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Elshamy AI, Mohamed TA, Ibrahim MAA, Atia MAM, Yoneyama T, Umeyama A, Hegazy MEF. Two novel oxetane containing lignans and a new megastigmane from Paronychia arabica and in silico analysis of them as prospective SARS-CoV-2 inhibitors. RSC Adv 2021; 11:20151-20163. [PMID: 35479905 PMCID: PMC9033657 DOI: 10.1039/d1ra02486h] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Accepted: 05/15/2021] [Indexed: 12/22/2022] Open
Abstract
The chemical characterization of the extract of the aerial parts of Paronychia arabica afforded two oxetane containing lignans, paronychiarabicine A (1) and B (2), and one new megastigmane, paronychiarabicastigmane A (3), alongside a known lignan (4), eight known phenolic compounds (5–12), one known elemene sesquiterpene (13) and one steroid glycoside (14). The chemical structures of the isolated compounds were constructed based upon the HRMS, 1D, and 2D-NMR results. The absolute configurations were established via NOESY experiments as well as experimental and TDDFT-calculated electronic circular dichroism (ECD). Utilizing molecular docking, the binding scores and modes of compounds 1–3 towards the SARS-CoV-2 main protease (Mpro), papain-like protease (PLpro), and RNA-dependent RNA polymerase (RdRp) were revealed. Compound 3 exhibited a promising docking score (−9.8 kcal mol−1) against SARS-CoV-2 Mpro by forming seven hydrogen bonds inside the active site with the key amino acids. The reactome pathway enrichment analysis revealed a correlation between the inhibition of GSK3 and GSK3B genes (identified as the main targets of megastigmane treatment) and significant inhibition of SARS-CoV-1 viral replication in infected Vero E6 cells. Our results manifest a novel understanding of genes, proteins and corresponding pathways against SARS-CoV-2 infection and could facilitate the identification and characterization of novel therapeutic targets as treatments of SARS-CoV-2 infection. The hydromethanolic extract of Paronychia arabica aerial parts afforded two oxetane containing lignans, paronychiarabicine A (1) and B (2), and one new megastigmane, paronychiarabicastigmane A (3), alongside a known secondary metabolites (4–14).![]()
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Affiliation(s)
- Abdelsamed I Elshamy
- Faculty of Pharmaceutical Sciences, Tokushima Bunri University Yamashiro-cho Tokushima 770-8514 Japan.,Chemistry of Natural Compounds Department, National Research Centre Dokki Giza 12622 Egypt
| | - Tarik A Mohamed
- Chemistry of Medicinal Plants Department, National Research Centre 33 El-Bohouth St., Dokki Giza 12622 Egypt +20-233370931 +20-233371635
| | - Mahmoud A A Ibrahim
- Computational Chemistry Laboratory, Chemistry Department, Faculty of Science, Minia University Minia 61519 Egypt
| | - Mohamed A M Atia
- Molecular Genetics and Genome Mapping Laboratory, Genome Mapping Department, Agricultural Genetic Engineering Research Institute (AGERI), Agricultural Research Center (ARC) Giza 12619 Egypt
| | - Tatsuro Yoneyama
- Faculty of Pharmaceutical Sciences, Tokushima Bunri University Yamashiro-cho Tokushima 770-8514 Japan
| | - Akemi Umeyama
- Faculty of Pharmaceutical Sciences, Tokushima Bunri University Yamashiro-cho Tokushima 770-8514 Japan
| | - Mohamed-Elamir F Hegazy
- Chemistry of Medicinal Plants Department, National Research Centre 33 El-Bohouth St., Dokki Giza 12622 Egypt +20-233370931 +20-233371635.,Department of Pharmaceutical Biology, Institute of Pharmaceutical and Biomedical Sciences, Johannes Gutenberg University Staudinger Weg 5 55128 Mainz Germany
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de Carvalho Martins V, França LP, da Silva Ferreira Y, Pires DC, de Souza Cardoso B, Pessanha de Araújo Santiago MC, Pacheco S, da Costa Souza M, Riger CJ, de Oliveira Godoy RL, Geraldo de Carvalho M. Determination of the Phytochemical Composition and Antioxidant Potential of Eugenia copacabanensis and Myrciaria tenella Leaves (Myrtaceae) Using a Saccharomyces cerevisiae Model. Chem Biodivers 2021; 18:e2100054. [PMID: 33915032 DOI: 10.1002/cbdv.202100054] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Accepted: 04/29/2021] [Indexed: 11/08/2022]
Abstract
Eugenia copacabanensis and Myrciaria tenella are present in restingas of the Atlantic Forest, but little information is available about their chemical and biological potential. In this context, the hexane, dichloromethane, ethyl acetate and butanol fractions from the leaves of methanolic extract were analyzed by GC/MS and HPLC-DAD and the antioxidant potential was determined by DPPH and ABTS assays and using a Saccharomyces cerevisiae model. Dereplication allowed the identification of 68 compounds, 42 and 41 of which, respectively, are first reported here for E. copacabanensis and M. tenella. In vivo results revealed that the ethyl acetate and butanol fractions showed expressive antioxidant protection in the BY4741 and Δgsh1 strains, with greater impact on glutathione-deficient cells. With a high diversity of phenolic compounds, these polar fractions of E. copacabanensis and M. tenella leaves are potential protectors against intracellular oxidative stress.
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Affiliation(s)
- Víctor de Carvalho Martins
- Laboratório de Química de Produtos Naturais, Instituto de Química, Universidade Federal Rural do Rio de Janeiro, Seropédica, RJ, 23897-000, Brasil.,Laboratório de Cromatografia Líquida, Embrapa Agroindústria de Alimentos, Rio de Janeiro, RJ, 23020-470, Brasil
| | - Liliana Princisval França
- Laboratório de Química de Produtos Naturais, Instituto de Química, Universidade Federal Rural do Rio de Janeiro, Seropédica, RJ, 23897-000, Brasil
| | - Yasmim da Silva Ferreira
- Laboratório de Química de Produtos Naturais, Instituto de Química, Universidade Federal Rural do Rio de Janeiro, Seropédica, RJ, 23897-000, Brasil
| | - Daniele Cabral Pires
- Laboratório de Estresse Oxidativo em Microrganismos, Instituto de Química, Universidade Federal Rural do Rio de Janeiro, Seropédica, RJ, 23897-000, Brasil
| | - Bárbara de Souza Cardoso
- Laboratório de Estresse Oxidativo em Microrganismos, Instituto de Química, Universidade Federal Rural do Rio de Janeiro, Seropédica, RJ, 23897-000, Brasil
| | | | - Sidney Pacheco
- Laboratório de Cromatografia Líquida, Embrapa Agroindústria de Alimentos, Rio de Janeiro, RJ, 23020-470, Brasil
| | - Marcelo da Costa Souza
- Herbário RBR, Instituto de Ciências Biológicas e da Saúde, Universidade Federal Rural do Rio de Janeiro, Seropédica, RJ, 23897-000, Brasil
| | - Cristiano Jorge Riger
- Laboratório de Estresse Oxidativo em Microrganismos, Instituto de Química, Universidade Federal Rural do Rio de Janeiro, Seropédica, RJ, 23897-000, Brasil
| | | | - Mario Geraldo de Carvalho
- Laboratório de Química de Produtos Naturais, Instituto de Química, Universidade Federal Rural do Rio de Janeiro, Seropédica, RJ, 23897-000, Brasil
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Teixeira N, Melo JC, Batista LF, Paula-Souza J, Fronza P, Brandão MG. Edible fruits from Brazilian biodiversity: A review on their sensorial characteristics versus bioactivity as tool to select research. Food Res Int 2019; 119:325-348. [DOI: 10.1016/j.foodres.2019.01.058] [Citation(s) in RCA: 43] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2018] [Revised: 01/21/2019] [Accepted: 01/23/2019] [Indexed: 12/24/2022]
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