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Phillips WA, Bachmann T, Spratling MW, Muckli L, Petro LS, Zolnik T. Cellular psychology: relating cognition to context-sensitive pyramidal cells. Trends Cogn Sci 2024:S1364-6613(24)00224-9. [PMID: 39353837 DOI: 10.1016/j.tics.2024.09.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2024] [Revised: 09/05/2024] [Accepted: 09/06/2024] [Indexed: 10/04/2024]
Abstract
'Cellular psychology' is a new field of inquiry that studies dendritic mechanisms for adapting mental events to the current context, thus increasing their coherence, flexibility, effectiveness, and comprehensibility. Apical dendrites of neocortical pyramidal cells have a crucial role in cognition - those dendrites receive input from diverse sources, including feedback, and can amplify the cell's feedforward transmission if relevant in that context. Specialized subsets of inhibitory interneurons regulate this cooperative context-sensitive processing by increasing or decreasing amplification. Apical input has different effects on cellular output depending on whether we are awake, deeply asleep, or dreaming. Furthermore, wakeful thought and imagery may depend on apical input. High-resolution neuroimaging in humans supports and complements evidence on these cellular mechanisms from other mammals.
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Affiliation(s)
- William A Phillips
- Psychology, Faculty of Natural Sciences, University of Stirling, Stirling, FK9 4LA, UK.
| | - Talis Bachmann
- Institute of Psychology, University of Tartu, Tartu, Estonia.
| | - Michael W Spratling
- Department of Behavioral and Cognitive Sciences, University of Luxembourg, L-4366 Esch-Belval, Luxembourg
| | - Lars Muckli
- Centre for Cognitive Neuroimaging, School of Psychology and Neuroscience, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, G12 8QB, UK; Imaging Centre of Excellence, College of Medical, Veterinary and Life Sciences, University of Glasgow and Queen Elizabeth University Hospital, Glasgow, UK
| | - Lucy S Petro
- Centre for Cognitive Neuroimaging, School of Psychology and Neuroscience, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, G12 8QB, UK; Imaging Centre of Excellence, College of Medical, Veterinary and Life Sciences, University of Glasgow and Queen Elizabeth University Hospital, Glasgow, UK
| | - Timothy Zolnik
- Department of Biochemistry, Charité Universitätsmedizin Berlin, Berlin 10117, Germany; Department of Biology, Humboldt Universität zu Berlin, Berlin 10117, Germany
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Granato A, Phillips WA, Schulz JM, Suzuki M, Larkum ME. Dysfunctions of cellular context-sensitivity in neurodevelopmental learning disabilities. Neurosci Biobehav Rev 2024; 161:105688. [PMID: 38670298 DOI: 10.1016/j.neubiorev.2024.105688] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2024] [Revised: 04/17/2024] [Accepted: 04/21/2024] [Indexed: 04/28/2024]
Abstract
Pyramidal neurons have a pivotal role in the cognitive capabilities of neocortex. Though they have been predominantly modeled as integrate-and-fire point processors, many of them have another point of input integration in their apical dendrites that is central to mechanisms endowing them with the sensitivity to context that underlies basic cognitive capabilities. Here we review evidence implicating impairments of those mechanisms in three major neurodevelopmental disabilities, fragile X, Down syndrome, and fetal alcohol spectrum disorders. Multiple dysfunctions of the mechanisms by which pyramidal cells are sensitive to context are found to be implicated in all three syndromes. Further deciphering of these cellular mechanisms would lead to the understanding of and therapies for learning disabilities beyond any that are currently available.
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Affiliation(s)
- Alberto Granato
- Dept. of Veterinary Sciences. University of Turin, Grugliasco, Turin 10095, Italy.
| | - William A Phillips
- Psychology, Faculty of Natural Sciences, University of Stirling, Scotland FK9 4LA, UK
| | - Jan M Schulz
- Roche Pharma Research & Early Development, Neuroscience & Rare Diseases Discovery, Roche Innovation Center Basel, F. Hoffmann-La Roche Ltd, Grenzacherstrasse 124, Basel 4070, Switzerland
| | - Mototaka Suzuki
- Dept. of Cognitive and Systems Neuroscience, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam, Amsterdam 1098 XH, the Netherlands
| | - Matthew E Larkum
- Neurocure Center for Excellence, Charité Universitätsmedizin Berlin, Berlin 10117, Germany; Institute of Biology, Humboldt University Berlin, Berlin, Germany
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3
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Granato G, Cartoni E, Da Rold F, Mattera A, Baldassarre G. Integrating unsupervised and reinforcement learning in human categorical perception: A computational model. PLoS One 2022; 17:e0267838. [PMID: 35536843 PMCID: PMC9089926 DOI: 10.1371/journal.pone.0267838] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Accepted: 04/14/2022] [Indexed: 11/18/2022] Open
Abstract
Categorical perception identifies a tuning of human perceptual systems that can occur during the execution of a categorisation task. Despite the fact that experimental studies and computational models suggest that this tuning is influenced by task-independent effects (e.g., based on Hebbian and unsupervised learning, UL) and task-dependent effects (e.g., based on reward signals and reinforcement learning, RL), no model studies the UL/RL interaction during the emergence of categorical perception. Here we have investigated the effects of this interaction, proposing a system-level neuro-inspired computational architecture in which a perceptual component integrates UL and RL processes. The model has been tested with a categorisation task and the results show that a balanced mix of unsupervised and reinforcement learning leads to the emergence of a suitable categorical perception and the best performance in the task. Indeed, an excessive unsupervised learning contribution tends to not identify task-relevant features while an excessive reinforcement learning contribution tends to initially learn slowly and then to reach sub-optimal performance. These results are consistent with the experimental evidence regarding categorical activations of extrastriate cortices in healthy conditions. Finally, the results produced by the two extreme cases of our model can explain the existence of several factors that may lead to sensory alterations in autistic people.
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Affiliation(s)
- Giovanni Granato
- Laboratory of Computational Embodied Neuroscience, Institute of Cognitive Sciences and Technologies, National Research Council of Italy, Rome, Italy
- School of Computing, Electronics and Mathematics, University of Plymouth, Plymouth, United Kingdom
- * E-mail:
| | - Emilio Cartoni
- Laboratory of Computational Embodied Neuroscience, Institute of Cognitive Sciences and Technologies, National Research Council of Italy, Rome, Italy
| | - Federico Da Rold
- Body Action Language Lab, Institute of Cognitive Sciences and Technologies, National Research Council of Italy, Rome, Italy
| | - Andrea Mattera
- Laboratory of Computational Embodied Neuroscience, Institute of Cognitive Sciences and Technologies, National Research Council of Italy, Rome, Italy
| | - Gianluca Baldassarre
- Laboratory of Computational Embodied Neuroscience, Institute of Cognitive Sciences and Technologies, National Research Council of Italy, Rome, Italy
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Aru J, Siclari F, Phillips WA, Storm JF. Apical drive-A cellular mechanism of dreaming? Neurosci Biobehav Rev 2020; 119:440-455. [PMID: 33002561 DOI: 10.1016/j.neubiorev.2020.09.018] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Revised: 09/08/2020] [Accepted: 09/13/2020] [Indexed: 11/17/2022]
Abstract
Dreams are internally generated experiences that occur independently of current sensory input. Here we argue, based on cortical anatomy and function, that dream experiences are tightly related to the workings of a specific part of cortical pyramidal neurons, the apical integration zone (AIZ). The AIZ receives and processes contextual information from diverse sources and could constitute a major switch point for transitioning from externally to internally generated experiences such as dreams. We propose that during dreams the output of certain pyramidal neurons is mainly driven by input into the AIZ. We call this mode of functioning "apical drive". Our hypothesis is based on the evidence that the cholinergic and adrenergic arousal systems, which show different dynamics between waking, slow wave sleep, and rapid eye movement sleep, have specific effects on the AIZ. We suggest that apical drive may also contribute to waking experiences, such as mental imagery. Future studies, investigating the different modes of apical function and their regulation during sleep and wakefulness are likely to be richly rewarded.
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Affiliation(s)
- Jaan Aru
- Institute of Computer Science, University of Tartu, Estonia; Institute of Biology, Humboldt University Berlin, Germany.
| | - Francesca Siclari
- Center for Investigation and Research on Sleep, Centre Hospitalier Universitaire Vaudois, Lausanne, Switzerland; Department of Clinical Neurosciences, Centre Hospitalier Universitaire Vaudois, Lausanne, Switzerland; Faculty of Natural Sciences, Psychology, University of Stirling, Stirling, United Kingdom.
| | - William A Phillips
- Faculty of Natural Sciences, Psychology, University of Stirling, Stirling, United Kingdom.
| | - Johan F Storm
- Brain Signalling Group, Section for Physiology, Faculty of Medicine, Domus Medica, University of Oslo, PB 1104 Blindern, 0317 Oslo, Norway.
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Guerguiev J, Lillicrap TP, Richards BA. Towards deep learning with segregated dendrites. eLife 2017; 6. [PMID: 29205151 PMCID: PMC5716677 DOI: 10.7554/elife.22901] [Citation(s) in RCA: 148] [Impact Index Per Article: 21.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2016] [Accepted: 10/22/2017] [Indexed: 01/24/2023] Open
Abstract
Deep learning has led to significant advances in artificial intelligence, in part, by adopting strategies motivated by neurophysiology. However, it is unclear whether deep learning could occur in the real brain. Here, we show that a deep learning algorithm that utilizes multi-compartment neurons might help us to understand how the neocortex optimizes cost functions. Like neocortical pyramidal neurons, neurons in our model receive sensory information and higher-order feedback in electrotonically segregated compartments. Thanks to this segregation, neurons in different layers of the network can coordinate synaptic weight updates. As a result, the network learns to categorize images better than a single layer network. Furthermore, we show that our algorithm takes advantage of multilayer architectures to identify useful higher-order representations—the hallmark of deep learning. This work demonstrates that deep learning can be achieved using segregated dendritic compartments, which may help to explain the morphology of neocortical pyramidal neurons. Artificial intelligence has made major progress in recent years thanks to a technique known as deep learning, which works by mimicking the human brain. When computers employ deep learning, they learn by using networks made up of many layers of simulated neurons. Deep learning has opened the door to computers with human – or even super-human – levels of skill in recognizing images, processing speech and controlling vehicles. But many neuroscientists are skeptical about whether the brain itself performs deep learning. The patterns of activity that occur in computer networks during deep learning resemble those seen in human brains. But some features of deep learning seem incompatible with how the brain works. Moreover, neurons in artificial networks are much simpler than our own neurons. For instance, in the region of the brain responsible for thinking and planning, most neurons have complex tree-like shapes. Each cell has ‘roots’ deep inside the brain and ‘branches’ close to the surface. By contrast, simulated neurons have a uniform structure. To find out whether networks made up of more realistic simulated neurons could be used to make deep learning more biologically realistic, Guerguiev et al. designed artificial neurons with two compartments, similar to the ‘roots’ and ‘branches’. The network learned to recognize hand-written digits more easily when it had many layers than when it had only a few. This shows that artificial neurons more like those in the brain can enable deep learning. It even suggests that our own neurons may have evolved their shape to support this process. If confirmed, the link between neuronal shape and deep learning could help us develop better brain-computer interfaces. These allow people to use their brain activity to control devices such as artificial limbs. Despite advances in computing, we are still superior to computers when it comes to learning. Understanding how our own brains show deep learning could thus help us develop better, more human-like artificial intelligence in the future.
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Affiliation(s)
- Jordan Guerguiev
- Department of Biological Sciences, University of Toronto Scarborough, Toronto, Canada.,Department of Cell and Systems Biology, University of Toronto, Toronto, Canada
| | | | - Blake A Richards
- Department of Biological Sciences, University of Toronto Scarborough, Toronto, Canada.,Department of Cell and Systems Biology, University of Toronto, Toronto, Canada.,Learning in Machines and Brains Program, Canadian Institute for Advanced Research, Toronto, Canada
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Phillips WA. Cognitive functions of intracellular mechanisms for contextual amplification. Brain Cogn 2015; 112:39-53. [PMID: 26428863 DOI: 10.1016/j.bandc.2015.09.005] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2015] [Revised: 09/16/2015] [Accepted: 09/18/2015] [Indexed: 01/31/2023]
Abstract
Evidence for the hypothesis that input to the apical tufts of neocortical pyramidal cells plays a central role in cognition by amplifying their responses to feedforward input is reviewed. Apical tufts are electrically remote from the soma, and their inputs come from diverse sources including direct feedback from higher cortical regions, indirect feedback via the thalamus, and long-range lateral connections both within and between cortical regions. This suggests that input to tuft dendrites may amplify the cell's response to basal inputs that they receive via layer 4 and which have synapses closer to the soma. ERP data supporting this inference is noted. Intracellular studies of apical amplification (AA) and of disamplification by inhibitory interneurons targeted only at tufts are reviewed. Cognitive processes that have been related to them by computational, electrophysiological, and psychopathological studies are then outlined. These processes include: figure-ground segregation and Gestalt grouping; contextual disambiguation in perception and sentence comprehension; priming; winner-take-all competition; attention and working memory; setting the level of consciousness; cognitive control; and learning. It is argued that theories in cognitive neuroscience should not assume that all neurons function as integrate-and-fire point processors, but should use the capabilities of cells with distinct sites of integration for driving and modulatory inputs. Potentially 'unifying' theories that depend upon these capabilities are reviewed. It is concluded that evolution of the primitives of AA and disamplification in neocortex may have extended cognitive capabilities beyond those built from the long-established primitives of excitation, inhibition, and disinhibition.
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Affiliation(s)
- William A Phillips
- School of Natural Sciences, University of Stirling, Stirling FK9 4LA, UK.
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Phillips WA, Clark A, Silverstein SM. On the functions, mechanisms, and malfunctions of intracortical contextual modulation. Neurosci Biobehav Rev 2015; 52:1-20. [PMID: 25721105 DOI: 10.1016/j.neubiorev.2015.02.010] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2014] [Revised: 02/02/2015] [Accepted: 02/15/2015] [Indexed: 10/23/2022]
Abstract
A broad neuron-centric conception of contextual modulation is reviewed and re-assessed in the light of recent neurobiological studies of amplification, suppression, and synchronization. Behavioural and computational studies of perceptual and higher cognitive functions that depend on these processes are outlined, and evidence that those functions and their neuronal mechanisms are impaired in schizophrenia is summarized. Finally, we compare and assess the long-term biological functions of contextual modulation at the level of computational theory as formalized by the theories of coherent infomax and free energy reduction. We conclude that those theories, together with the many empirical findings reviewed, show how contextual modulation at the neuronal level enables the cortex to flexibly adapt the use of its knowledge to current circumstances by amplifying and grouping relevant activities and by suppressing irrelevant activities.
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Affiliation(s)
- W A Phillips
- Department of Psychology, University of Stirling, FK9 4LA, Scotland, UK
| | - A Clark
- School of Philosophy, Psychology, and Language Sciences, University of Edinburgh, EH12 5AY, Scotland, UK
| | - S M Silverstein
- Rutgers Biomedical and Health Sciences, Piscataway, NJ, USA.
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A single functional model of drivers and modulators in cortex. J Comput Neurosci 2013; 36:97-118. [DOI: 10.1007/s10827-013-0471-7] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2013] [Revised: 05/10/2013] [Accepted: 06/05/2013] [Indexed: 10/26/2022]
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Casey MC, Sowden PT. Modeling learned categorical perception in human vision. Neural Netw 2012; 33:114-26. [PMID: 22622262 DOI: 10.1016/j.neunet.2012.05.001] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2008] [Revised: 05/01/2012] [Accepted: 05/01/2012] [Indexed: 11/15/2022]
Abstract
A long standing debate in cognitive neuroscience has been the extent to which perceptual processing is influenced by prior knowledge and experience with a task. A converging body of evidence now supports the view that a task does influence perceptual processing, leaving us with the challenge of understanding the locus of, and mechanisms underpinning, these influences. An exemplar of this influence is learned categorical perception (CP), in which there is superior perceptual discrimination of stimuli that are placed in different categories. Psychophysical experiments on humans have attempted to determine whether early cortical stages of visual analysis change as a result of learning a categorization task. However, while some results indicate that changes in visual analysis occur, the extent to which earlier stages of processing are changed is still unclear. To explore this issue, we develop a biologically motivated neural model of hierarchical vision processes consisting of a number of interconnected modules representing key stages of visual analysis, with each module learning to exhibit desired local properties through competition. With this system level model, we evaluate whether a CP effect can be generated with task influence to only the later stages of visual analysis. Our model demonstrates that task learning in just the later stages is sufficient for the model to exhibit the CP effect, demonstrating the existence of a mechanism that requires only a high-level of task influence. However, the effect generalizes more widely than is found with human participants, suggesting that changes to earlier stages of analysis may also be involved in the human CP effect, even if these are not fundamental to the development of CP. The model prompts a hybrid account of task-based influences on perception that involves both modifications to the use of the outputs from early perceptual analysis along with the possibility of changes to the nature of that early analysis itself.
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Self-Organized Complexity and Coherent Infomax from the Viewpoint of Jaynes’s Probability Theory. INFORMATION 2012. [DOI: 10.3390/info3010001] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
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Zheng Y, Meng Y, Jin Y. Object recognition using a bio-inspired neuron model with bottom-up and top-down pathways. Neurocomputing 2011. [DOI: 10.1016/j.neucom.2011.04.020] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Kay JW, Phillips WA. Coherent Infomax as a computational goal for neural systems. Bull Math Biol 2010; 73:344-72. [PMID: 20821064 DOI: 10.1007/s11538-010-9564-x] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2010] [Accepted: 06/17/2010] [Indexed: 11/28/2022]
Abstract
Signal processing in the cerebral cortex is thought to involve a common multi-purpose algorithm embodied in a canonical cortical micro-circuit that is replicated many times over both within and across cortical regions. Operation of this algorithm produces widely distributed but coherent and relevant patterns of activity. The theory of Coherent Infomax provides a formal specification of the objectives of such an algorithm. It also formally derives specifications for both the short-term processing dynamics and for the learning rules whereby the connection strengths between units in the network can be adapted to the environment in which the system finds itself. A central assumption of the theory is that the local processors can combine reliable signal coding with flexible use of those codes because they have two classes of synaptic connection: driving connections which specify the information content of the neural signals, and contextual connections which modulate that signal processing. Here, we make the biological relevance of this theory more explicit by putting more emphasis upon the contextual guidance of ongoing processing, by showing that Coherent Infomax is consistent with a particular Bayesian interpretation for the contextual guidance of learning and processing, by explicitly specifying rules for on-line learning, and by suggesting approximations by which the learning rules can be made computationally feasible within systems composed of very many local processors.
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Affiliation(s)
- Jim W Kay
- Department of Statistics, University of Glasgow, Glasgow, G12 8QQ, UK.
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De Meyer K, Spratling MW. A model of non-linear interactions between cortical top-down and horizontal connections explains the attentional gating of collinear facilitation. Vision Res 2009; 49:553-68. [PMID: 19162060 DOI: 10.1016/j.visres.2008.12.017] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2008] [Revised: 10/21/2008] [Accepted: 12/26/2008] [Indexed: 11/30/2022]
Abstract
Past physiological and psychophysical experiments have shown that attention can modulate the effects of contextual information appearing outside the classical receptive field of a cortical neuron. Specifically, it has been suggested that attention, operating via cortical feedback connections, gates the effects of long-range horizontal connections underlying collinear facilitation in cortical area V1. This article proposes a novel mechanism, based on the computations performed within the dendrites of cortical pyramidal cells, that can account for these observations. Furthermore, it is shown that the top-down gating signal into V1 can result from a process of biased competition occurring in extrastriate cortex. A model based on these two assumptions is used to replicate the results of physiological and psychophysical experiments on collinear facilitation and attentional modulation.
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Affiliation(s)
- Kris De Meyer
- Division of Engineering, King's College London, London WC2R 2LS, United Kingdom.
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Abstract
The human visual system recognizes objects and their constituent parts rapidly and with high accuracy. Standard models of recognition by the visual cortex use feed-forward processing, in which an object's parts are detected before the complete object. However, parts are often ambiguous on their own and require the prior detection and localization of the entire object. We show how a cortical-like hierarchy obtains recognition and localization of objects and parts at multiple levels nearly simultaneously by a single feed-forward sweep from low to high levels of the hierarchy, followed by a feedback sweep from high- to low-level areas.
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