1
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Feder D, Mohd-Pahmi SH, Adibi H, Guddat LW, Schenk G, McGeary RP, Hussein WM. Optimization of an α-aminonaphthylmethylphosphonic acid inhibitor of purple acid phosphatase using rational structure-based design approaches. Eur J Med Chem 2023; 254:115383. [PMID: 37087894 DOI: 10.1016/j.ejmech.2023.115383] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Revised: 04/12/2023] [Accepted: 04/14/2023] [Indexed: 04/25/2023]
Abstract
Purple acid phosphatases (PAPs) are ubiquitous binuclear metallohydrolases that have been isolated from various animals, plants and some types of fungi. In humans and mice, elevated PAP activity in osteoclasts is associated with osteoporosis, making human PAP an attractive target for the development of anti-osteoporotic drugs. Based on previous studies focusing on phosphonate scaffolds, as well as a new crystal structure of a PAP in complex with a derivative of a previously synthesized α-aminonaphthylmethylphosphonic acid, phosphonates 24-40 were designed as new PAP inhibitor candidates. Subsequent docking studies predicted that all of these compounds are likely to interact strongly with the active site of human PAP and most are likely to interact strongly with the active site of pig PAP. The seventeen candidates were synthesized with good yields and nine of them (26-28, 30, 33-36 and 38) inhibit in the sub-micromolar to nanomolar range against pig PAP, with 28 and 35 being the most potent mammalian PAP inhibitors reported with Ki values of 168 nM and 186 nM, respectively. This study thus paves the way for the next stage of drug development for phosphonate inhibitors of PAPs as anti-osteoporotic agents.
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Affiliation(s)
- Daniel Feder
- The University of Queensland, School of Chemistry and Molecular Biosciences, Brisbane, QLD, 4072, Australia
| | - Siti Hajar Mohd-Pahmi
- The University of Queensland, School of Chemistry and Molecular Biosciences, Brisbane, QLD, 4072, Australia
| | - Hadi Adibi
- The University of Queensland, School of Chemistry and Molecular Biosciences, Brisbane, QLD, 4072, Australia; Pharmaceutical Sciences Research Center, Health Institute, Kermanshah University of Medical Sciences, Kermanshah, Iran
| | - Luke W Guddat
- The University of Queensland, School of Chemistry and Molecular Biosciences, Brisbane, QLD, 4072, Australia
| | - Gerhard Schenk
- The University of Queensland, School of Chemistry and Molecular Biosciences, Brisbane, QLD, 4072, Australia; The University of Queensland, Sustainable Minerals Institute, Brisbane, QLD, 4072, Australia; The University of Queensland, Australian Institute of Bioengineering and Nanotechnology, Brisbane, QLD, 4072, Australia
| | - Ross P McGeary
- The University of Queensland, School of Chemistry and Molecular Biosciences, Brisbane, QLD, 4072, Australia
| | - Waleed M Hussein
- The University of Queensland, School of Chemistry and Molecular Biosciences, Brisbane, QLD, 4072, Australia; Helwan University, Pharmaceutical Organic Chemistry Department, Faculty of Pharmacy, Ein Helwan, Helwan, Egypt.
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2
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Aouf Z, Bouacida S, Benzaid C, Amira A, K'tir H, Mathé‐Allainmat M, Lebreton J, Aouf N. Cyclic
N
‐2‐Chloroethyl‐sulfamide Compounds with a Phosphonate Moiety: Synthesis, Characterization, X‐Ray Crystallographic Study and Antimicrobial Evaluation. ChemistrySelect 2021. [DOI: 10.1002/slct.202102650] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- Zineb Aouf
- Chemistry Department Laboratory of Applied Organic Chemistry Bioorganic Chemistry Group Badji Mokhtar-Annaba University, Box 12 23000 Annaba Algeria
| | - Sofiane Bouacida
- Department of Materials Science Larbi Ben Mhidi University Oum El Bouaghi 04000 Algeria
- Chemistry Department Research Unit for Chemistry of the Environment and Molecular Structural University of Constantine 1 Constantine 25000 Algeria
| | - Chahrazed Benzaid
- Biochemistry Department Biofilms and Biocontamination of Materials Research group Badji-Mokhtar-Annaba University, Box 12 23000 Annaba Algeria
| | - Aïcha Amira
- Chemistry Department Laboratory of Applied Organic Chemistry Bioorganic Chemistry Group Badji Mokhtar-Annaba University, Box 12 23000 Annaba Algeria
| | - Hacène K'tir
- Chemistry Department Laboratory of Applied Organic Chemistry Bioorganic Chemistry Group Badji Mokhtar-Annaba University, Box 12 23000 Annaba Algeria
| | - Monique Mathé‐Allainmat
- University of Nantes Faculty of Sciences, CEISAM laboratory, UMR CNRS 6230 2, rue de la Houssinière – BP 92208-44322 NANTES Cedex 3 France
| | - Jacques Lebreton
- University of Nantes Faculty of Sciences, CEISAM laboratory, UMR CNRS 6230 2, rue de la Houssinière – BP 92208-44322 NANTES Cedex 3 France
| | - Nour‐Eddine Aouf
- Chemistry Department Laboratory of Applied Organic Chemistry Bioorganic Chemistry Group Badji Mokhtar-Annaba University, Box 12 23000 Annaba Algeria
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3
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Parente JE, Naso LG, Jori K, Franca CA, da Costa Ferreira AM, Williams PAM, Ferrer EG. In vitroexperiments and infrared spectroscopy analysis of acid and alkaline phosphatase inhibition by vanadium complexes. NEW J CHEM 2019. [DOI: 10.1039/c9nj01638d] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Two oxidovanadium complexes with 4-aminobenzoic acid and/or the peroxo anion as ligands were synthesized and characterized by elemental analysis, conductivity measurements, TGA/DTA,1H NMR, EPR, FTIR, and UV/vis spectroscopies.
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Affiliation(s)
- Juliana E. Parente
- Center of Inorganic Chemistry (CEQUINOR, CONICET-CICPBA-UNLP)
- Department of Chemistry
- Faculty of Exact Sciences
- National University of La Plata
- 1900 La Plata
| | - Luciana G. Naso
- Center of Inorganic Chemistry (CEQUINOR, CONICET-CICPBA-UNLP)
- Department of Chemistry
- Faculty of Exact Sciences
- National University of La Plata
- 1900 La Plata
| | - Khalil Jori
- Center of Inorganic Chemistry (CEQUINOR, CONICET-CICPBA-UNLP)
- Department of Chemistry
- Faculty of Exact Sciences
- National University of La Plata
- 1900 La Plata
| | - Carlos A. Franca
- Center of Inorganic Chemistry (CEQUINOR, CONICET-CICPBA-UNLP)
- Department of Chemistry
- Faculty of Exact Sciences
- National University of La Plata
- 1900 La Plata
| | | | - Patricia A. M. Williams
- Center of Inorganic Chemistry (CEQUINOR, CONICET-CICPBA-UNLP)
- Department of Chemistry
- Faculty of Exact Sciences
- National University of La Plata
- 1900 La Plata
| | - Evelina G. Ferrer
- Center of Inorganic Chemistry (CEQUINOR, CONICET-CICPBA-UNLP)
- Department of Chemistry
- Faculty of Exact Sciences
- National University of La Plata
- 1900 La Plata
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4
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Martini N, Parente JE, D Alessandro F, Rey M, Rizzi A, Williams PAM, Ferrer EG. Potential bio-protective effect of copper compounds: mimicking SOD and peroxidases enzymes and inhibiting acid phosphatase as a target for anti-osteoporotic chemotherapeutics. Mol Biol Rep 2018; 46:867-885. [PMID: 30506507 DOI: 10.1007/s11033-018-4542-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2018] [Accepted: 11/28/2018] [Indexed: 11/28/2022]
Abstract
Copper complexes with transformed methimazole ligand have been synthesized and characterized by elemental analysis, conductivity measurements, thermogravimetric analysis, EPR, FTIR and UV-Vis spectroscopies. Results support their stoichiometries and geometrical structures: [Cu(C4H5N2S)2Cl2]·2H2O(1), [Cu(C8H10N4S)SO4H2O](2) and [Cu(C8H10N4S)SO4](3). ((C4H5N2)2S: bis(l-methylimidazol-2-yl)sulfide; (C4H5N2S)2 = Bis[bis(l-methylimidazol-2-yl)disulfide]) Concurrently, the structurally distinct soluble species corresponding to complexes (1) and (2) were subsequently used in an in vitro investigation of their potential biological properties. In view of their possible pharmaceutical activity, the complexes were in vitro evaluated as phosphatase acid inhibitors. Their radical bio-protective effects were also studied measuring the effect against DPPH• and O2•- radicals. Additional catalytic properties as peroxidase mimics were evaluated using Michaelis-Menten kinetic model by means of phenol red and pyrogallol assays. The complexes exhibited catalytic bromination activity and the ability to oxidize pyrogallol substrate indicating that they can be considered as functional models. The relationships between the structures and the in vitro biological activities have also been considered. Serum protein albumin has attracted the greatest interest as drug carrier and the affinity of biological/pharmaceutical compound is relevant to the development of new medicine. In that sense, interaction studies by fluorescence and EPR spectroscopies were performed showing the binding capacity of the complexes.
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Affiliation(s)
- Nancy Martini
- CEQUINOR, CONICET-CICPBA-UNLP, Faculty of Exact Sciences, National University of La Plata, Bv. 120 No 1465, 1900, La Plata, Argentina
| | - Juliana E Parente
- CEQUINOR, CONICET-CICPBA-UNLP, Faculty of Exact Sciences, National University of La Plata, Bv. 120 No 1465, 1900, La Plata, Argentina
| | - Franco D Alessandro
- CEQUINOR, CONICET-CICPBA-UNLP, Faculty of Exact Sciences, National University of La Plata, Bv. 120 No 1465, 1900, La Plata, Argentina
| | - Marilin Rey
- Physics Department, Faculty of Biochemistry and Biological Sciences, National University of the Litoral, Ciudad Universitaria-Paraje El Pozo, 3000, Santa Fe, Argentina
| | - Alberto Rizzi
- Physics Department, Faculty of Biochemistry and Biological Sciences, National University of the Litoral, Ciudad Universitaria-Paraje El Pozo, 3000, Santa Fe, Argentina
| | - Patricia A M Williams
- CEQUINOR, CONICET-CICPBA-UNLP, Faculty of Exact Sciences, National University of La Plata, Bv. 120 No 1465, 1900, La Plata, Argentina
| | - Evelina G Ferrer
- CEQUINOR, CONICET-CICPBA-UNLP, Faculty of Exact Sciences, National University of La Plata, Bv. 120 No 1465, 1900, La Plata, Argentina.
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5
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Díaz-Quiroz DC, Cardona-Félix CS, Viveros-Ceballos JL, Reyes-González MA, Bolívar F, Ordoñez M, Escalante A. Synthesis, biological activity and molecular modelling studies of shikimic acid derivatives as inhibitors of the shikimate dehydrogenase enzyme of Escherichia coli. J Enzyme Inhib Med Chem 2018; 33:397-404. [PMID: 29363372 PMCID: PMC6009893 DOI: 10.1080/14756366.2017.1422125] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2017] [Revised: 12/22/2017] [Accepted: 12/23/2017] [Indexed: 11/25/2022] Open
Abstract
Shikimic acid (SA) pathway is the common route used by bacteria, plants, fungi, algae, and certain Apicomplexa parasites for the biosynthesis of aromatic amino acids and other secondary metabolites. As this essential pathway is absent in mammals designing inhibitors against implied enzymes may lead to the development of antimicrobial and herbicidal agents harmless to humans. Shikimate dehydrogenase (SDH) is the fourth enzyme of the SA pathway. In this contribution, a series of SA amide derivatives were synthesised and evaluated for in vitro SDH inhibition and antibacterial activity against Escherichia coli. All tested compounds showed to be mixed type inhibitors; diamide derivatives displayed more inhibitory activity than synthesised monoamides. Among the evaluated compounds, molecules called 4a and 4b were the most active derivatives with IC50 588 and 589 µM, respectively. Molecular modelling studies suggested two different binding modes of monoamide and diamide derivatives to the SDH enzyme of E. coli.
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Affiliation(s)
- Dulce Catalina Díaz-Quiroz
- Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, México
| | - César Salvador Cardona-Félix
- Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, México
- CONACyT – Instituto Politécnico Nacional, Centro Interdisciplinario de Ciencias Marinas, La Paz, México
| | | | | | - Franciso Bolívar
- Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, México
| | - Mario Ordoñez
- Centro de Investigaciones Químicas, Universidad Autónoma del Estado de Morelos, Cuernavaca, México
| | - Adelfo Escalante
- Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, México
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6
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Boorsma CE, van der Veen TA, Putri KSS, de Almeida A, Draijer C, Mauad T, Fejer G, Brandsma CA, van den Berge M, Bossé Y, Sin D, Hao K, Reithmeier A, Andersson G, Olinga P, Timens W, Casini A, Melgert BN. A Potent Tartrate Resistant Acid Phosphatase Inhibitor to Study the Function of TRAP in Alveolar Macrophages. Sci Rep 2017; 7:12570. [PMID: 28974738 PMCID: PMC5626781 DOI: 10.1038/s41598-017-12623-w] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2016] [Accepted: 09/13/2017] [Indexed: 12/03/2022] Open
Abstract
The enzyme tartrate resistant acid phosphatase (TRAP, two isoforms 5a and 5b) is highly expressed in alveolar macrophages, but its function there is unclear and potent selective inhibitors of TRAP are required to assess functional aspects of the protein. We found higher TRAP activity/expression in lungs of patients with chronic obstructive pulmonary disease (COPD) and asthma compared to controls and more TRAP activity in lungs of mice with experimental COPD or asthma. Stimuli related to asthma and/or COPD were tested for their capacity to induce TRAP. Receptor activator of NF-κb ligand (RANKL) and Xanthine/Xanthine Oxidase induced TRAP mRNA expression in mouse macrophages, but only RANKL also induced TRAP activity in mouse lung slices. Several Au(III) coordination compounds were tested for their ability to inhibit TRAP activity and [Au(4,4′-dimethoxy-2,2′-bipyridine)Cl2][PF6] (AubipyOMe) was found to be the most potent inhibitor of TRAP5a and 5b activity reported to date (IC50 1.3 and 1.8 μM respectively). AubipyOMe also inhibited TRAP activity in murine macrophage and human lung tissue extracts. In a functional assay with physiological TRAP substrate osteopontin, AubipyOMe inhibited mouse macrophage migration over osteopontin-coated membranes. In conclusion, higher TRAP expression/activity are associated with COPD and asthma and TRAP is involved in regulating macrophage migration.
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Affiliation(s)
- Carian E Boorsma
- University of Groningen, Department of Pharmacokinetics, Toxicology and Targeting, Groningen Research Institute for Pharmacy, Groningen, The Netherlands.,University of Groningen, University Medical Center Groningen, GRIAC Research Institute, Groningen, The Netherlands
| | - T Anienke van der Veen
- University of Groningen, Department of Pharmacokinetics, Toxicology and Targeting, Groningen Research Institute for Pharmacy, Groningen, The Netherlands.,University of Groningen, University Medical Center Groningen, GRIAC Research Institute, Groningen, The Netherlands
| | - Kurnia S S Putri
- University of Groningen, Department of Pharmaceutical Technology and Biopharmacy, Groningen Research Institute for Pharmacy, Groningen, The Netherlands
| | | | - Christina Draijer
- University of Groningen, Department of Pharmacokinetics, Toxicology and Targeting, Groningen Research Institute for Pharmacy, Groningen, The Netherlands.,University of Groningen, University Medical Center Groningen, GRIAC Research Institute, Groningen, The Netherlands
| | - Thais Mauad
- São Paulo University, Department of Pathology, São Paulo, Brazil
| | - Gyorgy Fejer
- University of Plymouth, School of Biomedical and Healthcare Sciences, Peninsula Schools of Medicine and Dentistry, Plymouth, United Kingdom
| | - Corry-Anke Brandsma
- University of Groningen, University Medical Center Groningen, Department of Pathology, Groningen, The Netherlands.,University of Groningen, University Medical Center Groningen, GRIAC Research Institute, Groningen, The Netherlands
| | - Maarten van den Berge
- University of Groningen, University Medical Center Groningen, Department of Pulmonology, Groningen, The Netherlands.,University of Groningen, University Medical Center Groningen, GRIAC Research Institute, Groningen, The Netherlands
| | - Yohan Bossé
- Laval University, Institut Universitaire de Cardiologie et de Pneumologie de Québec, Department of Molecular Medicine, Québec, Canada
| | - Don Sin
- University of British Columbia, James Hogg Research Center, Providence Heart+Lung Institute, St. Paul's Hospital, Vancouver, British Columbia, Canada.,University of British Columbia, Respiratory Division, Department of Medicine, Vancouver, British Columbia, Canada
| | - Ke Hao
- Merck Research Laboratories, Boston, Massachusetts, United States of America
| | - Anja Reithmeier
- Karolinska Institute, Department of Laboratory Medicine (LABMED), H5, Division of Pathology, F46, Karolinska University hospital, Huddinge, Stockholm, Sweden
| | - Göran Andersson
- Karolinska Institute, Department of Laboratory Medicine (LABMED), H5, Division of Pathology, F46, Karolinska University hospital, Huddinge, Stockholm, Sweden
| | - Peter Olinga
- University of Groningen, Department of Pharmaceutical Technology and Biopharmacy, Groningen Research Institute for Pharmacy, Groningen, The Netherlands
| | - Wim Timens
- University of Groningen, University Medical Center Groningen, Department of Pathology, Groningen, The Netherlands.,University of Groningen, University Medical Center Groningen, GRIAC Research Institute, Groningen, The Netherlands
| | - Angela Casini
- University of Groningen, Department of Pharmacokinetics, Toxicology and Targeting, Groningen Research Institute for Pharmacy, Groningen, The Netherlands. .,School of Chemistry, Cardiff University, Cardiff, United Kingdom.
| | - Barbro N Melgert
- University of Groningen, Department of Pharmacokinetics, Toxicology and Targeting, Groningen Research Institute for Pharmacy, Groningen, The Netherlands. .,University of Groningen, University Medical Center Groningen, GRIAC Research Institute, Groningen, The Netherlands.
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