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Nelson DR, Mystikou A, Jaiswal A, Rad-Menendez C, Preston MJ, De Boever F, El Assal DC, Daakour S, Lomas MW, Twizere JC, Green DH, Ratcliff WC, Salehi-Ashtiani K. Macroalgal deep genomics illuminate multiple paths to aquatic, photosynthetic multicellularity. MOLECULAR PLANT 2024; 17:747-771. [PMID: 38614077 DOI: 10.1016/j.molp.2024.03.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 01/31/2024] [Accepted: 03/08/2024] [Indexed: 04/15/2024]
Abstract
Macroalgae are multicellular, aquatic autotrophs that play vital roles in global climate maintenance and have diverse applications in biotechnology and eco-engineering, which are directly linked to their multicellularity phenotypes. However, their genomic diversity and the evolutionary mechanisms underlying multicellularity in these organisms remain uncharacterized. In this study, we sequenced 110 macroalgal genomes from diverse climates and phyla, and identified key genomic features that distinguish them from their microalgal relatives. Genes for cell adhesion, extracellular matrix formation, cell polarity, transport, and cell differentiation distinguish macroalgae from microalgae across all three major phyla, constituting conserved and unique gene sets supporting multicellular processes. Adhesome genes show phylum- and climate-specific expansions that may facilitate niche adaptation. Collectively, our study reveals genetic determinants of convergent and divergent evolutionary trajectories that have shaped morphological diversity in macroalgae and provides genome-wide frameworks to understand photosynthetic multicellular evolution in aquatic environments.
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Affiliation(s)
- David R Nelson
- Division of Science and Math, New York University Abu Dhabi, Abu Dhabi, UAE; Center for Genomics and Systems Biology (CGSB), New York University Abu Dhabi, Abu Dhabi, UAE.
| | - Alexandra Mystikou
- Division of Science and Math, New York University Abu Dhabi, Abu Dhabi, UAE; Center for Genomics and Systems Biology (CGSB), New York University Abu Dhabi, Abu Dhabi, UAE; Biotechnology Research Center, Technology Innovation Institute, PO Box 9639, Masdar City, Abu Dhabi, UAE.
| | - Ashish Jaiswal
- Division of Science and Math, New York University Abu Dhabi, Abu Dhabi, UAE
| | - Cecilia Rad-Menendez
- Culture Collection of Algae and Protozoa, Scottish Association for Marine Science, Oban, Scotland, UK
| | - Michael J Preston
- National Center for Marine Algae and Microbiota, Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA
| | - Frederik De Boever
- Culture Collection of Algae and Protozoa, Scottish Association for Marine Science, Oban, Scotland, UK
| | - Diana C El Assal
- Division of Science and Math, New York University Abu Dhabi, Abu Dhabi, UAE
| | - Sarah Daakour
- Division of Science and Math, New York University Abu Dhabi, Abu Dhabi, UAE; Center for Genomics and Systems Biology (CGSB), New York University Abu Dhabi, Abu Dhabi, UAE
| | - Michael W Lomas
- National Center for Marine Algae and Microbiota, Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA
| | - Jean-Claude Twizere
- Division of Science and Math, New York University Abu Dhabi, Abu Dhabi, UAE; Laboratory of Viral Interactomes, GIGA Institute, University of Liege, Liege, Belgium
| | - David H Green
- Culture Collection of Algae and Protozoa, Scottish Association for Marine Science, Oban, Scotland, UK
| | - William C Ratcliff
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA
| | - Kourosh Salehi-Ashtiani
- Division of Science and Math, New York University Abu Dhabi, Abu Dhabi, UAE; Center for Genomics and Systems Biology (CGSB), New York University Abu Dhabi, Abu Dhabi, UAE.
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2
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Panchal SK, Ghattamaneni NKR, Magnusson M, Cole A, Roberts D, Neveux N, Brown L, Paul NA. Freshwater Macroalgae, Oedogonium, Grown in Wastewater Reduce Diet-Induced Metabolic Syndrome in Rats. Int J Mol Sci 2022; 23:ijms232213811. [PMID: 36430290 PMCID: PMC9695597 DOI: 10.3390/ijms232213811] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Revised: 11/06/2022] [Accepted: 11/07/2022] [Indexed: 11/11/2022] Open
Abstract
Macroalgae produce compounds with industrial, pharmaceutical and nutritional applications. In this study, biomass from the freshwater macroalgal genus Oedogonium was grown in either treated municipal wastewater (M) or ash dam water from a coal-fired power station (D). The biomass was investigated for its metabolic responses in high-carbohydrate, high-fat diet-fed rats, a model of human metabolic syndrome. The Oedogonium biomass cultured in M contained higher amounts of K, Mg, omega-3 polyunsaturated fatty acids (PUFA), insoluble fibre and β-carotene, while biomass grown in D contained higher amounts of Al, Fe, V, Zn, Mn and As. Biomass from M further increased body weight and inflammation in the heart and colon in high-carbohydrate, high-fat diet-fed rats. In contrast, biomass from D prevented changes in metabolic, cardiovascular and liver parameters without changing tissue histology. We suggest that increased intake of metals and metalloids through macroalgal biomass from D may decrease abdominal fat deposition while polysaccharides, PUFA and carotenoids from M may improve blood glucose responses in an obesogenic diet. Thus, macroalgal biomass grown in different wastewater sources could be acceptable for feed or food applications. This biomass could even provide potential health benefits in diet-induced metabolic syndrome.
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Affiliation(s)
- Sunil K. Panchal
- Functional Foods Research Group, University of Southern Queensland, Toowoomba, QLD 4350, Australia
- School of Science, Western Sydney University, Richmond, NSW 2753, Australia
- Correspondence: ; Tel.: +61-2-4570-1932
| | - Naga K. R. Ghattamaneni
- Functional Foods Research Group, University of Southern Queensland, Toowoomba, QLD 4350, Australia
| | - Marie Magnusson
- Te Aka Mātuatua—School of Science, University of Waikato, Tauranga 3112, New Zealand
- College of Marine & Environmental Sciences, James Cook University, Townsville, QLD 4811, Australia
| | - Andrew Cole
- College of Marine & Environmental Sciences, James Cook University, Townsville, QLD 4811, Australia
| | - David Roberts
- College of Marine & Environmental Sciences, James Cook University, Townsville, QLD 4811, Australia
| | - Nicolas Neveux
- College of Marine & Environmental Sciences, James Cook University, Townsville, QLD 4811, Australia
- Pacific Biotechnologies Australia Pty Ltd., James Cook University, Townsville, QLD 4811, Australia
| | - Lindsay Brown
- Functional Foods Research Group, University of Southern Queensland, Toowoomba, QLD 4350, Australia
- School of Pharmacy and Medical Science, Griffith University, Gold Coast, QLD 4222, Australia
| | - Nicholas A. Paul
- School of Science, Technology and Engineering, University of the Sunshine Coast, Maroochydore, QLD 4558, Australia
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López-Mayán JJ, Álvarez-Fernández B, Peña-Vázquez E, Barciela-Alonso MC, Moreda-Piñeiro A, Bermejo-Barrera P. Ultrasonication followed by enzymatic hydrolysis as a sample pre-treatment for the determination of Ag nanoparticles in edible seaweed by SP-ICP-MS. Talanta 2022; 247:123556. [DOI: 10.1016/j.talanta.2022.123556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2022] [Revised: 05/13/2022] [Accepted: 05/14/2022] [Indexed: 11/28/2022]
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Effects of Fermented Seaweed Fertilizer Treatment on Paddy Amino Acid Content and Rhizosphere Microbiome Community. FERMENTATION-BASEL 2022. [DOI: 10.3390/fermentation8090420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Seaweed has often been reported on for it potential bioresources for fertilizers to improve crop productivity and reduce the use of chemical fertilizers (CF). However, little is known about the nutritional status of the crop grown with the implementation of seaweed fertilizers (SF). In this study, the amino acid content of rice produced by SF implementation was evaluated. Furthermore, the rhizosphere bacterial community was also investigated. The paddy seedlings were divided into five groups, control (C0), chemical fertilizer (CF), seaweed fertilizer (SF), chemical and seaweed fertilizer combination 25:75 (CFSF1), and chemical and fertilizer combination 50:50 (CFSF2). The CFSF2 group shown significantly better growth characteristics compared to other groups. Based on the concentration of macronutrients (N, P, K) in paddy leaf, CFSF2 also shown the best results. This also correlates with the abundant amino acid composition in CFSF2 in almost all tested amino acids, namely, serine, phenylalanine, isoleucine, valine, glycine, tyrosine, proline, threonine, histidine, and arginine. Interestingly, beneficial bacteria Rhizobiales were significantly higher in CFSF2-treated soil (58%) compared to CF (29%). Another important group, Vicinamibacterales, was also significantly higher in CFSF2 (58%) compared to CF (7%). Hence, these potentially contributed to the high rice amino acid content and yield in the CFSF2-treated paddy. However, further field-scale studies are needed to confirm the bioindustrial application of seaweed in agricultural systems.
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Bio-Based Products from Mediterranean Seaweeds: Italian Opportunities and Challenges for a Sustainable Blue Economy. SUSTAINABILITY 2022. [DOI: 10.3390/su14095634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Seaweeds are attracting increasing attention as an alternative healthy food and renewable drugs source and as agents of climate change mitigation that provide essential ecosystem services. In this context, seaweeds represent marine resources capable of supporting and pursuing the objectives of the Sustainable Blue Economy and the Bio-Based Circular Economy. In this review, we analyze the state of seaweed bio-based products and research on the Mediterranean Sea from the last 20 years. Results of this analysis show a large number of investigations focusing on antimicrobial, antioxidant and anti-inflammatory activities compared to on biofuels and bioplastics. Attempts at seaweed farming, although generally very limited, are present in Israel and some North African countries. Lastly, we focus on the Italian situation—including research, companies and legislation on seaweed production—and we discuss gaps, perspectives and challenges for the potential development of a sustainable seaweed industry according to the Sustainable Blue Economy.
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Todorov TI, Wolle MM, Conklin SD. Distribution of 26 major and trace elements in edible seaweeds from the US market. CHEMOSPHERE 2022; 294:133651. [PMID: 35065179 DOI: 10.1016/j.chemosphere.2022.133651] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Revised: 01/12/2022] [Accepted: 01/14/2022] [Indexed: 06/14/2023]
Abstract
In this study we present an elemental profile of 46 edible seaweed samples purchased in the United States. The seaweeds were grouped in 13 subgroups/species based on DNA barcoding analysis. The seaweeds were decomposed by microwave accelerated acid digestion followed by quantification of 26 elements by ICP-MS. Elements were grouped into macronutrient (Na, K, Ca, S, Mg and P), essential (Fe, Zn, Mn, V, Cu, Cr, Ni, Mo and Se), non-essential including toxic elements (Sr, Ba, Th, Sn and Sb As, Cd, Pb, U, W and Hg). The highest levels were found for Na and the lowest were for Hg. The elemental profiles depended on the taxonomy of the species and several elements (Fe, Ba, Cr, Pb, W and Th) also exhibited high intraspecies variations, likely due to geographic origin or food processing conditions. Higher Cd and Pb accumulation was observed in wakame, hijiki and nori, with Cd as high 4.05 mg/kg and Pb as high as 2.85 mg/kg in kombu. A study of correlation between the elements using Pearson's coefficients revealed multiple pairs of highly correlated elements in seaweed, as well as triple and quintuple correlations of certain elements.
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Affiliation(s)
- Todor I Todorov
- Office of Regulatory Science, Center for Food Safety and Applied Nutrition, US Food and Drug Administration, 5001 Campus Dr, College Park, MD, 20740, USA.
| | - Mesay M Wolle
- Office of Regulatory Science, Center for Food Safety and Applied Nutrition, US Food and Drug Administration, 5001 Campus Dr, College Park, MD, 20740, USA
| | - Sean D Conklin
- Office of Regulatory Science, Center for Food Safety and Applied Nutrition, US Food and Drug Administration, 5001 Campus Dr, College Park, MD, 20740, USA
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Fawzy MA. Biosorption of copper ions from aqueous solution by Codium vermilara: Optimization, kinetic, isotherm and thermodynamic studies. ADV POWDER TECHNOL 2020. [DOI: 10.1016/j.apt.2020.07.014] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Optimisation and Modelling of Pb (II) and Cu (II) Biosorption onto Red Algae (Gracilaria changii) by Using Response Surface Methodology. WATER 2019. [DOI: 10.3390/w11112325] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The removal of Pb (II) and Cu (II) ions by using marine red macroalgae (Gracilaria changii) as a biosorbent material was evaluated through the batch equilibrium technique. The effect of solution pH on the removal of metal ions was investigated within the range of 2–7. The response surface methodology (RSM) technique involving central composite design (CCD) was utilised to optimise the three main sorption parameters, namely initial metal ion concentration, contact time, and biosorbent dosage, to achieve maximum ion removal. The models’ adequacy of response was verified by ANOVA. The optimum conditions for removal of Pb (II) and Cu (II) were as follows: pH values of 4.5 and 5, initial concentrations of 40 mg/L, contact times of 115 and 45 min, and biosorbent dosage of 1 g/L, at which the maximum removal percentages were 96.3% and 44.77%, respectively. The results of the adsorption isotherm study showed that the data fitted well with the Langmuir’s model for Pb (II) and Cu (II). The results of the adsorption kinetic study showed that the data fitted well with the pseudo-second order model for Pb (II) and Cu (II). In conclusion, red alga biomass exhibits great potential as an efficient low-cost sorbent for removal of metal ions.
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