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Huergo LF, Conzentino M, Gonçalves MV, Gernet MV, Reis RA, Pedrosa FO, Baura VA, Pires A, Gerhardt ECM, Tuleski TR, Balsanelli E, Guizelini D, Souza EM, Chandra G, Cruz LM. The microbiome of a shell mound: ancient anthropogenic waste as a source of Streptomyces degrading recalcitrant polysaccharides. World J Microbiol Biotechnol 2021; 37:210. [PMID: 34719741 DOI: 10.1007/s11274-021-03174-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Accepted: 10/18/2021] [Indexed: 10/20/2022]
Abstract
Metagenome amplicon DNA sequencing and traditional cell culture techniques are helping to uncover the diversity and the biotechnological potential of prokaryotes in different habitats around the world. It has also had a profound impact on microbial taxonomy in the last decades. Here we used metagenome 16S rDNA amplicon sequencing to reveal the microbiome composition of different layers of an anthropogenic soil collected at a shell mound Sambaqui archeological site. The Samabaqui soil microbiome is mainly composed by phyla Acidobacteria, Rokubacteria, Proteobacteria and Thaumarchaeota. Using culture-dependent analysis we obtained few Streptomyces isolates from the Sambaqui soil. One of the isolates, named Streptomyces sp. S3, was able to grow in minimal medium containing recalcitrant polysaccharides including chitin, xylan, carboxymethylcellulose or microcrystalline cellulose as sole carbon sources. The activities of enzymes degrading these compounds were confirmed in cell free supernatants. The genome sequence revealed not only an arsenal of genes related to polysaccharides degradation but also biosynthetic gene clusters which may be involved in the production of biotechnologically interesting secondary metabolites.
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Affiliation(s)
| | | | | | | | | | - Fábio O Pedrosa
- Departamento de Bioquímica e Biologia Molecular, UFPR, Curitiba, PR, Brazil
| | - Valter A Baura
- Departamento de Bioquímica e Biologia Molecular, UFPR, Curitiba, PR, Brazil
| | - Araceli Pires
- Departamento de Bioquímica e Biologia Molecular, UFPR, Curitiba, PR, Brazil
| | | | - Thalita R Tuleski
- Departamento de Bioquímica e Biologia Molecular, UFPR, Curitiba, PR, Brazil
| | - Eduardo Balsanelli
- Departamento de Bioquímica e Biologia Molecular, UFPR, Curitiba, PR, Brazil
| | - Dieval Guizelini
- Programa de Pós-graduação em Bioinformática, UFPR, Curitiba, PR, Brazil
| | - Emanuel M Souza
- Departamento de Bioquímica e Biologia Molecular, UFPR, Curitiba, PR, Brazil
| | - Govind Chandra
- Department of Molecular Microbiology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK
| | - Leonardo M Cruz
- Departamento de Bioquímica e Biologia Molecular, UFPR, Curitiba, PR, Brazil
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Hu M, Yang XQ, Wang CF, Zhao TD, Wang DL, Yang YB, Ding ZT. Paraverrucsins A-F, Antifeedant, and Antiphytopathogenic Polyketides from Rhizospheric Paraphaeosphaeria verruculosa and Induced Bioactivity Enhancement by Coculturing with Host Plant Dendrobium officinale. ACS OMEGA 2020; 5:30596-30602. [PMID: 33283108 PMCID: PMC7711696 DOI: 10.1021/acsomega.0c04548] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Accepted: 11/05/2020] [Indexed: 06/12/2023]
Abstract
Six new polyketides named paraverrucsins A-F (1-6) with oxabicyclic and dioxatricyclic skeletons, together with eight known metabolites (7-14), were discovered and isolated from the fermentation medium of Paraphaeosphaeria verruculosa. Paraverrucsin A-C possessed a novel decarboxylated skeleton compared with that of trichocladinols. Their structures were elucidated by extensive spectral analysis and DP4+ calculations. Paraverrucsins B/C and D/E were isolated as a mixture for the mutarotation occurred at C-2. Paraverrucsins B/C, D/E, F/trichocladinol B, 8, and 9 displayed antifeedant activities against silkworm larvae, with antifeedant index percentages ranging from 62.5 to 93.0%, at a concentration of 50 μg/cm2. Among them, Paraverrucsins B/C and 9 had EC50 values at 13.9 and 18.2 μg/cm2. Most compounds showed antifungal activities against phytopathogenic fungi with minimum inhibitory concentration (MIC) values of 16-64 μg/mL. Coculture of P. verruculosa and host plant Dendrobium officinale leads to the enhancement of antifeedant and antiphytopathogenic activities. Compounds 1, 2/3, 4/5, 6/14 were tested for cytotoxicity against five human carcinoma cell lines, HL-60, A549, MCF-7, SW480, and SMMC-7721, while they exhibited selected cytotoxicity against SW480 with inhibition ratios of 32-38% at a concentration of 40 μM.
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Affiliation(s)
- Ming Hu
- Functional
Molecules Analysis and Biotransformation Key Laboratory of Universities
in Yunnan Province, Yunnan University, 2nd Cuihu North Road, Kunming 650091, China
- Key
Laboratory of Medicinal Chemistry for Natural Resource, Ministry Education
and Yunnan Province, School of Chemical Science and Technology, Yunnan University, 2nd Cuihu North Road, Kunming 650091, China
| | - Xue-Qiong Yang
- Functional
Molecules Analysis and Biotransformation Key Laboratory of Universities
in Yunnan Province, Yunnan University, 2nd Cuihu North Road, Kunming 650091, China
- Key
Laboratory of Medicinal Chemistry for Natural Resource, Ministry Education
and Yunnan Province, School of Chemical Science and Technology, Yunnan University, 2nd Cuihu North Road, Kunming 650091, China
| | - Cui-Fang Wang
- Functional
Molecules Analysis and Biotransformation Key Laboratory of Universities
in Yunnan Province, Yunnan University, 2nd Cuihu North Road, Kunming 650091, China
- Key
Laboratory of Medicinal Chemistry for Natural Resource, Ministry Education
and Yunnan Province, School of Chemical Science and Technology, Yunnan University, 2nd Cuihu North Road, Kunming 650091, China
| | - Tong-De Zhao
- Functional
Molecules Analysis and Biotransformation Key Laboratory of Universities
in Yunnan Province, Yunnan University, 2nd Cuihu North Road, Kunming 650091, China
- Key
Laboratory of Medicinal Chemistry for Natural Resource, Ministry Education
and Yunnan Province, School of Chemical Science and Technology, Yunnan University, 2nd Cuihu North Road, Kunming 650091, China
| | - Dai-Li Wang
- Functional
Molecules Analysis and Biotransformation Key Laboratory of Universities
in Yunnan Province, Yunnan University, 2nd Cuihu North Road, Kunming 650091, China
- Key
Laboratory of Medicinal Chemistry for Natural Resource, Ministry Education
and Yunnan Province, School of Chemical Science and Technology, Yunnan University, 2nd Cuihu North Road, Kunming 650091, China
| | - Ya-Bin Yang
- Functional
Molecules Analysis and Biotransformation Key Laboratory of Universities
in Yunnan Province, Yunnan University, 2nd Cuihu North Road, Kunming 650091, China
- Key
Laboratory of Medicinal Chemistry for Natural Resource, Ministry Education
and Yunnan Province, School of Chemical Science and Technology, Yunnan University, 2nd Cuihu North Road, Kunming 650091, China
| | - Zhong-Tao Ding
- Functional
Molecules Analysis and Biotransformation Key Laboratory of Universities
in Yunnan Province, Yunnan University, 2nd Cuihu North Road, Kunming 650091, China
- Key
Laboratory of Medicinal Chemistry for Natural Resource, Ministry Education
and Yunnan Province, School of Chemical Science and Technology, Yunnan University, 2nd Cuihu North Road, Kunming 650091, China
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Antifeedant and antiphytopathogenic metabolites from co-culture of endophyte Irpex lacteus, phytopathogen Nigrospora oryzae, and entomopathogen Beauveria bassiana. Fitoterapia 2020; 148:104781. [PMID: 33259889 DOI: 10.1016/j.fitote.2020.104781] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Revised: 11/18/2020] [Accepted: 11/21/2020] [Indexed: 12/29/2022]
Abstract
Five new tremulane sesquiterpenoids were isolated from co-culture of endophyte Irpex lacteus, phytopathogen Nigrospora oryzae, and entomopathogen Beauveria bassiana. All compounds showed obvious antifeedant activities against silkworm with inhibition percentages of 73-99%, at concentrations of 50 μg/cm2. Compound 11 indicated notable antifeedant activity with inhibition percentage of 93% at concentration of 6.25 μg/cm2 among them. Compounds 2, 3, 4, 8, 9, 15 and 16 indicated anti-fungal activities against I. lacteus with MIC values ≤8 μg/mL, compounds 11, 12, 16-18 showed significant anti-fungal activity against N. oryzae with MICs ≤ 4 μg/mL, and compounds 2, 5, 12 and 18 indicated significant anti-fungal activity against B. bassiana with MICs ≤ 8 μg/mL. In addition, the I. lacteus should unite B. bassiana to inhibit the production of phytotoxins from N. oryzae in the ternary culture.
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Ding YH, Wang HT, Shi S, Meng Y, Feng JC, Wu HB. Sesquiterpenoids from Artemisia vestita and Their Antifeedant and Antifungal Activities. Molecules 2019; 24:molecules24203671. [PMID: 31614698 PMCID: PMC6832759 DOI: 10.3390/molecules24203671] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2019] [Revised: 10/07/2019] [Accepted: 10/11/2019] [Indexed: 01/08/2023] Open
Abstract
Four new sesquiterpenoids, named artemivestinolide D–G (1–4) and three known sesquiterpenoids (5–7), were isolated from Artemisia vestita. The structures of these new compounds were determined based on extensive spectroscopic data analyses. Furthermore, the electronic circular dichroism data determined the absolute configurations of the new compounds. The antifeedant and antifungal activities of the isolates were evaluated against third-instar larvae of Plutella xylostella and three plant pathogenic fungi. Compounds 1–7 showed moderate antifeedant activities and compounds 1–4 and 6–7 exhibited antifungal activities.
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Affiliation(s)
- Ying-Hui Ding
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China.
| | - Hui-Ting Wang
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China.
| | - Sha Shi
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China.
- Center on Translational Neuroscience, Minzu University of China, Beijing 100081, China.
| | - Yao Meng
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China.
| | - Jin-Chao Feng
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China.
| | - Hai-Bo Wu
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China.
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