrated their suitability for application as biocatalysts in diverse industries.
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Affiliation(s)
- Azadeh Eskandari
- Enzyme and Microbial Technology Research Centre, Universiti Putra Malaysia, UPM, 43400, Serdang, Selangor, Malaysia
- Department of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, UPM, 43400, Serdang, Selangor, Malaysia
| | - Thean Chor Leow
- Enzyme and Microbial Technology Research Centre, Universiti Putra Malaysia, UPM, 43400, Serdang, Selangor, Malaysia
- Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, UPM, 43400, Serdang, Selangor, Malaysia
- Enzyme Technology and X-ray Crystallography Laboratory, VacBio 5, Institute of Bioscience, Universiti Putra Malaysia, UPM, 43400, Serdang, Selangor, Malaysia
| | | | - Siti Nurbaya Oslan
- Enzyme and Microbial Technology Research Centre, Universiti Putra Malaysia, UPM, 43400, Serdang, Selangor, Malaysia.
- Department of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, UPM, 43400, Serdang, Selangor, Malaysia.
- Enzyme Technology and X-ray Crystallography Laboratory, VacBio 5, Institute of Bioscience, Universiti Putra Malaysia, UPM, 43400, Serdang, Selangor, Malaysia.
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Sundaramahalingam MA, Amrutha C, Sivashanmugam P, Rajeshbanu J. An encapsulated report on enzyme-assisted transesterification with an allusion to lipase. 3 Biotech 2021; 11:481. [PMID: 34790505 PMCID: PMC8557240 DOI: 10.1007/s13205-021-03003-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Accepted: 09/26/2021] [Indexed: 10/19/2022] Open
Abstract
Biodiesel is a renewable, sulfur-free, toxic-free, and low carbon fuel which possesses enhanced lubricity. Transesterification is the easiest method employed for the production of biodiesel, in which the oil is transformed into biodiesel. Biocatalyst-mediated transesterification is more advantageous than chemical process because of its non-toxic nature, the requirement of mild reaction conditions, absence of saponification, easy product recovery, and production of high-quality biodiesel. Lipases are found to be the primary enzymes in enzyme-mediated transesterification process. Currently, researchers are using lipases as biocatalyst for transesterification. Lipases are extracted from various sources such as plants, microbes, and animals. Biocatalyst-based biodiesel production is not yet commercialized due to high-cost of purified enzymes and higher reaction time for the production process. However, research works are growing in the area of various cost-effective techniques for immobilizing lipase to improve its reusability. And further reduction in the production cost of lipases can be achieved by genetic engineering techniques. The reduction in reaction time can be achieved through ultrasonic-assisted biocatalytic transesterification. Biodiesel production by enzymatic transesterification is affected by many factors. Various methods have been developed to control these factors and improve biodiesel production. This report summarizes the various sources of lipase, various production strategies for lipase and the lipase-mediated transesterification. It is fully focused on the lipase enzyme and its role in biodiesel production. It also covers the detailed explanation of various influencing factors, which affect the lipase-mediated transesterification along with the limitations and scope of lipase in biodiesel production.
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Affiliation(s)
- M. A. Sundaramahalingam
- Chemical and Biochemical Process Engineering Laboratory, Department of Chemical Engineering, National Institute of Technology, Tiruchirappalli, Tamil Nadu 620015 India
| | - C. Amrutha
- Chemical and Biochemical Process Engineering Laboratory, Department of Chemical Engineering, National Institute of Technology, Tiruchirappalli, Tamil Nadu 620015 India
| | - P. Sivashanmugam
- Chemical and Biochemical Process Engineering Laboratory, Department of Chemical Engineering, National Institute of Technology, Tiruchirappalli, Tamil Nadu 620015 India
| | - J. Rajeshbanu
- Department of Life Sciences, Central University of Tamil Nadu, Neelakudi, Thiruvarur, Tamil Nadu 610 005 India
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Patchimpet J, Sangkharak K, Eiad-ua A, Klomklao S. Thermoseparating aqueous two-phase system for lipase recovery and partitioning from Nile tilapia viscera: Biochemical properties and effect of ultrasound. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.115721] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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5
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Patchimpet J, Sangkharak K, Klomklao S. Lipolytic activity of viscera extract from three freshwater fish species in Phatthalung, Thailand: Comparative studies and potential use as dishwashing detergent additive. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2019. [DOI: 10.1016/j.bcab.2019.101143] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Pongsetkul J, Benjakul S, Sumpavapol P, Vongkamjan K, Osako K. Bacillus subtilisK‐C3 isolated from Thai salted shrimp paste (Kapi): Its extracellular enzymes and use as a starter culture inKapiproduction. J Food Biochem 2018. [DOI: 10.1111/jfbc.12649] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Jaksuma Pongsetkul
- Department of Food Technology Prince of Songkla University Songkhla Thailand
| | - Soottawat Benjakul
- Department of Food Technology Prince of Songkla University Songkhla Thailand
| | - Punnanee Sumpavapol
- Department of Food Technology Prince of Songkla University Songkhla Thailand
| | - Kitiya Vongkamjan
- Department of Food Technology Prince of Songkla University Songkhla Thailand
| | - Kazufumi Osako
- Department of Food Science and Technology Tokyo University of Marine Science and Technology Tokyo Japan
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Sarmah N, Revathi D, Sheelu G, Yamuna Rani K, Sridhar S, Mehtab V, Sumana C. Recent advances on sources and industrial applications of lipases. Biotechnol Prog 2017; 34:5-28. [DOI: 10.1002/btpr.2581] [Citation(s) in RCA: 172] [Impact Index Per Article: 24.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2017] [Revised: 10/18/2017] [Indexed: 12/13/2022]
Affiliation(s)
- Nipon Sarmah
- Chemical Engineering Div.; CSIR-Indian Institute of Chemical Technology; Hyderabad 500007 India
- Academy of Scientific and Innovative Research (AcSIR); Chennai 600 113 India
| | - D. Revathi
- Chemical Engineering Div.; CSIR-Indian Institute of Chemical Technology; Hyderabad 500007 India
| | - G. Sheelu
- Medicinal Chemistry and Pharmacology Div.; CSIR-Indian Institute of Chemical Technology; Hyderabad 500007 India
| | - K. Yamuna Rani
- Chemical Engineering Div.; CSIR-Indian Institute of Chemical Technology; Hyderabad 500007 India
| | - S. Sridhar
- Chemical Engineering Div.; CSIR-Indian Institute of Chemical Technology; Hyderabad 500007 India
| | - V. Mehtab
- Chemical Engineering Div.; CSIR-Indian Institute of Chemical Technology; Hyderabad 500007 India
| | - C. Sumana
- Chemical Engineering Div.; CSIR-Indian Institute of Chemical Technology; Hyderabad 500007 India
- Academy of Scientific and Innovative Research (AcSIR); Chennai 600 113 India
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Poonsin T, Simpson BK, Benjakul S, Visessanguan W, Yoshida A, Klomklao S. Carotenoprotein from Pacific white shrimp (Litopenaeus vannamei
) shells extracted using trypsin from albacore tuna (Thunnus alalunga
) spleen: Antioxidant activity and its potential in model systems. J Food Biochem 2017. [DOI: 10.1111/jfbc.12462] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Tanchanok Poonsin
- Biotechnology Program, Faculty of Technology and Community Development; Thaksin University, Phatthalung Campus; Phatthalung 93210 Thailand
| | - Benjamin K. Simpson
- Department of Food Science and Agricultural Chemistry; McGill University, Macdonald Campus, Ste. Anne de Bellevue; Quebec H9X 3V9 Canada
| | - Soottawat Benjakul
- Department of Food Technology, Faculty of Agro-Industry; Prince of Songkla University; Hat Yai, Songkhla 90112 Thailand
| | - Wonnop Visessanguan
- National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, 113 Paholayothin Road, Klong 1, Klong Luang; Pathumthani 12120 Thailand
| | - Asami Yoshida
- Graduate School of Fisheries Science and Environmental Studies; Nagasaki University, 1-14 Bunkyo; Nagasaki 852-8521 Japan
| | - Sappasith Klomklao
- Department of Food Science and Technology, Faculty of Technology and Community Development; Thaksin University, Phatthalung Campus; Phatthalung 93210 Thailand
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Kuepethkaew S, Sangkharak K, Benjakul S, Klomklao S. Use of TPP and ATPS for partitioning and recovery of lipase from Pacific white shrimp ( Litopenaeus vannamei) hepatopancreas. JOURNAL OF FOOD SCIENCE AND TECHNOLOGY 2017; 54:3880-3891. [PMID: 29085130 PMCID: PMC5643804 DOI: 10.1007/s13197-017-2844-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Revised: 08/02/2017] [Accepted: 08/31/2017] [Indexed: 10/18/2022]
Abstract
Lipase recovery from Pacific white shrimp hepatopancreas using a three-phase partitioning (TPP) system in combination with an aqueous two-phase system (ATPS) was studied. TPP system was formed with a simultaneous addition of salt directly to crude extract (CE) followed by an organic solvent addition. The various process parameters required for efficient purification of lipase were optimized. The best lipase yield (87.41%) and purification fold (PF) (3.49-fold) were obtained in the interphase of TPP system, which consisted of the CE to t-butanol ratio of 1:1 (v/v) in the presence of 50% (w/v) (NH4)2SO4. Subsequently, TPP fraction was subjected to ATPS. Effects of phase compositions including PEG molecular weight and concentration, types and concentration of salts, NaCl addition and system pH on lipase partitioning were investigated. With the application of 25% (w/w) PEG1000 and 15% (w/w) MgSO4, at pH 5.0 was found most appropriate since high lipase PF (5.19-fold) and yield (78.46%) in top phase were obtained. The partitioned enzyme exhibited optimal activity at pH 8.0 and 55 °C and was stable at a temperature range of 0-40 °C and a pH range of 7-10. The partitioned lipase showed high tolerance in the presence of ethanol and methanol. Hence, the combined partitioning systems, TPP-ATPS, were found to be an attractive technique for the recovery and partial purification of lipase from Pacific white shrimp hepatopancreas.
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Affiliation(s)
- S. Kuepethkaew
- Biotechnology Program, Faculty of Technology and Community Development, Thaksin University, Phatthalung Campus, Pa-Phayom, Phatthalung 93210 Thailand
| | - K. Sangkharak
- Department of Chemistry, Faculty of Science, Thaksin University, Phatthalung Campus, Pa-Phayom, Phatthalung 93210 Thailand
| | - S. Benjakul
- Department of Food Technology, Faculty of Agro-Industry, Prince of Songkla University, Hat Yai, Songkhla, 90112 Thailand
| | - S. Klomklao
- Department of Food Science and Technology, Faculty of Technology and Community Development, Thaksin University, Phatthalung Campus, Pa-Phayom, Phatthalung 93210 Thailand
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Sae-Leaw T, Benjakul S. Lipase from liver of seabass (Lates calcarifer): Characteristics and the use for defatting of fish skin. Food Chem 2017; 240:9-15. [PMID: 28946358 DOI: 10.1016/j.foodchem.2017.07.089] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2017] [Revised: 05/26/2017] [Accepted: 07/18/2017] [Indexed: 10/19/2022]
Abstract
Lipase from liver of seabass (Lates calcarifer), with a molecular weight of 60kDa, was purified to homogeneity using ammonium sulfate precipitation and a series of chromatographies, including diethylaminoethyl sepharose (DEAE) and Sephadex G-75 size exclusion columns. The optimal pH and temperature were 8.0 and 50°C, respectively. Purified lipase had Michaelis-Menten constant (Km) and catalytic constant (kcat) of 0.30mM and 2.16s-1, respectively, when p-nitrophenyl palmitate (p-NPP) was used as the substrate. When seabass skin was treated with crude lipase from seabass liver at various levels (0.15 and 0.30units/g dry skin) for 1-3h at 30°C, the skin treated with lipase at 0.30 units/g dry skin for 3h had the highest lipid removal (84.57%) with lower lipid distribution in skin. Efficacy in defatting was higher than when isopropanol was used. Thus, lipase from liver of seabass could be used to remove fat in fish skin.
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Affiliation(s)
- Thanasak Sae-Leaw
- Department of Food Technology, Faculty of Agro-Industry, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand
| | - Soottawat Benjakul
- Department of Food Technology, Faculty of Agro-Industry, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand.
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