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Xie Q, Wang D, Ding Y, Gao W, Li J, Cao C, Sun L, Liu Z, Gao C. The ethylene response factor gene, ThDRE1A, is involved in abscisic acid- and ethylene-mediated cadmium accumulation in Tamarix hispida. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 937:173422. [PMID: 38796019 DOI: 10.1016/j.scitotenv.2024.173422] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Revised: 05/16/2024] [Accepted: 05/19/2024] [Indexed: 05/28/2024]
Abstract
Tamarix hispida is highly tolerant to salt, drought and heavy metal stress and is a potential material for the remediation of cadmium (Cd)-contaminated soil under harsh conditions. In this study, T. hispida growth and chlorophyll content decreased, whereas flavonoid and carotenoid contents increased under long-term Cd stress (25 d). The aboveground components of T. hispida were collected for RNA-seq to investigate the mechanism of Cd accumulation. GO and KEGG enrichment analyses revealed that the differentially expressed genes (DEGs) were significantly enriched in plant hormone-related pathways. Exogenous hormone treatment and determination of Cd2+ levels showed that ethylene (ETH) and abscisic acid (ABA) antagonists regulate Cd accumulation in T. hispida. Twenty-five transcription factors were identified as upstream regulators of hormone-related pathways. ThDRE1A, which was previously identified as an important regulatory factor, was selected for further analysis. The results indicated that ThABAH2.5 and ThACCO3.1 were direct target genes of ThDRE1A. The determination of Cd2+, ABA, and ETH levels indicated that ThDRE1A plays an important role in Cd accumulation through the antagonistic regulation of ABA and ETH. In conclusion, these results reveal the molecular mechanism underlying Cd accumulation in plants and identify candidate genes for further research.
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Affiliation(s)
- Qingjun Xie
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China; Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, Northeast Forestry University, Harbin 150040, China
| | - Danni Wang
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China
| | - Yuting Ding
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China
| | - Wenshuo Gao
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China
| | - Jinghang Li
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China
| | - Chuanwang Cao
- Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, Northeast Forestry University, Harbin 150040, China
| | - Lili Sun
- Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, Northeast Forestry University, Harbin 150040, China
| | - Zhongyuan Liu
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China
| | - Caiqiu Gao
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China.
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2
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Lai D, Zhang K, He Y, Fan Y, Li W, Shi Y, Gao Y, Huang X, He J, Zhao H, Lu X, Xiao Y, Cheng J, Ruan J, Georgiev MI, Fernie AR, Zhou M. Multi-omics identification of a key glycosyl hydrolase gene FtGH1 involved in rutin hydrolysis in Tartary buckwheat (Fagopyrum tataricum). PLANT BIOTECHNOLOGY JOURNAL 2024; 22:1206-1223. [PMID: 38062934 PMCID: PMC11022807 DOI: 10.1111/pbi.14259] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 10/16/2023] [Accepted: 11/20/2023] [Indexed: 04/18/2024]
Abstract
Rutin, a flavonoid rich in buckwheat, is important for human health and plant resistance to external stresses. The hydrolysis of rutin to quercetin underlies the bitter taste of Tartary buckwheat. In order to identify rutin hydrolysis genes, a 200 genotypes mini-core Tartary buckwheat germplasm resource was re-sequenced with 30-fold coverage depth. By combining the content of the intermediate metabolites of rutin metabolism with genome resequencing data, metabolite genome-wide association analyses (GWAS) eventually identified a glycosyl hydrolase gene FtGH1, which could hydrolyse rutin to quercetin. This function was validated both in Tartary buckwheat overexpression hairy roots and in vitro enzyme activity assays. Mutation of the two key active sites, which were determined by molecular docking and experimentally verified via overexpression in hairy roots and transient expression in tobacco leaves, exhibited abnormal subcellular localization, suggesting functional changes. Sequence analysis revealed that mutation of the FtGH1 promoter in accessions of two haplotypes might be necessary for enzymatic activity. Co-expression analysis and GWAS revealed that FtbHLH165 not only repressed FtGH1 expression, but also increased seed length. This work reveals a potential mechanism behind rutin metabolism, which should provide both theoretical support in the study of flavonoid metabolism and in the molecular breeding of Tartary buckwheat.
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Affiliation(s)
- Dili Lai
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop SciencesChinese Academy of Agricultural SciencesBeijingChina
- College of AgricultureGuizhou UniversityGuiyangChina
| | - Kaixuan Zhang
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop SciencesChinese Academy of Agricultural SciencesBeijingChina
| | - Yuqi He
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop SciencesChinese Academy of Agricultural SciencesBeijingChina
| | - Yu Fan
- School of Food and Biological EngineeringChengdu UniversityChengduChina
| | - Wei Li
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop SciencesChinese Academy of Agricultural SciencesBeijingChina
| | - Yaliang Shi
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop SciencesChinese Academy of Agricultural SciencesBeijingChina
| | - Yuanfen Gao
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop SciencesChinese Academy of Agricultural SciencesBeijingChina
| | - Xu Huang
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop SciencesChinese Academy of Agricultural SciencesBeijingChina
| | - Jiayue He
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop SciencesChinese Academy of Agricultural SciencesBeijingChina
| | - Hui Zhao
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop SciencesChinese Academy of Agricultural SciencesBeijingChina
| | - Xiang Lu
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop SciencesChinese Academy of Agricultural SciencesBeijingChina
| | - Yawen Xiao
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop SciencesChinese Academy of Agricultural SciencesBeijingChina
| | | | - Jingjun Ruan
- College of AgricultureGuizhou UniversityGuiyangChina
| | - Milen I. Georgiev
- Laboratory of Metabolomics, Institute of MicrobiologyBulgarian Academy of SciencesPlovdivBulgaria
- Center of Plant Systems Biology and BiotechnologyPlovdivBulgaria
| | - Alisdair R. Fernie
- Center of Plant Systems Biology and BiotechnologyPlovdivBulgaria
- Department of Molecular PhysiologyMax‐Planck‐Institute of Molecular Plant PhysiologyPotsdam‐GolmGermany
| | - Meiliang Zhou
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop SciencesChinese Academy of Agricultural SciencesBeijingChina
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Altansambar N, Sezgin Muslu A, Kadıoglu A. The combined application of rutin and silicon alleviates osmotic stress in maize seedlings by triggering accumulation of osmolytes and antioxidants' defense mechanisms. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2024; 30:513-525. [PMID: 38633275 PMCID: PMC11018582 DOI: 10.1007/s12298-024-01430-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Revised: 01/28/2024] [Accepted: 03/04/2024] [Indexed: 04/19/2024]
Abstract
Silicon (Si) has been shown to improve plant defenses against a variety of stresses. However, how rutin (Rut) affects stress factors is yet to be fully explored. Moreover, their combined role in osmotic stress response remains unclear. The current study was performed to determine how the use of Rut and Si, both separately and in combination, improved the physiological resilience of maize seedlings to two levels of osmotic stress (induced by polyethylene glycol (PEG) 6000). We aimed to enhance osmotic stress tolerance with the simultaneous use of Rut and Si. First, we selected the best water status and the lowest membrane damage enhancing concentration of Rut (60 ppm) and Si (1 mM) to research their tolerance and resistance to osmotic stress (moderate: 10% PEG, severe: 15% PEG). The application of Rut and Si separately and together reduced oxidative stress by decreasing the reactive oxygen species and improved the relative water content, osmoprotectants (proline, total soluble sugar, and glycine-betaine), ascorbate level, and some antioxidant defense-related enzyme activities and their gene expression in maize seedlings under osmotic stress. However, these effects were more promising under moderate stress. As a result, findings from the study indicate the synergistic effect of combined Rut and Si on osmotic stress tolerance in maize seedlings. Overall, the combination of Rut and Si was more effective than independent Rut and Si in reducing osmotic stress in maize seedlings. Here, it was clear that Rut played an active role in alleviating stress. This combined application can be useful for developing drought tolerance in crops for the agriculture sector.
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Affiliation(s)
- Namuun Altansambar
- Department of Biology, Faculty of Science, Karadeniz Technical University, 61080 Trabzon, Turkey
| | - Asiye Sezgin Muslu
- Department of Biology, Faculty of Science, Karadeniz Technical University, 61080 Trabzon, Turkey
| | - Asim Kadıoglu
- Department of Biology, Faculty of Science, Karadeniz Technical University, 61080 Trabzon, Turkey
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Gan Y, Yu B, Liu R, Shu B, Liang Y, Zhao Y, Qiu Z, Yan S, Cao B. Systematic analysis of the UDP-glucosyltransferase family: discovery of a member involved in rutin biosynthesis in Solanum melongena. FRONTIERS IN PLANT SCIENCE 2023; 14:1310080. [PMID: 38197083 PMCID: PMC10774229 DOI: 10.3389/fpls.2023.1310080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 11/21/2023] [Indexed: 01/11/2024]
Abstract
Eggplant (Solanum melongena) is an economically important crop and rich in various nutrients, among which rutin that has positive effects on human health is found in eggplant. Glycosylation mediated by UDP-glycosyltransferases (UGTs) is a key step in rutin biosynthesis. However, the UGT gene has not been reported in eggplant to date. Herein, 195 putative UGT genes were identified in eggplant by genome-wide analysis, and they were divided into 17 subgroups (Group A-P and Group R) according to the phylogenetic evolutionary tree. The members of Groups A, B, D, E and L were related to flavonol biosynthesis, and rutin was the typical flavonol. The expression profile showed that the transcriptional levels of SmUGT genes in Clusters 7-10 were closely related to those of rutin biosynthetic pathway genes. Notably, SmUGT89B2 was classified into Cluster 7 and Group B; its expression was consistent with rutin accumulation in different tissues and different leaf stages of eggplant. SmUGT89B2 was located in the nucleus and cell membrane. Virus-induced gene silencing (VIGS) and transient overexpression assays showed that SmUGT89B2 can promote rutin accumulation in eggplant. These findings provide new insights into the UGT genes in eggplant, indicating that SmUGT89B2 is likely to encode the final enzyme in rutin biosynthesis.
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Affiliation(s)
| | | | | | | | | | | | | | - Shuangshuang Yan
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs/Guangdong Vegetable Engineering and Technology Research Center/College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Bihao Cao
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs/Guangdong Vegetable Engineering and Technology Research Center/College of Horticulture, South China Agricultural University, Guangzhou, China
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Zhao H, Ding X, Chu X, Zhang H, Wang X, Zhang X, Liu H, Zhang X, Yin Z, Li Y, Ding X. Plant immune inducer ZNC promotes rutin accumulation and enhances resistance to Botrytis cinerea in tomato. STRESS BIOLOGY 2023; 3:36. [PMID: 37676331 PMCID: PMC10444710 DOI: 10.1007/s44154-023-00106-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2022] [Accepted: 07/09/2023] [Indexed: 09/08/2023]
Abstract
Gray mold is a destructive disease caused by Botrytis cinerea, a pervasive plant pathogen, which poses a threat to both tomato growth and postharvest storage. The utilization of induced resistance presents a potential strategy for combating plant pathogenic attacks. ZNC (zhinengcong), an extract derived from the endophytic fungus Paecilomyces variotii, has been discovered to play a vital role in preventing diverse forms of bacterial infections. Nevertheless, the precise mechanism behind its ability to enhance tomato resistance to fungi remains unclear. In this study, we found that the exogenous spraying of ZNC could significantly improve the resistance of tomato plants to B. cinerea. The results of both the metabolomic analysis and high-performance liquid chromatography (HPLC) demonstrated that tomato plants responded to ZNC treatment by accumulating high levels of rutin. Additional transcriptome analysis uncovered that rutin enhances tomato resistance possible by initiating the generation of reactive oxygen species (ROS) and phosphorylation of mitogen-activated protein kinases (MPKs) related genes expression during the initial phase of invasion by B. cinerea. In addition, we also found that rutin might activate plant immunity by eliciting ethylene (ET) and jasmonic acid (JA)-mediated pathways. Therefore, plant immune inducer ZNC and rutin has bright application prospects and high utilization value to control gray mold.
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Affiliation(s)
- Haipeng Zhao
- State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect Pests, College of Plant Protection, Shandong Agricultural University, Taian, 271018, Shandong, P. R. China
| | - Xiangyu Ding
- State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect Pests, College of Plant Protection, Shandong Agricultural University, Taian, 271018, Shandong, P. R. China
| | - Xiaomeng Chu
- State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect Pests, College of Plant Protection, Shandong Agricultural University, Taian, 271018, Shandong, P. R. China
| | - Haimiao Zhang
- State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect Pests, College of Plant Protection, Shandong Agricultural University, Taian, 271018, Shandong, P. R. China
| | - Xinyu Wang
- State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect Pests, College of Plant Protection, Shandong Agricultural University, Taian, 271018, Shandong, P. R. China
| | - Xinwen Zhang
- State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect Pests, College of Plant Protection, Shandong Agricultural University, Taian, 271018, Shandong, P. R. China
| | - Haoqi Liu
- State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect Pests, College of Plant Protection, Shandong Agricultural University, Taian, 271018, Shandong, P. R. China
| | - Xiaoying Zhang
- Shandong Pengbo Biotechnology Co., Ltd., Taian, 271000, China
| | - Ziyi Yin
- State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect Pests, College of Plant Protection, Shandong Agricultural University, Taian, 271018, Shandong, P. R. China.
| | - Yang Li
- State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect Pests, College of Plant Protection, Shandong Agricultural University, Taian, 271018, Shandong, P. R. China.
| | - Xinhua Ding
- State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect Pests, College of Plant Protection, Shandong Agricultural University, Taian, 271018, Shandong, P. R. China.
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Xie Q, Liu B, Dong W, Li J, Wang D, Liu Z, Gao C. Comparative transcriptomic and metabolomic analyses provide insights into the responses to NaCl and Cd stress in Tamarix hispida. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 884:163889. [PMID: 37142042 DOI: 10.1016/j.scitotenv.2023.163889] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2023] [Revised: 04/26/2023] [Accepted: 04/27/2023] [Indexed: 05/06/2023]
Abstract
Salinity and heavy metal pollution seriously affect plant growth. Tamarix hispida (T. hispida) has the potential to remediate soil saline-alkali and heavy metal pollution. In this study, the response mechanisms of T. hispida under NaCl, CdCl2 (Cd) and combined CdCl2 and NaCl (Cd-NaCl) stresses were explored. Overall, the antioxidant system showed changes under the three stresses. The addition of NaCl inhibited the absorption of Cd2+. However, there were obvious differences in the transcripts and metabolites identified among the three stress responses. Interestingly, the number of DEGs was greatest under NaCl stress (929), but the number of differentially expressed metabolites (DEMs) was lowest (48), with 143 and 187 DEMs identified under Cd and Cd-NaCl stress, respectively. It is worth noting that both DEGs and DEMs were enriched in the linoleic acid metabolism pathway under Cd stress. In particular, the content of lipids changed significantly under Cd and Cd-NaCl stress, suggesting that maintaining normal lipid synthesis and metabolism may be an important way to improve the Cd tolerance of T. hispida. Flavonoids may also play an important role in the response to NaCl and Cd stress. These results provide a theoretical basis for cultivating plants with improved salt and cadmium repair abilities.
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Affiliation(s)
- Qingjun Xie
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China
| | - Baichao Liu
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China
| | - Wenfang Dong
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China
| | - Jinghang Li
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China
| | - Danni Wang
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China
| | - Zhongyuan Liu
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China
| | - Caiqiu Gao
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China.
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Tian P, Feng YX, Li YH. Transcriptome reveals the crucial role of exogenous hydrogen sulfide in alleviation of thiocyanate (SCN -) toxicity in rice seedlings. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:26901-26913. [PMID: 36374388 DOI: 10.1007/s11356-022-24060-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Accepted: 11/02/2022] [Indexed: 06/16/2023]
Abstract
Application of exogenous hydrogen sulfide (H2S) is a novel strategy for alleviation of the adverse effects caused by abiotic stresses. However, little is known about H2S-mediated global molecular response of rice seedlings to thiocyanate (SCN-) exposure. Herein, a hydroponic experiment was carried out to investigate the crucial role of exogenous H2S in alleviation of SCN- toxicity generated at different effective concentrations (EC20: 24.0 mg SCN/L, EC50: 96.0 mg SCN/L, and EC75: 300.0 mg SCN/L) in rice seedlings through transcriptome analysis. The results showed that the total numbers of differentially expressed genes (DEGs, upregulated genes/downregulated genes) in rice roots were 755/313, 1114/3303, and 2184/7427, while they were 427/292, 2134/526, and 2378/890 in rice shoots at EC20, EC50, and EC75 of SCN-, respectively. When exogenous H2S was supplied to rice seedlings exposed to SCN-, the total number of DEGs (upregulated genes/downregulated genes) in rice roots was 1158/316, 1943/2959, and 1737/5392, while it was 2067/937, 2689/683, and 3492/1062 in rice shoots at EC20, EC50, and EC75 of SCN-, respectively. Upregulated DEGs in shoots were positively correlated with SCN- concentration in the presence of exogenous H2S, suggesting its crucial role in regulating the phytotoxicity of SCN-. Gene function and pathway enrichment analyses showed that exogenous H2S triggered "secondary metabolite synthesis," "metabolic pathways," and "signal transduction mechanisms" in rice seedlings corresponding to different effective concentrations of SCN- exposure.
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Affiliation(s)
- Peng Tian
- College of Environmental Science & Engineering, Guilin University of Technology, Guilin, 541004, People's Republic of China
| | - Yu-Xi Feng
- College of Environmental Science & Engineering, Guilin University of Technology, Guilin, 541004, People's Republic of China
| | - Yan-Hong Li
- College of Environmental Science & Engineering, Guilin University of Technology, Guilin, 541004, People's Republic of China.
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