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Chin HS, Ravi Varadharajulu N, Lin ZH, Chen WY, Zhang ZH, Arumugam S, Lai CY, Yu SSF. Isolation, molecular identification, and genomic analysis of Mangrovibacter phragmitis strain ASIOC01 from activated sludge harboring the bioremediation prowess of glycerol and organic pollutants in high-salinity. Front Microbiol 2024; 15:1415723. [PMID: 38983623 PMCID: PMC11231211 DOI: 10.3389/fmicb.2024.1415723] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2024] [Accepted: 06/04/2024] [Indexed: 07/11/2024] Open
Abstract
The physiological and genotypic characteristics of Mangrovibacter (MGB) remain largely unexplored, including their distribution and abundance within ecosystems. M. phragmitis (MPH) ASIOC01 was successfully isolated from activated sludge (AS), which was pre-enriched by adding 1,3-dichloro-2-propanol and 3-chloro-1,2-propanediol as carbon sources. The new isolate, MPH ASIOC01, exhibited resilience in a medium containing sodium chloride concentration up to 11% (with optimal growth observed at 3%) and effectively utilizing glycerol as their sole carbon source. However, species delimitation of MGBs remains challenging due to high 16S rRNA sequence similarity (greater than 99% ANI) among different MGBs. In contrast, among the housekeeping gene discrepancies, the tryptophan synthase beta chain gene can serve as a robust marker for fast species delimitation among MGBs. Furthermore, the complete genome of MPH ASIOC01 was fully sequenced and circlized as a single contig using the PacBio HiFi sequencing method. Comparative genomics revealed genes potentially associated with various phenotypic features of MGBs, such as nitrogen-fixing, phosphate-solubilizing, cellulose-digesting, Cr-reducing, and salt tolerance. Computational analysis suggested that MPH ASIOC01 may have undergone horizontal gene transfer events, possibly contributing unique traits such as antibiotic resistance. Finally, our findings also disclosed that the introduction of MPH ASIOC01 into AS can assist in the remediation of wastewater chemical oxygen demand, which was evaluated using gas chromatograph-mass spectrometry. To the best of our knowledge, this study offers the most comprehensive understanding of the phenotypic and genotypic features of MGBs to date.
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Affiliation(s)
- Hong Soon Chin
- Institute of Chemistry, Academia Sinica, Taipei, Taiwan
- Chemical Biology and Molecular Biophysics Program, Taiwan International Graduate Program, Academia Sinica, Taipei, Taiwan
- Institute of Bioinformatics and Structural Biology, National Tsing Hua University, Hsinchu, Taiwan
| | - Narendrakumar Ravi Varadharajulu
- Institute of Chemistry, Academia Sinica, Taipei, Taiwan
- Molecular Science and Technology Program, Taiwan International Graduate Program, Academia Sinica, Taipei, Taiwan
- Department of Chemistry, National Tsing Hua University, Hsinchu, Taiwan
| | - Zhi-Han Lin
- Institute of Chemistry, Academia Sinica, Taipei, Taiwan
- Chemical Biology and Molecular Biophysics Program, Taiwan International Graduate Program, Academia Sinica, Taipei, Taiwan
- Institute of Biochemical Sciences, National Taiwan University, Taipei, Taiwan
| | - Wen-Yu Chen
- Institute of Chemistry, Academia Sinica, Taipei, Taiwan
| | - Zong-Han Zhang
- Institute of Chemistry, Academia Sinica, Taipei, Taiwan
- Ph.D. Program in Microbial Genomics, National Chung Hsing University, Taichung City, Taiwan
| | | | - Ching-Yen Lai
- Institute of Chemistry, Academia Sinica, Taipei, Taiwan
| | - Steve S.-F. Yu
- Institute of Chemistry, Academia Sinica, Taipei, Taiwan
- Chemical Biology and Molecular Biophysics Program, Taiwan International Graduate Program, Academia Sinica, Taipei, Taiwan
- Molecular Science and Technology Program, Taiwan International Graduate Program, Academia Sinica, Taipei, Taiwan
- Ph.D. Program in Microbial Genomics, National Chung Hsing University, Taichung City, Taiwan
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Zhang Y, Xie Z, Lu C, Guo J, Chen Z, Li H, Song Y, Han Y, Hou Y. Study on the electron transfer capability of porphyrin ring and the mechanisms in the catalytic denitrification. Biochem Eng J 2021. [DOI: 10.1016/j.bej.2021.108010] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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Wang Q, Zhao Y, Zhai S, Liu D, Zhou X, Wang Y, Cabrera J, Ji M. Application of different redox mediators induced bio-promoters to accelerate the recovery of denitrification and denitrifying functional microorganisms inhibited by transient Cr(VI) shock. JOURNAL OF HAZARDOUS MATERIALS 2021; 420:126664. [PMID: 34329097 DOI: 10.1016/j.jhazmat.2021.126664] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2021] [Revised: 07/08/2021] [Accepted: 07/14/2021] [Indexed: 06/13/2023]
Abstract
The transient hexavalent chromium (Cr(VI)) shock may directly inhibit the denitrification process of municipal wastewater treatment plants (WWTPs), which is difficult to recover in a short time. This study developed four nontoxic bio-promoters (combination of L-cysteine, flavin adenine dinucleotide (FAD), biotin, cytokinin and different redox mediators) to quickly restore the denitrification performance after high-loading Cr(VI) suppressing. After feeding with 100 mg/L of Cr(VI) for 42 cycles (T, 4 h), the removal efficiency of nitrate was reduced by 85.00%, and nitrite was accumulated simultaneously. The denitrification performance was recovered quickly with the addition of bio-promoters, introducing redox mediators showed noticeable superiority on the bio-inhibition release. Compared with sodium humate and riboflavin, the AQDS induced bio-promoter achieved the best nitrate removal recovery performance within only 28 T, and the recovery rate was 2.16 times faster than the natural recovery. Microbial analysis showed that Cr(VI) specially inhibited napA-type denitrifiers, and the OTU numbers sharply dropped by 48.74%. Redox mediators induced bio-promoters could effectively recover the abundance of napA-type and nirS-type denitrifying microorganisms, which was consistent with the change of nitrate removal efficiency. This study offers a cost-effective approach to deal with Cr(VI) shock problem, which may promote the development of bio-promoters for WWTPs.
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Affiliation(s)
- Qian Wang
- School of Environmental Science and Engineering, Tianjin University, Tianjin 300350, China
| | - Yingxin Zhao
- School of Environmental Science and Engineering, Tianjin University, Tianjin 300350, China.
| | - Siyuan Zhai
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China.
| | - Duo Liu
- The Ninth Waterworks of Beijing Waterworks Group Co., Ltd, Beijing 100012, China
| | - Xu Zhou
- School of Environmental Science and Engineering, Tianjin University, Tianjin 300350, China
| | - Yue Wang
- Advanced Water Management Centre, The University of Queensland, St Lucia, Brisbane, QLD 4072, Australian
| | - Jonnathan Cabrera
- School of Environmental Science and Engineering, Tianjin University, Tianjin 300350, China
| | - Min Ji
- School of Environmental Science and Engineering, Tianjin University, Tianjin 300350, China
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Rahman Z, Thomas L. Chemical-Assisted Microbially Mediated Chromium (Cr) (VI) Reduction Under the Influence of Various Electron Donors, Redox Mediators, and Other Additives: An Outlook on Enhanced Cr(VI) Removal. Front Microbiol 2021; 11:619766. [PMID: 33584585 PMCID: PMC7875889 DOI: 10.3389/fmicb.2020.619766] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Accepted: 12/16/2020] [Indexed: 12/13/2022] Open
Abstract
Chromium (Cr) (VI) is a well-known toxin to all types of biological organisms. Over the past few decades, many investigators have employed numerous bioprocesses to neutralize the toxic effects of Cr(VI). One of the main process for its treatment is bioreduction into Cr(III). Key to this process is the ability of microbial enzymes, which facilitate the transfer of electrons into the high valence state of the metal that acts as an electron acceptor. Many underlying previous efforts have stressed on the use of different external organic and inorganic substances as electron donors to promote Cr(VI) reduction process by different microorganisms. The use of various redox mediators enabled electron transport facility for extracellular Cr(VI) reduction and accelerated the reaction. Also, many chemicals have employed diverse roles to improve the Cr(VI) reduction process in different microorganisms. The application of aforementioned materials at the contaminated systems has offered a variety of influence on Cr(VI) bioremediation by altering microbial community structures and functions and redox environment. The collective insights suggest that the knowledge of appropriate implementation of suitable nutrients can strongly inspire the Cr(VI) reduction rate and efficiency. However, a comprehensive information on such substances and their roles and biochemical pathways in different microorganisms remains elusive. In this regard, our review sheds light on the contributions of various chemicals as electron donors, redox mediators, cofactors, etc., on microbial Cr(VI) reduction for enhanced treatment practices.
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Affiliation(s)
- Zeeshanur Rahman
- Department of Botany, Zakir Husain Delhi College, University of Delhi, Delhi, India
| | - Lebin Thomas
- Department of Botany, Hansraj College, University of Delhi, Delhi, India
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Cervantes‐González J, Vosburg DA, Mora‐Rodriguez SE, Vázquez MA, Zepeda LG, Villegas Gómez C, Lagunas‐Rivera S. Anthraquinones: Versatile Organic Photocatalysts. ChemCatChem 2020. [DOI: 10.1002/cctc.202000376] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Javier Cervantes‐González
- Departamento de Química, DCNyE Universidad de Guanajuato Noria Alta s/n Guanajuato Gto. 36050 México
| | - David A. Vosburg
- Department of Chemistry Harvey Mudd College 301 Platt Blvd Claremont CA 91711-5901 USA
| | - Salma E. Mora‐Rodriguez
- Departamento de Química, DCNyE Universidad de Guanajuato Noria Alta s/n Guanajuato Gto. 36050 México
| | - Miguel A. Vázquez
- Departamento de Química, DCNyE Universidad de Guanajuato Noria Alta s/n Guanajuato Gto. 36050 México
| | - L. Gerardo Zepeda
- Departamento de Química Orgánica Escuela Nacional de Ciencias Biológicas Instituto Politécnico Nacional Prol de Carpio y Plan de Ayala Ciudad de México 11340 México
| | - Clarisa Villegas Gómez
- Departamento de Química, DCNyE Universidad de Guanajuato Noria Alta s/n Guanajuato Gto. 36050 México
| | - Selene Lagunas‐Rivera
- Cátedra-CONACyT. Departamento de Química Universidad de Guanajuato, DCNyE Noria Alta s/n Guanajuato Gto. 36050 México
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Rodriguez SY, Cantú ME, Garcia-Reyes B, Garza-Gonzalez MT, Meza-Escalante ER, Serrano D, Alvarez LH. Biotransformation of 4-nitrophenol by co-immobilized Geobacter sulfurreducens and anthraquinone-2-sulfonate in barium alginate beads. CHEMOSPHERE 2019; 221:219-225. [PMID: 30640004 DOI: 10.1016/j.chemosphere.2019.01.041] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2018] [Revised: 12/13/2018] [Accepted: 01/06/2019] [Indexed: 05/17/2023]
Abstract
Geobacter sulfurreducens and anthraquinone-2-sulfonate (AQS) were used suspended and immobilized in barium alginate during the biotransformation of 4-nitrophenol (4-NP). The assays were conducted at different concentrations of 4-NP (50-400 mg/L) and AQS, either in suspended (0-400 μM) or immobilized form (0 or 760 μM), and under different pH values (5-9). G. sulfurreducens showed low capacity to reduce 4-NP in absence of AQS, especially at the highest concentrations of the contaminant. AQS improved the reduction rates from 0.0086 h-1, without AQS, to 0.149 h-1 at 400 μM AQS, which represent an increment of 17.3-fold. The co-immobilization of AQS and G. sulfurreducens in barium alginate beads (AQSi-Gi) increased the reduction rates up to 4.8- and 7.2-fold, compared to incubations with G. sulfurreducens in suspended and immobilized form, but in absence of AQS. AQSi-Gi provides to G. sulfurreducens a barrier against the possibly inhibiting effects of 4-NP.
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Affiliation(s)
- Sujei Y Rodriguez
- Universidad Autonoma de Nuevo Leon (UANL), Facultad de Ciencias Quimicas, Av. Universidad S/N, Cd. Universitaria, San Nicolas de los Garza, 66455, Nuevo Leon, Mexico
| | - Maria E Cantú
- Universidad Autonoma de Nuevo Leon (UANL), Facultad de Ciencias Quimicas, Av. Universidad S/N, Cd. Universitaria, San Nicolas de los Garza, 66455, Nuevo Leon, Mexico
| | - Bernardo Garcia-Reyes
- Universidad Autonoma de Nuevo Leon (UANL), Facultad de Ciencias Quimicas, Av. Universidad S/N, Cd. Universitaria, San Nicolas de los Garza, 66455, Nuevo Leon, Mexico
| | - Maria T Garza-Gonzalez
- Universidad Autonoma de Nuevo Leon (UANL), Facultad de Ciencias Quimicas, Av. Universidad S/N, Cd. Universitaria, San Nicolas de los Garza, 66455, Nuevo Leon, Mexico
| | - Edna R Meza-Escalante
- Instituto Tecnologico de Sonora (ITSON), Departamento de Ciencias del Agua y Medio Ambiente, 5 de Febrero 818 Sur, C.P. 85000, Cuidad Obregon, Sonora, Mexico
| | - Denisse Serrano
- Instituto Tecnologico de Sonora (ITSON), Departamento de Ciencias del Agua y Medio Ambiente, 5 de Febrero 818 Sur, C.P. 85000, Cuidad Obregon, Sonora, Mexico
| | - Luis H Alvarez
- Universidad Autonoma de Nuevo Leon (UANL), Facultad de Ciencias Quimicas, Av. Universidad S/N, Cd. Universitaria, San Nicolas de los Garza, 66455, Nuevo Leon, Mexico; Instituto Tecnologico de Sonora (ITSON), Departamento de Ciencias Agronomicas y Veterinarias, 5 de Febrero 818 Sur, C.P. 85000, Cuidad Obregon, Sonora, Mexico.
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Aneksampant A, Tanaka A, Tu X, Iwai H, Yamamoto M, Nakashima K, Fukushima M. Roles of Microbial Activity and Anthraquinone-2,7-disulfonate as a Model of Humic Substances in Leaching of Iron from Hematite into Seawater. ANAL SCI 2018; 34:1303-1308. [PMID: 30078814 DOI: 10.2116/analsci.18p147] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Fertilization with a mixture of steelmaking slag and compost can affect the supply of dissolved iron used to restore seaweed beds, however, the mechanisms of iron elution from the fertilizer are not well understood. In the present study, the microorganism was isolated from Fe-fertilizer incubated in coastal seawater for 6 months, and was identified as Exiguobacterium oxidotolerans by 16S rDNA sequencing. The iron elutability of the bacteria was proved based on the increasing of dissolved iron by incubation with Fe2O3 (hematite) under a seawater-like condition. The value of ORP was changed by inoculated of the bacteria from ca. 0 to ca. -400 mV, which is anticipated concerning to reduction of Fe. The concentration of eluted iron was largely depended on those of organic acids produced by bacteria. From the results, it was proved that E. oxidotolerans is capable of Fe reductive eluting of iron from Fe2O3 into seawater. Anthraquinone-2,7-disulfonate (AQDS), which can play as an electron acceptor/donor between microbe and insoluble Fe2O3 particles, enhanced the effect of iron bio-leaching.
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Affiliation(s)
- Apichaya Aneksampant
- Division of Sustainable Resources Engineering, Faculty of Engineering, Hokkaido University
| | - Atsushi Tanaka
- Graduate School of Environment Science, Hokkaido University
| | - Xuefei Tu
- Division of Sustainable Resources Engineering, Faculty of Engineering, Hokkaido University
| | - Hisanori Iwai
- Department of Marine System Engineering, Graduate School of Engineering, Osaka Prefecture University
| | | | - Kazunori Nakashima
- Division of Sustainable Resources Engineering, Faculty of Engineering, Hokkaido University
| | - Masami Fukushima
- Division of Sustainable Resources Engineering, Faculty of Engineering, Hokkaido University
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Xie Z, Guo J, Lu C, Song Y, Xing Y, Yang Q, Han Y, Li H. Biocatalysis mechanisms and characterization of a novel denitrification process with porphyrin compounds based on the electron transfer chain. BIORESOURCE TECHNOLOGY 2018; 265:548-553. [PMID: 29803617 DOI: 10.1016/j.biortech.2018.05.069] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2018] [Revised: 05/16/2018] [Accepted: 05/17/2018] [Indexed: 06/08/2023]
Abstract
In this research, the nitrate reduction rate increased 2-3 fold in the presence of five different porphyrin compounds (0.25 mM), among which hemin expressed the best accelerating effectiveness. Therefore, hemin was used to explore the catalytic characteristics and mechanisms during denitrification. The relationship between hemin concentrations (Chemin) and nitrate reduction rates (k) could be best described by the equation k = 8.7463 + 0.44528ln (Chemin-0.00993) (R2 = 0.9908). Furthermore, the activation energy decreased 87% compared to the hemin-free system. Two active centers of hemin, the Fe3+ atom and the porphyrin ligand, might be involved in catalyzing the denitrification process. Additionally, the accelerating site of hemin in the denitrification electron transfer chain was elucidated by different metabolic inhibitors. This study provides a better understanding of porphyrin compounds in bio-multistage redox reactions and is a promising strategy for its practice application.
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Affiliation(s)
- Zhen Xie
- School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Jinjing Road 26, Tianjin 300384, China
| | - Jianbo Guo
- School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Jinjing Road 26, Tianjin 300384, China.
| | - Caicai Lu
- School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Jinjing Road 26, Tianjin 300384, China.
| | - Yuanyuan Song
- School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Jinjing Road 26, Tianjin 300384, China
| | - Yajuan Xing
- Key Laboratory of Recycling and Eco-treatment of Waste Biomass of Zhejiang Province, School of Civil Engineering and Architecture, Zhejiang University of Science and Technology, Hangzhou 310023, China
| | - Qingxiong Yang
- School of Karst Science, Guizhou Normal University, State Engineering Technology Institute for Karst Desertification Control, Guiyang 550001, China
| | - Yi Han
- School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Jinjing Road 26, Tianjin 300384, China
| | - Haibo Li
- School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Jinjing Road 26, Tianjin 300384, China
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